UHGV-0126540 (vOTU-024364)

Viral Genome: UHGV-0126540

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0126540
vOTU ID	vOTU-024364
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_334182
Associated BioSample	SAMN00715211
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.14 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9756
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.24
Jumbo phage	No

Genome content
Genome length (bp)	32,339
GC content	48.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	96%
Average CDS length (bps)	663.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0126540_1	568816.Acin_1216	135.0	4.53001e-40	N/A	N/A
UniRef90	UHGV-0126540_4	UniRef90_UPI0008FBF8A5	62.8	0.00000000196	phage tail protein	N/A
eggNOG-mapper	UHGV-0126540_4	556269.ACDQ01000006_gene1706	66.6	0.000000000113	Phage Tail Collar Domain	N/A
COG	UHGV-0126540_4	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0126540_4	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_5	phrog_33356	145.3	4.2039e-43	N/A	unknown function
eggNOG-mapper	UHGV-0126540_5	1232428.CAVO010000021_gene791	176.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0126540_5	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0126540_7	phrog_1101	369.9	0	tail protein	tail
UniRef90	UHGV-0126540_7	UniRef90_UPI00034E31D3	1788.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0126540_7	1232428.CAVO010000021_gene792	1342.0	0	Putative phage tail protein	N/A
Pfam	UHGV-0126540_7	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
COG	UHGV-0126540_7	COG1344	N/A	N/A	Flagellin and related hook-associated protein FlgL	N/A
structural_annotation	UHGV-0126540_7	PF13550,PF16323,NF040662,NF010681,COG4733	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_8	K13695	46.3	0.00000000000063	nlpC; probable lipoprotein NlpC	N/A
PHROG	UHGV-0126540_8	phrog_329	48.9	0.000000000000063	minor tail protein	tail
UniRef90	UHGV-0126540_8	UniRef90_UPI00034E8322	321.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0126540_8	592028.GCWU000321_01389	207.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0126540_8	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0126540_8	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0126540_8	PF00877,TIGR02219,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_9	phrog_778	59.3	6.4e-17	tail assembly protein	tail
UniRef90	UHGV-0126540_9	UniRef90_UPI00034EB749	380.0	0	N/A	N/A
eggNOG-mapper	UHGV-0126540_9	592028.GCWU000321_01388	226.0	0	N/A	N/A
Pfam	UHGV-0126540_9	PF09931	N/A	N/A	N/A	DUF2163
COG	UHGV-0126540_9	COG5449	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126540_9	PF09931,TIGR01600,COG4672	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_10	phrog_2913	78.2	8.3e-23	glycoside hydrolase	other
UniRef90	UHGV-0126540_10	UniRef90_UPI00034E8F13	390.0	0	N/A	N/A
eggNOG-mapper	UHGV-0126540_10	592028.GCWU000321_01387	183.0	0	N/A	N/A
Pfam	UHGV-0126540_10	PF09343	N/A	N/A	N/A	DUF2460
COG	UHGV-0126540_10	COG5448	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126540_10	PF09343,TIGR02217,COG5448	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_11	phrog_3547	61.7	6.3e-18	tail length tape measure protein	tail
UniRef90	UHGV-0126540_11	UniRef90_H1CYW8	171.0	4.34e-40	Tape measure domain-containing protein	N/A
eggNOG-mapper	UHGV-0126540_11	742743.HMPREF9453_00556	171.0	7.28003e-41	tape measure	N/A
COG	UHGV-0126540_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0126540_13	phrog_1407	52.8	0.0000000000000064	major tail protein	tail
UniRef90	UHGV-0126540_13	UniRef90_UPI00034E16F7	330.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0126540_13	1000569.HMPREF1040_0191	64.7	0.0000000000948	Phage tail tube protein	N/A
Pfam	UHGV-0126540_13	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
COG	UHGV-0126540_13	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0126540_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126540_14	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_15	phrog_25	47.0	0.00000000000046	head closure Hc1	connector
UniRef90	UHGV-0126540_15	UniRef90_UPI00034E17BA	218.0	0	head-tail adaptor protein	N/A
Pfam	UHGV-0126540_15	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0126540_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_16	phrog_10	147.7	1.09301e-43	major head protein	head and packaging
UniRef90	UHGV-0126540_16	UniRef90_UPI00034E6317	526.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0126540_16	742743.HMPREF9453_00561	350.0	0	Phage capsid family	N/A
Pfam	UHGV-0126540_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0126540_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0126540_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0126540_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126540_18	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_19	phrog_12	174.1	0	portal protein	head and packaging
UniRef90	UHGV-0126540_19	UniRef90_UPI0003A6F402	710.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0126540_19	742743.HMPREF9453_00564	412.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0126540_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0126540_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0126540_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0126540_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_20	K01358	75.2	1.1e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0126540_20	phrog_94	117.6	1.6e-34	head maturation protease	head and packaging
UniRef90	UHGV-0126540_20	UniRef90_UPI00034EC39A	283.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0126540_20	742743.HMPREF9453_00565	135.0	3.6e-36	serine-type endopeptidase activity	N/A
Pfam	UHGV-0126540_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0126540_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0126540_20	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126540_21	UniRef90_UPI00094F3068	105.0	9.31e-28	head-tail connector protein	N/A
structural_annotation	UHGV-0126540_21	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_22	phrog_9	185.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0126540_22	UniRef90_UPI00034E32F3	1130.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0126540_22	742743.HMPREF9453_00567	817.0	0	large subunit	N/A
Pfam	UHGV-0126540_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0126540_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0126540_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0126540_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_23	phrog_144	48.3	0.00000000000021	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126540_23	UniRef90_UPI0008D9916E	148.0	2.32616e-43	N/A	N/A
eggNOG-mapper	UHGV-0126540_23	903814.ELI_3119	55.1	0.000000132	HNH endonuclease	N/A
COG	UHGV-0126540_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0126540_25	phrog_36	78.6	9.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0126540_25	UniRef90_UPI00034E2E54	125.0	8.26e-35	N/A	N/A
eggNOG-mapper	UHGV-0126540_25	994573.T472_0214010	72.0	0.0000000000000402	sigma factor activity	N/A
Pfam	UHGV-0126540_25	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0126540_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0126540_25	PF07374,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126540_28	UniRef90_UPI001D0184F4	206.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0126540_28	1123288.SOV_4c02500	89.0	1.04e-21	Archaeal holliday junction resolvase (hjc)	N/A
Pfam	UHGV-0126540_28	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
structural_annotation	UHGV-0126540_28	PF18743,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_29	K03111	131.8	8.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0126540_29	phrog_44	126.5	2.3e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126540_29	UniRef90_A0A415EMY9	170.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0126540_29	591001.Acfer_0039	162.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0126540_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0126540_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0126540_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0126540_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0126540_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_31	K02315	119.0	5e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0126540_31	phrog_50	119.7	3.1e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126540_31	UniRef90_UPI001D07AA17	376.0	0	DnaA/Hda family protein	N/A
eggNOG-mapper	UHGV-0126540_31	1111454.HMPREF1250_0279	315.0	0	DNA replication protein	N/A
COG	UHGV-0126540_31	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0126540_31	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_32	phrog_2514	85.4	6.2e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126540_32	UniRef90_UPI001B2B22D5	122.0	5.17e-30	DNA replication protein DnaD	N/A
eggNOG-mapper	UHGV-0126540_32	1196322.A370_04074	119.0	1.61e-29	DnaD domain protein	N/A
COG	UHGV-0126540_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0126540_32	PF09681,MF_01177,TIGR01714,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_33	K06167	52.5	0.0000000000000071	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0126540_33	phrog_392	177.8	0	metal-dependent hydrolase	other
UniRef90	UHGV-0126540_33	UniRef90_UPI001D06240E	271.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0126540_33	1027292.HMPREF9372_3394	168.0	0	Beta-lactamase superfamily domain	N/A
Pfam	UHGV-0126540_33	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0126540_33	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0126540_33	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_34	K07455	94.6	1.8e-27	recT; recombination protein RecT	N/A
PHROG	UHGV-0126540_34	phrog_148	82.6	4.8e-24	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126540_34	UniRef90_UPI001D097B3F	412.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0126540_34	1121085.AUCI01000010_gene513	105.0	3.17e-23	RecT family	N/A
Pfam	UHGV-0126540_34	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0126540_34	PF03837,NF007351	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_35	K19171	83.1	1.7e-25	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0126540_35	phrog_77	237.1	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126540_35	UniRef90_UPI001D060172	814.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0126540_35	1382358.JHVN01000024_gene1691	365.0	0	N/A	N/A
Pfam	UHGV-0126540_35	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0126540_35	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0126540_35	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_39	phrog_1689	68.4	1.5e-19	nucleotide kinase	other
UniRef90	UHGV-0126540_39	UniRef90_UPI000F54479C	69.3	0.00000000000319	N/A	N/A
eggNOG-mapper	UHGV-0126540_39	1003200.AXXA_28145	55.8	0.0000000244	N/A	N/A
Pfam	UHGV-0126540_39	PF11753	N/A	N/A	N/A	DUF3310
UniRef90	UHGV-0126540_41	UniRef90_UPI001D016E13	172.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0126540_41	568816.Acin_1401	166.0	0	LysM domain	N/A
Pfam	UHGV-0126540_41	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0126540_41	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0126540_41	PF01476,MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_42	phrog_7735	46.5	0.00000000000065	excisionase	integration and excision
UniRef90	UHGV-0126540_42	UniRef90_G4Q2G8	208.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0126540_42	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0126540_42	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126540_43	UniRef90_A0A098AVW3	74.7	4.5e-16	Lambda repressor-like, DNA-binding domain	N/A
eggNOG-mapper	UHGV-0126540_43	1298920.KI911353_gene527	59.7	0.0000000000895	N/A	N/A
structural_annotation	UHGV-0126540_43	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_44	K22300	61.6	1.7e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0126540_44	phrog_8	59.4	9.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0126540_44	UniRef90_UPI00034E499C	218.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0126540_44	706434.HMPREF9429_00594	118.0	1.31e-32	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0126540_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0126540_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0126540_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_45	phrog_20936	55.6	9.9e-16	N/A	unknown function
UniRef90	UHGV-0126540_45	UniRef90_UPI000F8E443B	50.8	0.0000021	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0126540_45	861450.HMPREF0080_02020	62.0	0.0000000000146	N/A	N/A
structural_annotation	UHGV-0126540_45	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0126540_46	phrog_26910	78.8	6.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0126540_46	877418.ATWV01000026_gene2008	62.4	0.0000000103	N/A	N/A
structural_annotation	UHGV-0126540_46	PF13028,COG4875	N/A	N/A	N/A	N/A
KOfam	UHGV-0126540_47	K14059	189.0	0	int; integrase	N/A
PHROG	UHGV-0126540_47	phrog_1	175.3	0	integrase	integration and excision
UniRef90	UHGV-0126540_47	UniRef90_UPI001D00309B	654.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0126540_47	568816.Acin_1406	485.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0126540_47	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0126540_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0126540_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0126540_47	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A