UHGV-0128821 (vOTU-119474)

Viral Genome: UHGV-0128821

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0128821
vOTU ID	vOTU-119474
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_326813
Associated BioSample	SAMN00792099
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.8 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.02
Jumbo phage	No

Genome content
Genome length (bp)	22,439
GC content	43.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	92%
Average CDS length (bps)	576.08
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0128821_1	UniRef90_A0A413WS40	107.0	1.07e-29	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-0128821_1	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0128821_1	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0128821_2	UniRef90_UPI00164D7607	70.1	0.0000000000000932	N/A	N/A
KOfam	UHGV-0128821_3	K03733	204.9	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0128821_3	phrog_1	151.5	8.40779e-45	integrase	integration and excision
UniRef90	UHGV-0128821_3	UniRef90_A0A174XQN6	683.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0128821_3	762984.HMPREF9445_01343	243.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0128821_3	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0128821_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0128821_3	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0128821_3	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_4	phrog_25231	45.3	0.0000000000014	N/A	unknown function
structural_annotation	UHGV-0128821_4	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_5	phrog_6568	82.0	4.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0128821_5	742740.HMPREF9474_02283	53.5	0.00000000853	N/A	N/A
PHROG	UHGV-0128821_6	phrog_36	41.4	0.000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0128821_6	UniRef90_A0A174XW92	282.0	0	Phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-0128821_6	1122919.KB905569_gene2945	55.8	0.0000000645	Transcriptional regulator, RinA family	N/A
NCBIFam	UHGV-0128821_6	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0128821_6	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0128821_7	K04763	116.2	4e-34	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0128821_7	phrog_216	178.0	0	integrase	integration and excision
UniRef90	UHGV-0128821_7	UniRef90_A0A174XIE7	367.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0128821_7	1235793.C809_02656	233.0	0	PFAM Phage integrase family	N/A
Pfam	UHGV-0128821_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0128821_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0128821_7	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_9	phrog_119	54.0	0.0000000000000026	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0128821_9	UniRef90_A0A174XSZ8	253.0	0	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0128821_9	318464.IO99_13775	128.0	4.36e-37	HNH nucleases	N/A
COG	UHGV-0128821_9	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0128821_10	phrog_1066	88.2	7.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0128821_10	1235793.C809_01916	169.0	0	N/A	N/A
structural_annotation	UHGV-0128821_10	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_11	phrog_9	399.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0128821_11	UniRef90_A0A174XWB0	1144.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0128821_11	1235793.C809_01917	887.0	0	Phage Terminase	N/A
Pfam	UHGV-0128821_11	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0128821_11	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0128821_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0128821_11	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_12	phrog_12	193.9	0	portal protein	head and packaging
UniRef90	UHGV-0128821_12	UniRef90_A0A174XIL2	823.0	0	Prophage lambdaBa04, portal protein	N/A
eggNOG-mapper	UHGV-0128821_12	1235793.C809_01918	512.0	0	Phage portal protein	N/A
Pfam	UHGV-0128821_12	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0128821_12	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0128821_12	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0128821_13	K01358	134.1	1.7e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0128821_13	phrog_94	217.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0128821_13	UniRef90_A0A174XQS2	459.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0128821_13	1280689.AUJC01000011_gene1520	216.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0128821_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0128821_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0128821_13	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_14	phrog_10	169.9	0	major head protein	head and packaging
UniRef90	UHGV-0128821_14	UniRef90_A0A174XIH6	752.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0128821_14	1280689.AUJC01000011_gene1521	456.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0128821_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0128821_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0128821_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0128821_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_15	phrog_5223	76.1	3.2e-22	neck protein	connector
UniRef90	UHGV-0128821_15	UniRef90_A0A174XSK5	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-0128821_15	411465.PEPMIC_00737	93.2	8.52e-24	N/A	N/A
structural_annotation	UHGV-0128821_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_16	phrog_1951	41.1	0.00000000000031	head-tail adaptor	connector
UniRef90	UHGV-0128821_16	UniRef90_A0A098AU87	54.7	0.000000149	Gp16_SPP1: putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0128821_16	596315.HMPREF0634_0222	51.2	0.000000568	head-tail adaptor	N/A
COG	UHGV-0128821_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0128821_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_17	phrog_5	40.4	0.000000000075	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0128821_17	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0128821_18	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_19	phrog_88	105.2	6.3e-31	major tail protein	tail
UniRef90	UHGV-0128821_19	UniRef90_A0A174XIJ5	369.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-0128821_19	742740.HMPREF9474_04299	237.0	0	N/A	N/A
NCBIFam	UHGV-0128821_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0128821_19	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_22	phrog_33680	166.8	0	N/A	unknown function
UniRef90	UHGV-0128821_22	UniRef90_A0A174XMM8	551.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0128821_22	742740.HMPREF9474_04296	612.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0128821_22	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0128821_22	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_23	phrog_37549	104.3	2e-31	virion structural protein	head and packaging
UniRef90	UHGV-0128821_23	UniRef90_UPI00189CF998	1062.0	0	DNRLRE domain-containing protein	N/A
eggNOG-mapper	UHGV-0128821_23	796940.HMPREF9628_00134	63.2	0.000000173	N/A	N/A
NCBIFam	UHGV-0128821_23	NF033679.1	N/A	N/A	DNRLRE domain-containing protein	N/A
structural_annotation	UHGV-0128821_23	PF06995,PF02010,MF_04116,TIGR02126,NF041431,COG3499,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_24	phrog_26795	236.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0128821_24	742740.HMPREF9474_04294	373.0	0	N/A	N/A
structural_annotation	UHGV-0128821_24	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_25	phrog_12764	50.3	0.000000000000035	N/A	unknown function
structural_annotation	UHGV-0128821_25	PF01176,MF_00085,TIGR00523,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-0128821_26	K07296	62.7	4.3e-18	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-0128821_26	phrog_6320	76.0	4.5e-22	tail fiber protein	tail
UniRef90	UHGV-0128821_26	UniRef90_A0A174XQW7	469.0	0	Collagen triple helix repeat-containing protein	N/A
Pfam	UHGV-0128821_26	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0128821_26	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0128821_27	K24213	85.9	4.5e-25	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0128821_27	phrog_5073	104.6	9.7e-31	tail fiber protein	tail
UniRef90	UHGV-0128821_27	UniRef90_UPI00189F6B9C	101.0	3.85e-23	collagen-like protein	N/A
Pfam	UHGV-0128821_27	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-0128821_29	742740.HMPREF9474_04291	152.0	0	N/A	N/A
structural_annotation	UHGV-0128821_30	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0128821_31	phrog_1863	81.8	1.9e-24	N/A	unknown function
UniRef90	UHGV-0128821_31	UniRef90_UPI001F223E8B	120.0	4.21e-34	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0128821_31	1226322.HMPREF1545_04027	79.7	9.8e-19	N/A	N/A
PHROG	UHGV-0128821_32	phrog_1129	74.7	8.8e-22	holin	lysis
UniRef90	UHGV-0128821_32	UniRef90_A0A3E2U8R6	145.0	8.12753e-44	Enolase	N/A
eggNOG-mapper	UHGV-0128821_32	742740.HMPREF9474_03522	112.0	2.6e-31	N/A	N/A
Pfam	UHGV-0128821_32	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0128821_32	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0128821_33	K00689	48.7	0.000000000000031	E2.4.1.5; dextransucrase [EC:2.4.1.5]	N/A
PHROG	UHGV-0128821_33	phrog_38078	87.4	2.4e-25	N/A	unknown function
UniRef90	UHGV-0128821_33	UniRef90_A0A174XEM4	491.0	0	Cell wall binding repeat-containing protein	N/A
eggNOG-mapper	UHGV-0128821_33	1304866.K413DRAFT_1245	362.0	0	Putative cell wall binding repeat	N/A
Pfam	UHGV-0128821_33	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0128821_33	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-0128821_33	PF19127,PF05382,MF_00727,TIGR04035,NF033742,COG5263	N/A	N/A	N/A	N/A
KOfam	UHGV-0128821_34	K01356	254.0	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0128821_34	phrog_811	78.4	5.4e-23	UmuD-like protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0128821_34	UniRef90_A0A174X6P3	409.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0128821_34	1163671.JAGI01000002_gene1667	307.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0128821_34	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
Pfam	UHGV-0128821_34	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-0128821_34	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-0128821_34	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
HAMAP	UHGV-0128821_34	MF_00015	N/A	N/A	LexA repressor [lexA]	N/A
structural_annotation	UHGV-0128821_34	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0128821_36	742733.HMPREF9469_01795	70.5	0.0000000000000194	N/A	N/A