UHGV-0129488 (vOTU-042371)

Viral Genome: UHGV-0129488

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0129488
vOTU ID	vOTU-042371
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_326960
Associated BioSample	SAMN00715138
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.47 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.45
Jumbo phage	No

Genome content
Genome length (bp)	30,930
GC content	41.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	93%
Average CDS length (bps)	584.57
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0129488_1	UniRef90_A0A7X8VAU8	142.0	9.99967e-42	Phage tail assembly protein	N/A
eggNOG-mapper	UHGV-0129488_1	411902.CLOBOL_06816	237.0	0	N/A	N/A
KOfam	UHGV-0129488_2	K17733	149.7	1.96182e-44	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0129488_2	phrog_2649	134.4	1e-39	endolysin	lysis
UniRef90	UHGV-0129488_2	UniRef90_R0BKC0	520.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0129488_2	742733.HMPREF9469_01368	470.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0129488_2	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0129488_2	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0129488_2	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129488_3	UniRef90_A0A352P5F4	47.0	0.00000497	XkdX family protein	N/A
eggNOG-mapper	UHGV-0129488_3	1304866.K413DRAFT_3056	44.3	0.00000937	N/A	N/A
structural_annotation	UHGV-0129488_3	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_4	phrog_12931	53.8	0.0000000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0129488_5	411902.CLOBOL_05647	118.0	6.23e-29	nuclear chromosome segregation	N/A
COG	UHGV-0129488_5	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0129488_6	phrog_17196	85.4	5.6e-25	kinase	other
UniRef90	UHGV-0129488_6	UniRef90_A0A2M8Z316	197.0	0	Collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0129488_6	1298920.KI911353_gene2674	206.0	0	N/A	N/A
structural_annotation	UHGV-0129488_6	PF13619,COG3536	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_8	phrog_18190	188.2	0	N/A	unknown function
UniRef90	UHGV-0129488_8	UniRef90_UPI001D15C06A	1038.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0129488_8	1298920.KI911353_gene2679	321.0	0	N/A	N/A
Pfam	UHGV-0129488_8	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0129488_8	PF14594,NF033848,COG3501	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_9	phrog_1194	44.0	0.0000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0129488_9	1304866.K413DRAFT_3047	114.0	6.31e-31	N/A	N/A
Pfam	UHGV-0129488_9	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0129488_9	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_10	phrog_1535	218.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0129488_10	UniRef90_A0A1C5N853	515.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0129488_10	1298920.KI911353_gene2068	197.0	0	domain protein	N/A
COG	UHGV-0129488_10	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_11	phrog_706	114.2	1.1e-33	N/A	unknown function
UniRef90	UHGV-0129488_11	UniRef90_UPI001D1485B4	365.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0129488_11	411459.RUMOBE_01383	191.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0129488_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0129488_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_12	phrog_11299	81.2	8.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0129488_12	33035.JPJF01000106_gene3125	74.7	0.00000000000000292	N/A	N/A
structural_annotation	UHGV-0129488_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_13	phrog_3099	120.0	1.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0129488_13	33035.JPJF01000106_gene3126	210.0	0	N/A	N/A
structural_annotation	UHGV-0129488_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_14	phrog_3266	98.1	6.5e-29	tail completion	connector
eggNOG-mapper	UHGV-0129488_14	476272.RUMHYD_01781	157.0	0	N/A	N/A
structural_annotation	UHGV-0129488_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_15	phrog_556	64.6	6.8e-19	minor head protein	head and packaging
UniRef90	UHGV-0129488_15	UniRef90_UPI0008B4CFF0	228.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0129488_15	476272.RUMHYD_01780	163.0	0	N/A	N/A
Pfam	UHGV-0129488_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0129488_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_16	phrog_3366	98.7	5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0129488_16	476272.RUMHYD_01779	152.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0129488_16	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_18	phrog_8680	242.6	0	N/A	unknown function
UniRef90	UHGV-0129488_18	UniRef90_UPI0015711ED3	439.0	0	N/A	N/A
eggNOG-mapper	UHGV-0129488_18	411470.RUMGNA_02208	309.0	0	N/A	N/A
Pfam	UHGV-0129488_18	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0129488_18	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_19	phrog_1129	71.9	6.2e-21	holin	lysis
UniRef90	UHGV-0129488_19	UniRef90_A0A417JD09	149.0	4.2039e-45	Enolase	N/A
eggNOG-mapper	UHGV-0129488_19	411461.DORFOR_00721	129.0	3.73e-38	N/A	N/A
Pfam	UHGV-0129488_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0129488_19	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_20	phrog_419	106.2	3.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0129488_20	476272.RUMHYD_03324	137.0	4.46005e-41	N/A	N/A
structural_annotation	UHGV-0129488_20	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_21	phrog_541	87.2	1.1e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0129488_21	476272.RUMHYD_01778	127.0	4.78e-35	N/A	N/A
PHROG	UHGV-0129488_22	phrog_544	163.5	0	major head protein	head and packaging
UniRef90	UHGV-0129488_22	UniRef90_R0BKA1	719.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0129488_22	1232453.BAIF02000011_gene3359	394.0	0	N/A	N/A
Pfam	UHGV-0129488_22	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0129488_22	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_23	phrog_194	78.5	1.1e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0129488_23	UniRef90_UPI001D14C9C8	300.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0129488_23	476272.RUMHYD_01775	179.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0129488_23	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0129488_23	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129488_25	UniRef90_N9YMZ1	176.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0129488_25	411470.RUMGNA_03786	63.9	0.0000000000177	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0129488_25	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0129488_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0129488_25	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_26	phrog_374	52.0	1.6e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0129488_26	UniRef90_A0A0U5PL36	322.0	0	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0129488_26	1304866.K413DRAFT_4685	215.0	0	N/A	N/A
structural_annotation	UHGV-0129488_26	PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_27	phrog_28802	247.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0129488_27	476272.RUMHYD_01772	255.0	0	N/A	N/A
PHROG	UHGV-0129488_28	phrog_20016	52.1	0.0000000000000087	N/A	unknown function
eggNOG-mapper	UHGV-0129488_28	1235790.C805_00062	51.6	0.00000214	N/A	N/A
structural_annotation	UHGV-0129488_28	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_30	phrog_16490	203.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0129488_30	658655.HMPREF0988_00917	176.0	0	N/A	N/A
PHROG	UHGV-0129488_31	phrog_22984	74.1	2.5e-23	N/A	unknown function
PHROG	UHGV-0129488_32	phrog_21718	162.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0129488_32	476272.RUMHYD_01768	157.0	0	N/A	N/A
AcrCatalog	UHGV-0129488_33	cluster_29073	99.0	1.03e-30	NA	N/A
PHROG	UHGV-0129488_34	phrog_25567	72.2	5.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0129488_34	742740.HMPREF9474_00058	67.4	0.000000000000428	N/A	N/A
AcrCatalog	UHGV-0129488_34	cluster_37554	152.0	0	NA	N/A
KOfam	UHGV-0129488_35	K19118	239.3	0	csd2, cas7; CRISPR-associated protein Csd2	N/A
UniRef90	UHGV-0129488_35	UniRef90_E7GTP3	397.0	0	Csd2 family CRISPR-associated protein	N/A
eggNOG-mapper	UHGV-0129488_35	742740.HMPREF9474_04288	397.0	0	N/A	N/A
PADLOC	UHGV-0129488_35	cas_Csd2	266.8	0	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
Pfam	UHGV-0129488_35	PF05107	N/A	N/A	CRISPR-associated protein Cas7	Cas_Cas7
NCBIFam	UHGV-0129488_35	TIGR02589.1	N/A	N/A	type I-C CRISPR-associated protein Cas7/Csd2	N/A
COG	UHGV-0129488_35	COG3649	N/A	N/A	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	N/A
structural_annotation	UHGV-0129488_35	PF05107,TIGR02589,COG3649	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129488_36	UniRef90_A0A843HPX3	79.7	2.47e-18	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0129488_36	1235790.C805_00057	57.0	0.000000000413	N/A	N/A
structural_annotation	UHGV-0129488_36	PF13404,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129488_37	UniRef90_A0A417UWY7	83.6	8.07e-19	CTP synthase	N/A
eggNOG-mapper	UHGV-0129488_37	411490.ANACAC_00705	94.0	6.96e-24	N/A	N/A
PHROG	UHGV-0129488_38	phrog_3754	104.9	7e-31	N/A	unknown function
eggNOG-mapper	UHGV-0129488_38	476272.RUMHYD_01764	218.0	0	N/A	N/A
PHROG	UHGV-0129488_39	phrog_581	268.7	0	minor head protein	head and packaging
UniRef90	UHGV-0129488_39	UniRef90_A0A1C6CDG2	612.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0129488_39	33035.JPJF01000106_gene3134	448.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0129488_39	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0129488_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0129488_39	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_40	phrog_533	283.3	0	portal protein	head and packaging
UniRef90	UHGV-0129488_40	UniRef90_A0A1C6CDM8	676.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0129488_40	33035.JPJF01000106_gene3135	518.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0129488_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_42	phrog_374	159.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0129488_42	UniRef90_A0A3E2U4F6	317.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0129488_42	411462.DORLON_00791	153.0	1.82169e-44	N/A	N/A
Pfam	UHGV-0129488_42	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0129488_42	PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-0129488_43	K06909	188.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0129488_43	phrog_18557	88.4	2.1e-26	terminase large subunit	head and packaging
UniRef90	UHGV-0129488_43	UniRef90_A0A3E2U4P7	567.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0129488_43	33035.JPJF01000106_gene3136	280.0	0	Terminase small subunit	N/A
Pfam	UHGV-0129488_43	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0129488_43	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0129488_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0129488_43	PF17288,PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0129488_44	phrog_59	157.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0129488_44	UniRef90_A0A414AG65	278.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0129488_44	1260356.D920_01718	129.0	1.19e-35	HNH endonuclease	N/A
PADLOC	UHGV-0129488_44	HEase_00016	83.2	6.7e-24	homing endonuclease	RM
Pfam	UHGV-0129488_44	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0129488_44	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0129488_44	PF07463	N/A	N/A	N/A	N/A
KOfam	UHGV-0129488_45	K06909	117.5	1.6e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0129488_45	phrog_3717	92.4	4.9e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0129488_45	UniRef90_A0A0U5PLY3	295.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0129488_45	1235800.C819_00493	185.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0129488_45	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0129488_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0129488_45	PF04466	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129488_46	UniRef90_A0A3E2U5Z1	255.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0129488_46	1235790.C805_00037	150.0	1.12104e-44	N/A	N/A
Pfam	UHGV-0129488_46	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-0129488_46	PF13542	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0129488_48	476272.RUMHYD_01751	72.4	0.00000000000000264	N/A	N/A
AcrCatalog	UHGV-0129488_48	cluster_11670	98.2	8.29e-30	NA	N/A
KOfam	UHGV-0129488_49	K04763	184.2	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0129488_49	phrog_1	158.2	0	integrase	integration and excision
UniRef90	UHGV-0129488_49	UniRef90_UPI001D14C144	513.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0129488_49	1298920.KI911353_gene2699	399.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0129488_49	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0129488_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0129488_49	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0129488_49	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A