UHGV-0129531 (vOTU-155482)

Viral Genome: UHGV-0129531

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0129531
vOTU ID	vOTU-155482
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_313014
Associated BioSample	SAMEA4370582
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.08 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9749
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.64
Jumbo phage	No

Genome content
Genome length (bp)	23,077
GC content	58.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	93%
Average CDS length (bps)	629.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0129531_2	phrog_1863	69.3	3.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0129531_2	693746.OBV_18260	110.0	6.4e-31	N/A	N/A
KOfam	UHGV-0129531_3	K07273	180.4	0	acm; lysozyme	N/A
PHROG	UHGV-0129531_3	phrog_291	156.1	0	endolysin	lysis
UniRef90	UHGV-0129531_3	UniRef90_A0A367G061	513.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0129531_3	411471.SUBVAR_06927	315.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0129531_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0129531_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0129531_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0129531_3	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0129531_5	476272.RUMHYD_00002	81.3	0.000000000000588	N/A	N/A
structural_annotation	UHGV-0129531_5	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0129531_7	K07741	73.9	4.9e-21	antB; anti-repressor protein	N/A
PHROG	UHGV-0129531_7	phrog_130	248.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0129531_7	UniRef90_A0A7I8D1H8	364.0	0	Putative antirepressor - phage associated	N/A
eggNOG-mapper	UHGV-0129531_7	1232449.BAHV02000010_gene2739	283.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0129531_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0129531_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0129531_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0129531_7	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0129531_9	PF09454,MF_00644	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_11	phrog_1535	191.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0129531_11	UniRef90_A0A1C6JAZ8	194.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0129531_11	665956.HMPREF1032_03628	273.0	0	domain protein	N/A
COG	UHGV-0129531_11	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_12	phrog_706	95.8	4.6e-28	N/A	unknown function
UniRef90	UHGV-0129531_12	UniRef90_UPI0013141117	375.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0129531_12	665956.HMPREF1032_03058	236.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0129531_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0129531_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_13	phrog_11299	86.5	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0129531_13	665956.HMPREF1032_03059	125.0	4.41e-35	N/A	N/A
structural_annotation	UHGV-0129531_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_14	phrog_3099	67.9	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0129531_14	665956.HMPREF1032_03060	246.0	0	N/A	N/A
structural_annotation	UHGV-0129531_14	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_15	phrog_3266	74.9	9.7e-22	tail completion	connector
eggNOG-mapper	UHGV-0129531_15	663278.Ethha_0492	60.1	0.00000000141	N/A	N/A
structural_annotation	UHGV-0129531_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_16	phrog_556	94.0	1.1e-27	minor head protein	head and packaging
UniRef90	UHGV-0129531_16	UniRef90_UPI001958E7C1	223.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0129531_16	665956.HMPREF1032_03062	175.0	0	Minor capsid protein	N/A
Pfam	UHGV-0129531_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0129531_16	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0129531_17	411471.SUBVAR_06991	57.4	0.00000000347	N/A	N/A
Pfam	UHGV-0129531_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0129531_17	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_18	phrog_541	56.7	4.1e-16	head-tail adaptor	connector
eggNOG-mapper	UHGV-0129531_18	663278.Ethha_0495	76.3	5.21e-16	N/A	N/A
PHROG	UHGV-0129531_19	phrog_10	182.9	0	major head protein	head and packaging
UniRef90	UHGV-0129531_19	UniRef90_A0A367GHJ2	758.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0129531_19	663278.Ethha_0496	525.0	0	Phage capsid family	N/A
Pfam	UHGV-0129531_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0129531_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0129531_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0129531_19	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_20	phrog_194	60.5	2.1e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0129531_20	UniRef90_E6U604	160.0	0	Minor structural GP20 protein	N/A
eggNOG-mapper	UHGV-0129531_20	663278.Ethha_0497	160.0	0	N/A	N/A
Pfam	UHGV-0129531_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0129531_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_21	phrog_581	349.2	0	minor head protein	head and packaging
UniRef90	UHGV-0129531_21	UniRef90_UPI0019583C8A	511.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0129531_21	748224.HMPREF9436_03339	459.0	0	N/A	N/A
Pfam	UHGV-0129531_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0129531_21	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-0129531_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0129531_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_22	phrog_533	360.1	0	portal protein	head and packaging
UniRef90	UHGV-0129531_22	UniRef90_A0A367GFE3	919.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0129531_22	663278.Ethha_0090	566.0	0	N/A	N/A
Pfam	UHGV-0129531_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0129531_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0129531_23	K06909	134.0	1.5e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0129531_23	phrog_2	157.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0129531_23	UniRef90_A0A367GH60	869.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0129531_23	1120746.CCNL01000014_gene2093	548.0	0	DNA packaging	N/A
Pfam	UHGV-0129531_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0129531_23	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0129531_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0129531_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0129531_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_24	phrog_606	89.3	3.9e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0129531_24	UniRef90_UPI00195648BB	180.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0129531_24	397290.C810_05185	159.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0129531_24	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0129531_24	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0129531_25	K22299	57.6	2.8e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0129531_25	UniRef90_R5YVK6	95.1	5.91e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0129531_25	59374.Fisuc_2499	77.0	1.25e-16	sequence-specific DNA binding	N/A
PADLOC	UHGV-0129531_25	retron_type_VI_hth_cluster2_1	45.8	0.0000000000012	N/A	Retron
Pfam	UHGV-0129531_25	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0129531_25	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0129531_25	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_26	phrog_1914	63.5	3.2e-18	N/A	unknown function
UniRef90	UHGV-0129531_26	UniRef90_A0A3M8DQA0	146.0	9.39991e-42	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0129531_26	997296.PB1_16109	124.0	9.4e-34	N/A	N/A
Pfam	UHGV-0129531_26	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0129531_26	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0129531_26	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0129531_28	phrog_36	75.1	1.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0129531_28	UniRef90_A0A353BRJ1	95.5	1.5e-22	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0129531_28	411471.SUBVAR_05843	137.0	5.79e-40	N/A	N/A
structural_annotation	UHGV-0129531_28	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0129531_33	K01160	41.9	0.000000000025	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0129531_33	phrog_140	90.9	1.6e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0129531_33	UniRef90_A0A367GHC7	286.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0129531_33	394503.Ccel_3302	157.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0129531_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0129531_33	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0129531_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0129531_34	K07505	216.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0129531_34	phrog_2597	425.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0129531_34	UniRef90_UPI001966D711	519.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0129531_34	999413.HMPREF1094_00232	375.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0129531_34	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0129531_34	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0129531_34	PF13481,MF_00348,NF006606,COG3598	N/A	N/A	N/A	N/A