UHGV-0130944 (vOTU-070454)

Viral Genome: UHGV-0130944

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0130944
vOTU ID	vOTU-070454
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_365782
Associated BioSample	SAMN03283282
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.71
Jumbo phage	No

Genome content
Genome length (bp)	43,442
GC content	59.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	94%
Average CDS length (bps)	681.65
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0130944_1	UniRef90_UPI001A9B9B76	155.0	0	pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0130944_1	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0130944_1	PF00805	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_5	phrog_2118	97.5	1.7e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130944_5	UniRef90_A0A417HX51	208.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0130944_5	693746.OBV_25310	110.0	1.44e-29	HNH endonuclease	N/A
Pfam	UHGV-0130944_5	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0130944_5	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0130944_5	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_11	phrog_156	305.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0130944_11	1410650.JHWL01000003_gene2833	562.0	0	N/A	N/A
structural_annotation	UHGV-0130944_11	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0130944_12	K07584	49.0	0.00000000000013	N/A	N/A
PHROG	UHGV-0130944_12	phrog_4478	50.3	0.000000000000031	peptidase	other
UniRef90	UHGV-0130944_12	UniRef90_A0A357NCE2	61.2	0.000000000633	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0130944_12	706434.HMPREF9429_01254	55.5	0.000000016	Cysteine protease Prp	N/A
Pfam	UHGV-0130944_12	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0130944_12	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130944_12	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_13	phrog_13908	167.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0130944_13	1410650.JHWL01000003_gene2831	100.0	1.66e-21	N/A	N/A
PHROG	UHGV-0130944_14	phrog_1357	204.6	0	major head protein	head and packaging
UniRef90	UHGV-0130944_14	UniRef90_A0A2V2CFL5	556.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0130944_14	1410650.JHWL01000003_gene2830	263.0	0	N/A	N/A
NCBIFam	UHGV-0130944_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0130944_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_16	phrog_12105	119.8	1.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0130944_16	1226322.HMPREF1545_03850	79.3	2.49e-17	N/A	N/A
PHROG	UHGV-0130944_17	phrog_511	202.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0130944_17	1226322.HMPREF1545_00785	313.0	0	N/A	N/A
structural_annotation	UHGV-0130944_17	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130944_18	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_19	phrog_372	261.9	0	tail protein	tail
UniRef90	UHGV-0130944_19	UniRef90_A0A351TJT1	157.0	4.39e-37	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0130944_19	1235802.C823_05263	148.0	9.39e-35	N/A	N/A
Pfam	UHGV-0130944_19	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0130944_19	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0130944_19	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0130944_21	K06909	132.5	4.1e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0130944_21	phrog_979	127.0	2.1e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0130944_21	UniRef90_A0A3C0NMI6	599.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0130944_21	1410650.JHWL01000003_gene2834	554.0	0	N/A	N/A
Pfam	UHGV-0130944_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0130944_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0130944_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_22	phrog_2649	52.1	0.000000000000017	endolysin	lysis
UniRef90	UHGV-0130944_22	UniRef90_A0A1V5RXD7	184.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0130944_22	1410650.JHWL01000003_gene2815	123.0	2.94e-28	N/A	N/A
Pfam	UHGV-0130944_22	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0130944_22	PF01471,TIGR02869,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_23	phrog_22978	604.7	0	N/A	unknown function
UniRef90	UHGV-0130944_23	UniRef90_R5AJI2	753.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0130944_23	1410650.JHWL01000003_gene2814	550.0	0	N/A	N/A
Pfam	UHGV-0130944_23	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
KOfam	UHGV-0130944_26	K01447	88.7	9.6e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0130944_26	phrog_1794	167.4	0	amidase	lysis
UniRef90	UHGV-0130944_26	UniRef90_A0A1Y4NYC1	192.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0130944_26	658088.HMPREF0987_01102	189.0	0	Ami_2	N/A
Pfam	UHGV-0130944_26	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0130944_26	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0130944_26	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0130944_26	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0130944_26	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_27	phrog_4105	46.4	0.00000000000072	N/A	unknown function
PHROG	UHGV-0130944_28	phrog_1129	70.6	1.6e-20	holin	lysis
UniRef90	UHGV-0130944_28	UniRef90_A0A316PMB0	115.0	7.47e-32	Enolase	N/A
eggNOG-mapper	UHGV-0130944_28	665956.HMPREF1032_03272	110.0	1.2e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0130944_28	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0130944_28	PF06946	N/A	N/A	N/A	N/A
Pfam	UHGV-0130944_29	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
eggNOG-mapper	UHGV-0130944_32	445972.ANACOL_01884	93.2	6.91e-23	N/A	N/A
KOfam	UHGV-0130944_33	K14059	139.7	3.80004e-41	int; integrase	N/A
PHROG	UHGV-0130944_33	phrog_1	147.6	1.09301e-43	integrase	integration and excision
UniRef90	UHGV-0130944_33	UniRef90_A0A2Z4QB94	304.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0130944_33	1095750.HMPREF9970_1688	97.4	5.93e-20	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0130944_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0130944_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0130944_33	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130944_34	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_35	phrog_14556	49.2	0.000000000000058	N/A	unknown function
eggNOG-mapper	UHGV-0130944_35	1410653.JHVC01000032_gene1036	72.4	0.000000000000899	domain protein	N/A
COG	UHGV-0130944_35	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0130944_38	K22299	49.6	0.000000000000087	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0130944_38	phrog_3	44.5	0.0000000000063	transcriptional repressor	transcription regulation
UniRef90	UHGV-0130944_38	UniRef90_A0A6A8VJA9	125.0	8.87e-35	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0130944_38	411471.SUBVAR_07015	87.4	1.41e-20	N/A	N/A
Pfam	UHGV-0130944_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0130944_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0130944_38	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0130944_39	UniRef90_A0A316T8M7	105.0	3.51e-28	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0130944_39	929506.CbC4_1187	52.8	0.0000000246	N/A	N/A
structural_annotation	UHGV-0130944_39	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130944_41	PF13601,TIGR04176	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130944_42	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
Pfam	UHGV-0130944_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0130944_48	phrog_7838	127.1	1.2e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130944_48	UniRef90_A0A8D9UGW3	208.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0130944_48	742767.HMPREF9456_02052	164.0	0	N/A	N/A
structural_annotation	UHGV-0130944_48	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_49	phrog_72	62.9	3.8e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130944_49	UniRef90_A0A8D9PDS2	142.0	1.36e-39	NinB protein	N/A
eggNOG-mapper	UHGV-0130944_49	445972.ANACOL_01825	155.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0130944_49	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0130944_50	K03111	129.4	4.6e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0130944_50	phrog_44	136.4	1.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130944_50	UniRef90_UPI001BB47F69	159.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0130944_50	1007096.BAGW01000007_gene1922	156.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0130944_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0130944_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0130944_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0130944_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
PHROG	UHGV-0130944_52	phrog_16304	56.2	6.8e-16	N/A	unknown function
UniRef90	UHGV-0130944_52	UniRef90_UPI001E36D421	107.0	4.46e-25	N/A	N/A
eggNOG-mapper	UHGV-0130944_52	1158610.UC3_02377	99.0	3.64e-22	Helix-turn-helix domain	N/A
Pfam	UHGV-0130944_52	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0130944_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0130944_52	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_54	phrog_244	72.9	6.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130944_54	UniRef90_A0A841R0Q1	126.0	2.19e-35	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0130944_54	1200557.JHWV01000001_gene280	107.0	2.67e-28	N/A	N/A
structural_annotation	UHGV-0130944_54	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_56	phrog_801	77.4	2.8e-22	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0130944_56	UniRef90_A0A7G6E7Z0	149.0	1.4013e-44	N/A	N/A
Pfam	UHGV-0130944_56	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0130944_56	PF18909	N/A	N/A	N/A	N/A
UniRef90	UHGV-0130944_57	UniRef90_A0A345KQM6	78.6	0.0000000000000674	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0130944_57	693746.OBV_01910	84.3	3.01e-17	N/A	N/A
eggNOG-mapper	UHGV-0130944_58	1304866.K413DRAFT_4695	72.8	3.73e-16	N/A	N/A
structural_annotation	UHGV-0130944_58	NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_59	phrog_1891	78.1	1.5e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130944_59	UniRef90_UPI001D013072	126.0	7.13e-33	HNH endonuclease	N/A
Pfam	UHGV-0130944_59	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0130944_59	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0130944_60	phrog_7713	53.5	0.000000000000003	N/A	unknown function
Pfam	UHGV-0130944_60	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
COG	UHGV-0130944_60	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130944_60	PF00805	N/A	N/A	N/A	N/A