UHGV-0125878 (vOTU-067567)

Viral Genome: UHGV-0125878

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0125878
vOTU ID	vOTU-067567
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_312345
Associated BioSample	SAMEA37081918
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.11
Jumbo phage	No

Genome content
Genome length (bp)	34,072
GC content	52.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	598.21
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0125878_1	K22132	321.8	0	tcdA; tRNA threonylcarbamoyladenosine dehydratase	N/A
PHROG	UHGV-0125878_1	phrog_37075	258.2	0	N/A	unknown function
UniRef90	UHGV-0125878_1	UniRef90_A0A316RCB0	464.0	0	tRNA threonylcarbamoyladenosine dehydratase	N/A
eggNOG-mapper	UHGV-0125878_1	1410628.JNKS01000012_gene2741	315.0	0	ThiF family	N/A
PADLOC	UHGV-0125878_1	E1E2_00023	76.1	5.2e-22	E1-E2	CBASS
Pfam	UHGV-0125878_1	PF00899	N/A	N/A	ThiF family	ThiF
COG	UHGV-0125878_1	COG1179	N/A	N/A	tRNA A37 threonylcarbamoyladenosine dehydratase	N/A
UniRef90	UHGV-0125878_3	UniRef90_A0A316R7E8	111.0	4.38e-31	RHH_1 domain-containing protein	N/A
Pfam	UHGV-0125878_3	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0125878_3	PF01402,NF040976,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0125878_6	K14059	219.4	0	int; integrase	N/A
PHROG	UHGV-0125878_6	phrog_1	200.6	0	integrase	integration and excision
UniRef90	UHGV-0125878_6	UniRef90_A0A316RE68	753.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_6	1161902.HMPREF0378_0144	201.0	0	DNA integration	N/A
Pfam	UHGV-0125878_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0125878_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0125878_6	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0125878_7	K02342	182.6	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0125878_7	phrog_192	153.2	1.4013e-45	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125878_7	UniRef90_A0A316R7F3	597.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_7	545694.TREPR_3623	144.0	5.3e-37	EXOIII	N/A
PADLOC	UHGV-0125878_7	cd06127	127.7	1.3e-37	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0125878_7	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0125878_7	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0125878_7	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
PHROG	UHGV-0125878_8	phrog_16443	46.1	0.00000000000085	N/A	unknown function
eggNOG-mapper	UHGV-0125878_8	1118057.CAGX01000058_gene115	52.0	0.00000031	N/A	N/A
PHROG	UHGV-0125878_9	phrog_87	89.4	2.9e-26	metallo-protease	other
UniRef90	UHGV-0125878_9	UniRef90_A0A316RCR6	261.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_9	1507.HMPREF0262_00423	115.0	2.77e-31	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0125878_9	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0125878_9	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0125878_9	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_10	phrog_8	62.4	1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125878_10	UniRef90_A0A316R9J7	233.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_10	397291.C804_05804	65.5	0.00000000000463	TRANSCRIPTIONal	N/A
Pfam	UHGV-0125878_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0125878_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0125878_10	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125878_11	UniRef90_A0A316R8G0	127.0	2.41e-37	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0125878_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0125878_11	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_12	phrog_668	49.1	0.000000000000026	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
PHROG	UHGV-0125878_13	phrog_33952	197.5	0	N/A	unknown function
PHROG	UHGV-0125878_15	phrog_3584	157.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0125878_15	641107.CDLVIII_1314	124.0	7.76e-32	N/A	N/A
structural_annotation	UHGV-0125878_15	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_16	phrog_34937	218.7	0	N/A	unknown function
PHROG	UHGV-0125878_17	phrog_190	112.8	2.5e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125878_17	UniRef90_R6ISF1	263.0	0	N/A	N/A
eggNOG-mapper	UHGV-0125878_17	563031.HMPREF0666_01122	92.0	4.25e-22	N/A	N/A
Pfam	UHGV-0125878_17	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0125878_17	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_19	phrog_1533	80.8	9.2e-24	tail length tape measure protein	tail
UniRef90	UHGV-0125878_19	UniRef90_UPI001D105E64	68.6	0.000000000000942	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0125878_19	35241.Q9AYV8_BPTU2	79.3	0.00000000000000151	peptidoglycan catabolic process	N/A
NCBIFam	UHGV-0125878_19	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-0125878_20	phrog_35860	50.9	0.000000000000025	N/A	unknown function
UniRef90	UHGV-0125878_20	UniRef90_UPI001B3C69A2	73.6	0.0000000000000122	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0125878_20	457412.RSAG_01173	59.7	0.00000000362	PcfK-like protein	N/A
Pfam	UHGV-0125878_20	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0125878_20	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_21	phrog_8470	474.4	0	N/A	unknown function
UniRef90	UHGV-0125878_21	UniRef90_UPI001C0AE9DA	176.0	4.2039e-45	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_21	1117108.PAALTS15_13637	147.0	1.84e-35	PcfJ-like protein	N/A
Pfam	UHGV-0125878_21	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0125878_21	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_22	phrog_15609	347.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0125878_22	1514668.JOOA01000001_gene225	87.4	1.08e-16	N/A	N/A
structural_annotation	UHGV-0125878_22	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_26	phrog_1558	53.1	9.3e-20	N/A	unknown function
UniRef90	UHGV-0125878_26	UniRef90_A0A316RAK3	207.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_26	411459.RUMOBE_01740	55.8	0.0000000522	N/A	N/A
Pfam	UHGV-0125878_26	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0125878_26	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_27	phrog_144	93.2	2.6e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125878_27	UniRef90_A0A858BSQ3	108.0	2.04e-27	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0125878_27	411459.RUMOBE_01739	109.0	7.3e-29	N/A	N/A
PHROG	UHGV-0125878_28	phrog_83	62.6	8e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0125878_28	UniRef90_A0A316RD76	325.0	0	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0125878_28	742741.HMPREF9475_00421	125.0	4.14e-34	Phage terminase, small subunit	N/A
Pfam	UHGV-0125878_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0125878_28	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0125878_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_29	phrog_9	361.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0125878_29	UniRef90_A0A316R7M0	1151.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0125878_29	411459.RUMOBE_01737	711.0	0	N/A	N/A
Pfam	UHGV-0125878_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0125878_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0125878_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0125878_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_30	phrog_12	300.7	0	portal protein	head and packaging
UniRef90	UHGV-0125878_30	UniRef90_A0A316R7D3	848.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0125878_30	411459.RUMOBE_01735	444.0	0	N/A	N/A
Pfam	UHGV-0125878_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0125878_30	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0125878_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0125878_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0125878_31	K01358	103.2	4e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0125878_31	phrog_94	171.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0125878_31	UniRef90_A0A316R8I3	487.0	0	Clp protease	N/A
eggNOG-mapper	UHGV-0125878_31	742741.HMPREF9475_00424	201.0	0	Clp protease	N/A
Pfam	UHGV-0125878_31	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0125878_31	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0125878_31	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_32	phrog_10	195.8	0	major head protein	head and packaging
UniRef90	UHGV-0125878_32	UniRef90_A0A316RM35	701.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0125878_32	411459.RUMOBE_01733	307.0	0	phage phi-C31 gp36 major capsid-like protein	N/A
Pfam	UHGV-0125878_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0125878_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0125878_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0125878_32	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_33	phrog_40	42.5	0.0000000000085	head-tail adaptor Ad1	connector
UniRef90	UHGV-0125878_33	UniRef90_A0A316R9F5	177.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0125878_33	411468.CLOSCI_01492	76.6	5.17e-17	N/A	N/A
Pfam	UHGV-0125878_33	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0125878_33	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0125878_33	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125878_34	UniRef90_A0A316R8D9	223.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0125878_34	195103.CPF_1582	71.2	0.0000000000000144	Phage head-tail adaptor	N/A
Pfam	UHGV-0125878_34	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0125878_34	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0125878_34	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125878_35	UniRef90_A0A174MCG9	90.1	2.71e-20	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0125878_35	411459.RUMOBE_01730	90.1	4.55e-21	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0125878_35	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0125878_35	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_36	phrog_78	51.4	0.000000000000022	tail terminator	connector
eggNOG-mapper	UHGV-0125878_36	411468.CLOSCI_01495	95.1	1.44e-23	N/A	N/A
structural_annotation	UHGV-0125878_36	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_37	phrog_88	132.8	1.9e-39	major tail protein	tail
UniRef90	UHGV-0125878_37	UniRef90_A0A316RAJ2	394.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0125878_37	411459.RUMOBE_01728	229.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0125878_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0125878_37	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125878_37	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_38	phrog_13494	59.0	7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0125878_38	742741.HMPREF9475_00431	53.9	0.0000000899	N/A	N/A
PHROG	UHGV-0125878_39	phrog_25901	70.7	3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0125878_39	411468.CLOSCI_01498	61.2	0.00000000101	N/A	N/A
PHROG	UHGV-0125878_40	phrog_1533	521.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0125878_40	UniRef90_A0A316R7C3	1071.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0125878_40	35241.Q9AYV8_BPTU2	383.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0125878_40	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0125878_40	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-0125878_41	phrog_33	73.3	5.3e-21	distal tail protein Dit	tail
UniRef90	UHGV-0125878_41	UniRef90_UPI0019689066	103.0	2.11e-23	phage tail protein	N/A
eggNOG-mapper	UHGV-0125878_41	1232452.BAIB02000007_gene1615	139.0	7.81e-38	phage tail	N/A
Pfam	UHGV-0125878_41	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0125878_41	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0125878_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0125878_41	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0125878_42	phrog_1067	121.7	0	minor head protein	head and packaging
UniRef90	UHGV-0125878_42	UniRef90_A0A316RM27	935.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_42	1280689.AUJC01000011_gene1532	114.0	4.43e-24	Prophage endopeptidase tail	N/A
Pfam	UHGV-0125878_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0125878_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0125878_42	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0125878_43	UniRef90_A0A316R9D9	1097.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0125878_43	641107.CDLVIII_4353	59.7	0.0000002	N/A	N/A
structural_annotation	UHGV-0125878_43	PF00386,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125878_44	UniRef90_R6J123	112.0	1.77e-31	ATP synthase B chain	N/A
PHROG	UHGV-0125878_45	phrog_4105	78.1	9.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0125878_45	397288.C806_00056	90.1	8.39e-22	N/A	N/A
PHROG	UHGV-0125878_46	phrog_263	92.4	2.8e-27	holin	lysis
UniRef90	UHGV-0125878_46	UniRef90_R6JQI4	154.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0125878_46	1121344.JHZO01000003_gene952	78.2	8.37e-18	SPP1 phage holin	N/A
Pfam	UHGV-0125878_46	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0125878_46	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0125878_46	PF04688	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125878_47	UniRef90_R6J3S0	571.0	0	Peptidase_C39_2 domain-containing protein	N/A
Pfam	UHGV-0125878_47	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
structural_annotation	UHGV-0125878_47	PF11814,NF033920,COG4990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125878_49	UniRef90_A0A315YPS7	71.2	0.00000000000093	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0125878_49	1280668.ATVT01000007_gene1190	50.1	0.00000295	sequence-specific DNA binding	N/A
COG	UHGV-0125878_49	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0125878_50	PF19923,NF009981,COG0355	N/A	N/A	N/A	N/A