UHGV-0130215 (vOTU-061864)

Viral Genome: UHGV-0130215

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0130215
vOTU ID	vOTU-061864
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_341524
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.84 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.99
Jumbo phage	No

Genome content
Genome length (bp)	34,544
GC content	59.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	93%
Average CDS length (bps)	518.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0130215_1	1519439.JPJG01000060_gene1895	58.2	0.0000000403	N/A	N/A
structural_annotation	UHGV-0130215_1	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_5	phrog_6918	95.2	4.5e-28	holin	lysis
UniRef90	UHGV-0130215_5	UniRef90_A0A316QCY7	102.0	3.48e-26	Holin	N/A
eggNOG-mapper	UHGV-0130215_5	1297617.JPJD01000020_gene301	100.0	2.43e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0130215_5	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0130215_5	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_6	phrog_14030	137.0	1.3e-40	N/A	unknown function
UniRef90	UHGV-0130215_6	UniRef90_R6LL81	238.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0130215_6	1121866.AUGK01000003_gene1444	95.9	5.76e-20	amidase activity	N/A
COG	UHGV-0130215_6	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0130215_9	phrog_16490	54.0	0.0000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-0130215_9	641112.ACOK01000103_gene525	54.3	0.00000208	N/A	N/A
structural_annotation	UHGV-0130215_10	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0130215_11	UniRef90_A0A7M1RTM1	77.0	0.0000000000000157	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0130215_11	1378168.N510_03079	69.7	0.00000000000384	N/A	N/A
KOfam	UHGV-0130215_12	K06400	252.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0130215_12	phrog_95	267.2	0	integrase	integration and excision
UniRef90	UHGV-0130215_12	UniRef90_G9YSD9	418.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0130215_12	1408437.JNJN01000002_gene1420	403.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0130215_12	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0130215_12	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0130215_12	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0130215_12	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0130215_12	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0130215_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0130215_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0130215_13	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_14	phrog_10292	75.4	4e-22	N/A	unknown function
UniRef90	UHGV-0130215_14	UniRef90_UPI00101CA94E	98.2	1.3e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0130215_14	1198452.Jab_1c20720	82.0	4.16e-18	TM2 domain	N/A
Pfam	UHGV-0130215_14	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0130215_14	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0130215_14	COG2314	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0130215_15	552398.HMPREF0866_02158	53.9	0.00000342	NOG18738 non supervised orthologous group	N/A
COG	UHGV-0130215_15	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-0130215_15	PF02805	N/A	N/A	N/A	N/A
KOfam	UHGV-0130215_17	K18830	55.7	0.0000000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0130215_17	phrog_8	55.8	7.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0130215_17	UniRef90_A0A2U1BEG8	126.0	3.51e-35	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0130215_17	445972.ANACOL_03315	112.0	1.4e-30	N/A	N/A
PADLOC	UHGV-0130215_17	retron_type_VI_hth_cluster2_1	41.4	0.000000000032	N/A	Retron
Pfam	UHGV-0130215_17	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0130215_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0130215_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130215_20	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130215_22	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130215_23	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_27	phrog_424	97.0	2.3e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0130215_27	UniRef90_A0A1Q6JI14	353.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0130215_27	1410628.JNKS01000054_gene544	300.0	0	N/A	N/A
Pfam	UHGV-0130215_27	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0130215_27	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0130215_27	PF01507,MF_01161,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_28	phrog_3136	136.6	8.60005e-41	N/A	unknown function
UniRef90	UHGV-0130215_28	UniRef90_A0A3D0HBD2	170.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0130215_28	717772.THIAE_09670	52.4	0.00000151	ASCH	N/A
Pfam	UHGV-0130215_28	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0130215_28	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0130215_28	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_29	phrog_38832	80.8	9.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0130215_29	1232443.BAIA02000078_gene48	111.0	8.6e-30	N/A	N/A
PHROG	UHGV-0130215_31	phrog_32087	50.1	0.000000000000044	N/A	unknown function
UniRef90	UHGV-0130215_31	UniRef90_A0A4D7AZG9	77.4	6.5e-17	N/A	N/A
eggNOG-mapper	UHGV-0130215_31	693746.OBV_25250	65.1	0.00000000000198	N/A	N/A
Pfam	UHGV-0130215_31	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0130215_31	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_33	phrog_374	56.6	5.7e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0130215_33	411467.BACCAP_02633	67.8	0.00000000000489	N/A	N/A
PHROG	UHGV-0130215_38	phrog_3584	115.8	3.6e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0130215_38	537013.CLOSTMETH_02141	74.7	0.000000000000129	N/A	N/A
structural_annotation	UHGV-0130215_38	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0130215_39	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-0130215_39	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_40	phrog_119	49.8	0.000000000000047	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130215_40	UniRef90_A0A174XSZ8	126.0	1.45e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0130215_40	1235793.C809_01915	123.0	1.5e-34	HNH endonuclease	N/A
COG	UHGV-0130215_40	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0130215_41	phrog_1066	129.1	1.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-0130215_41	1341151.ASZU01000004_gene265	125.0	1.14e-35	N/A	N/A
structural_annotation	UHGV-0130215_41	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_42	phrog_9	373.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0130215_42	UniRef90_A0A1Y3W5R1	788.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0130215_42	1203606.HMPREF1526_00981	726.0	0	Terminase	N/A
Pfam	UHGV-0130215_42	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0130215_42	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0130215_42	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0130215_42	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_43	phrog_12	181.9	0	portal protein	head and packaging
UniRef90	UHGV-0130215_43	UniRef90_C4GAS6	503.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0130215_43	626523.GCWU000342_01027	503.0	0	Portal protein	N/A
Pfam	UHGV-0130215_43	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0130215_43	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0130215_43	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0130215_44	K01358	133.1	3.3e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0130215_44	phrog_94	203.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0130215_44	UniRef90_UPI0018979DC8	205.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0130215_44	1280689.AUJC01000011_gene1520	192.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0130215_44	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0130215_44	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0130215_44	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_45	phrog_10	181.2	0	major head protein	head and packaging
UniRef90	UHGV-0130215_45	UniRef90_UPI00189AE5FE	401.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0130215_45	1280689.AUJC01000011_gene1521	386.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0130215_45	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0130215_45	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0130215_45	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0130215_45	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_46	phrog_5223	43.8	0.0000000000036	neck protein	connector
UniRef90	UHGV-0130215_46	UniRef90_E6MGY0	58.5	0.00000000355	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0130215_46	887929.HMP0721_1264	58.5	0.000000000596	N/A	N/A
PHROG	UHGV-0130215_47	phrog_1951	73.3	2.7e-21	head-tail adaptor	connector
UniRef90	UHGV-0130215_47	UniRef90_A0A1F8UNT5	62.8	0.0000000000989	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0130215_47	1094508.Tsac_2422	51.2	0.000000631	Phage head-tail joining protein	N/A
Pfam	UHGV-0130215_47	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0130215_47	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0130215_47	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0130215_47	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0130215_48	1487921.DP68_11350	58.2	0.00000000157	N/A	N/A
structural_annotation	UHGV-0130215_48	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_49	phrog_5	45.0	0.0000000000024	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0130215_49	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_50	phrog_88	78.5	9.4e-23	major tail protein	tail
UniRef90	UHGV-0130215_50	UniRef90_UPI000BA43BBF	117.0	5.38e-30	major tail protein	N/A
eggNOG-mapper	UHGV-0130215_50	411459.RUMOBE_00930	107.0	1.02e-26	N/A	N/A
NCBIFam	UHGV-0130215_50	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0130215_50	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130215_51	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_53	phrog_33680	144.1	5.70328e-43	N/A	unknown function
UniRef90	UHGV-0130215_53	UniRef90_A0A1M6L1P7	269.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0130215_53	1195236.CTER_5104	260.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0130215_53	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0130215_53	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_54	phrog_37549	81.1	8.1e-24	virion structural protein	head and packaging
UniRef90	UHGV-0130215_54	UniRef90_A0A3D0W045	213.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0130215_54	1195236.CTER_5103	123.0	2.34e-26	N/A	N/A
structural_annotation	UHGV-0130215_54	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_55	phrog_26795	135.4	1.50001e-40	N/A	unknown function
eggNOG-mapper	UHGV-0130215_55	1195236.CTER_5102	151.0	1.11e-39	N/A	N/A
structural_annotation	UHGV-0130215_55	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130215_56	PF18614,MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130215_58	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0130215_60	phrog_10898	288.8	0	N/A	unknown function
UniRef90	UHGV-0130215_60	UniRef90_A0A7U3NJT3	188.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0130215_60	717606.PaecuDRAFT_2136	68.2	0.000000000207	S-layer homology domain	N/A
COG	UHGV-0130215_60	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0130215_60	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130215_61	PF16408,NF033510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0130215_62	1519439.JPJG01000060_gene1892	51.2	0.00000425	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0130215_62	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A