UHGV-0126956 (vOTU-082196)

Viral Genome: UHGV-0126956

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0126956
vOTU ID	vOTU-082196
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_338048
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9832
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.27
Jumbo phage	No

Genome content
Genome length (bp)	42,839
GC content	57.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	92%
Average CDS length (bps)	628.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0126956_1	phrog_38707	44.2	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0126956_1	1235793.C809_03302	66.6	0.0000000146	N/A	N/A
PHROG	UHGV-0126956_2	phrog_15239	87.3	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0126956_2	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
PHROG	UHGV-0126956_3	phrog_1357	259.5	0	major head protein	head and packaging
UniRef90	UHGV-0126956_3	UniRef90_A0A8D9UH64	800.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0126956_3	1449126.JQKL01000003_gene1695	454.0	0	N/A	N/A
Pfam	UHGV-0126956_3	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0126956_3	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0126956_3	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_4	phrog_13908	309.4	0	N/A	unknown function
UniRef90	UHGV-0126956_4	UniRef90_A0A844DRV7	119.0	9.87e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0126956_4	1410650.JHWL01000003_gene2831	122.0	1.42e-29	N/A	N/A
UniRef90	UHGV-0126956_5	UniRef90_A0A8D9PDR6	192.0	0	YsxB-like protein	N/A
Pfam	UHGV-0126956_5	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0126956_5	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_6	phrog_156	328.4	0	portal protein	head and packaging
UniRef90	UHGV-0126956_6	UniRef90_A0A8D9UH10	1243.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0126956_6	748224.HMPREF9436_01396	537.0	0	N/A	N/A
structural_annotation	UHGV-0126956_6	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0126956_7	K06909	116.6	2.8e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0126956_7	phrog_979	195.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0126956_7	UniRef90_A0A8D9PDR5	1016.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0126956_7	1321782.HMPREF1986_00343	615.0	0	N/A	N/A
Pfam	UHGV-0126956_7	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0126956_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0126956_7	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126956_8	UniRef90_A0A8D9PDT2	208.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0126956_8	1226322.HMPREF1545_00042	141.0	2.07e-41	N/A	N/A
structural_annotation	UHGV-0126956_8	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0126956_9	K22299	47.4	0.00000000000048	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0126956_9	phrog_8	64.7	2.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0126956_9	UniRef90_A0A8D9PDC4	152.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0126956_9	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0126956_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0126956_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0126956_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_14	phrog_2470	55.8	7e-16	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0126956_14	UniRef90_A0A414ZRJ4	128.0	1.14e-36	N/A	N/A
eggNOG-mapper	UHGV-0126956_14	649747.HMPREF0083_06229	50.1	0.00000243	N/A	N/A
Pfam	UHGV-0126956_14	PF11750	N/A	N/A	N/A	DUF3307
structural_annotation	UHGV-0126956_14	PF11750	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_15	phrog_599	49.4	0.000000000000099	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0126956_15	UniRef90_A0A3R6D179	107.0	2.61e-28	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0126956_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0126956_15	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0126956_15	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0126956_15	TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-0126956_19	K00558	109.2	7.1e-36	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0126956_19	phrog_116	136.4	0	DNA methyltransferase	other
UniRef90	UHGV-0126956_19	UniRef90_A0A1C5KYC3	313.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0126956_19	718252.FP2_16350	303.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0126956_19	oMTase_00004	149.9	0	orphan methyltransferase	RM
Pfam	UHGV-0126956_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0126956_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0126956_21	K00571	93.1	1.4e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0126956_21	phrog_67	72.0	2.7e-29	DNA methyltransferase	other
UniRef90	UHGV-0126956_21	UniRef90_A0A7X8MLD3	199.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0126956_21	1125725.HMPREF1325_1312	177.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-0126956_21	MTase_II_00172	99.4	5.5e-29	Type II methyltransferase	RM
Pfam	UHGV-0126956_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0126956_21	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0126956_21	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_22	phrog_190	101.5	8.2e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126956_22	UniRef90_A0A8D9PDD6	254.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0126956_22	862517.HMPREF9225_1657	73.6	0.00000000000000688	N/A	N/A
Pfam	UHGV-0126956_22	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0126956_22	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_24	phrog_9804	68.0	1.5e-19	N/A	unknown function
UniRef90	UHGV-0126956_24	UniRef90_A0A8D9PDS1	262.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-0126956_24	903814.ELI_3550	84.3	1.65e-18	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0126956_24	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0126956_24	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_25	phrog_15768	79.6	3.5e-24	N/A	unknown function
UniRef90	UHGV-0126956_25	UniRef90_A0A8D9PDU3	108.0	4.88e-26	N/A	N/A
eggNOG-mapper	UHGV-0126956_25	445970.ALIPUT_02689	81.3	7.3e-16	DNA-binding transcription factor activity	N/A
Pfam	UHGV-0126956_25	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0126956_25	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0126956_25	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0126956_27	K03111	146.5	2.8026e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0126956_27	phrog_44	140.4	1.10002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126956_27	UniRef90_UPI001958E09C	194.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0126956_27	1007096.BAGW01000007_gene1922	191.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0126956_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0126956_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0126956_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0126956_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0126956_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_28	phrog_7566	96.2	1.9e-28	N/A	unknown function
UniRef90	UHGV-0126956_28	UniRef90_A0A8D9UHC0	192.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0126956_28	693746.OBV_24070	122.0	3.84e-35	N/A	N/A
PHROG	UHGV-0126956_30	phrog_1389	80.1	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0126956_30	1347392.CCEZ01000060_gene3269	113.0	3.1e-31	N/A	N/A
structural_annotation	UHGV-0126956_30	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_31	phrog_7838	144.0	1.00053e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126956_31	UniRef90_A0A8D9UGW3	430.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0126956_31	742767.HMPREF9456_02052	191.0	0	N/A	N/A
structural_annotation	UHGV-0126956_31	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_32	phrog_253	84.1	1.9e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126956_32	UniRef90_A0A8D9PDS3	316.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0126956_32	748224.HMPREF9436_03356	105.0	1.84e-26	Siphovirus Gp157	N/A
Pfam	UHGV-0126956_32	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0126956_32	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126956_34	UniRef90_A0A8D9UH91	308.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0126956_34	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0126956_34	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_36	phrog_22529	48.8	0.000000000000087	N/A	unknown function
UniRef90	UHGV-0126956_36	UniRef90_A0A8D9UHA1	312.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0126956_36	658088.HMPREF0987_02675	66.2	0.00000000015	peptidase	N/A
Pfam	UHGV-0126956_36	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0126956_36	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0126956_36	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126956_37	UniRef90_A0A8D9PDM8	113.0	1.14e-31	Pyocin activator protein	N/A
UniRef90	UHGV-0126956_38	UniRef90_UPI001CD6A7E5	77.0	3.21e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0126956_38	718252.FP2_06860	75.9	1.54e-17	N/A	N/A
structural_annotation	UHGV-0126956_38	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0126956_39	K22300	69.0	9.7e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0126956_39	phrog_8	58.5	1.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0126956_39	UniRef90_A0A841R4B0	102.0	1.95e-25	Transcriptional regulator with XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0126956_39	1262914.BN533_01956	99.4	4.5e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0126956_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0126956_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0126956_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126956_40	UniRef90_A0A8D9PDV1	149.0	4.2039e-45	Glycophorin A	N/A
UniRef90	UHGV-0126956_41	UniRef90_A0A8D9PDV2	153.0	0	DNA methyl phosphotriester repair domain protein	N/A
eggNOG-mapper	UHGV-0126956_41	1226325.HMPREF1548_05412	68.6	0.000000000000594	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0126956_41	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0126956_42	UniRef90_A0A8D9UHA6	270.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0126956_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0126956_42	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0126956_43	K14059	152.1	5.60519e-45	int; integrase	N/A
PHROG	UHGV-0126956_43	phrog_1	165.6	0	integrase	integration and excision
UniRef90	UHGV-0126956_43	UniRef90_A0A8D9UGU2	693.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0126956_43	693746.OBV_41260	284.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0126956_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0126956_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0126956_43	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126956_44	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_45	phrog_20016	185.4	0	N/A	unknown function
UniRef90	UHGV-0126956_45	UniRef90_A0A285PT46	188.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0126956_45	1226322.HMPREF1545_00077	168.0	0	N/A	N/A
structural_annotation	UHGV-0126956_45	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_46	phrog_16490	112.0	2.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0126956_46	1408437.JNJN01000043_gene803	173.0	0	N/A	N/A
PHROG	UHGV-0126956_47	phrog_22984	76.2	3.9e-22	N/A	unknown function
PHROG	UHGV-0126956_48	phrog_21718	100.9	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0126956_48	397290.C810_05210	68.6	0.00000000000178	N/A	N/A
PHROG	UHGV-0126956_49	phrog_3754	94.2	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0126956_49	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-0126956_50	phrog_22978	904.1	0	N/A	unknown function
UniRef90	UHGV-0126956_50	UniRef90_UPI001C019A6F	423.0	0	OmpH family outer membrane protein	N/A
eggNOG-mapper	UHGV-0126956_50	1410650.JHWL01000003_gene2814	286.0	0	N/A	N/A
Pfam	UHGV-0126956_50	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0126956_51	1410650.JHWL01000003_gene2815	65.5	0.00000000457	N/A	N/A
UniRef90	UHGV-0126956_52	UniRef90_A0A8D9UGT1	152.0	1.4013e-45	Sigma C capsid protein	N/A
PHROG	UHGV-0126956_53	phrog_511	223.0	0	internal virion protein	head and packaging
UniRef90	UHGV-0126956_53	UniRef90_A0A8D9UH72	962.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0126956_53	1226322.HMPREF1545_00785	317.0	0	N/A	N/A
structural_annotation	UHGV-0126956_53	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_54	phrog_12105	89.8	5.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0126956_54	1519439.JPJG01000060_gene1891	61.6	0.000000000144	N/A	N/A
PHROG	UHGV-0126956_55	phrog_435	61.2	2.2e-17	endolysin	lysis
UniRef90	UHGV-0126956_55	UniRef90_A0A8D9PDS4	457.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0126956_55	1226322.HMPREF1545_01953	89.0	1.84e-18	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0126956_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0126956_55	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_56	phrog_881	89.6	1.7e-26	holin	lysis
UniRef90	UHGV-0126956_56	UniRef90_A0A8D9PDR9	99.4	6.62e-26	Holin	N/A
eggNOG-mapper	UHGV-0126956_56	742740.HMPREF9474_02251	84.0	1.32e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0126956_56	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0126956_56	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0126956_57	phrog_4105	102.3	3e-30	N/A	unknown function
UniRef90	UHGV-0126956_57	UniRef90_A0A8D9UHA9	184.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0126956_57	411460.RUMTOR_01326	140.0	4.72938e-42	N/A	N/A
PHROG	UHGV-0126956_59	phrog_2310	55.3	6.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0126956_59	1151292.QEW_0364	51.6	0.0000000238	N/A	N/A
PHROG	UHGV-0126956_62	phrog_2295	51.8	0.0000000000000049	N/A	unknown function
Pfam	UHGV-0126956_62	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0126956_62	PF21722	N/A	N/A	N/A	N/A
Pfam	UHGV-0126956_63	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0126956_63	PF21722	N/A	N/A	N/A	N/A