UHGV-0131951 (vOTU-032006)

Viral Genome: UHGV-0131951

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0131951
vOTU ID	vOTU-032006
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_380340
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.01 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.68
Jumbo phage	No

Genome content
Genome length (bp)	29,319
GC content	46.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	95%
Average CDS length (bps)	632.05
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0131951_1	phrog_33061	193.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0131951_1	411468.CLOSCI_01514	243.0	0	N/A	N/A
structural_annotation	UHGV-0131951_1	PF19087	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_2	phrog_14030	224.0	0	N/A	unknown function
UniRef90	UHGV-0131951_2	UniRef90_A0A1Q6KNA3	533.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0131951_2	742741.HMPREF9475_00446	416.0	0	N/A	N/A
Pfam	UHGV-0131951_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
structural_annotation	UHGV-0131951_2	PF14627	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_3	phrog_34409	41.9	0.000000000019	N/A	unknown function
PHROG	UHGV-0131951_4	phrog_36029	210.0	0	N/A	unknown function
UniRef90	UHGV-0131951_4	UniRef90_A0A345BPS8	118.0	3.54e-32	Holin of superfamily 6	N/A
eggNOG-mapper	UHGV-0131951_4	742741.HMPREF9475_00444	184.0	0	N/A	N/A
PHROG	UHGV-0131951_5	phrog_33302	145.8	9.94922e-44	N/A	unknown function
eggNOG-mapper	UHGV-0131951_5	742741.HMPREF9475_00443	117.0	1.26e-32	N/A	N/A
PHROG	UHGV-0131951_6	phrog_1863	56.7	2.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0131951_6	742741.HMPREF9475_00442	123.0	2.88e-35	N/A	N/A
PHROG	UHGV-0131951_7	phrog_29601	119.1	1.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0131951_7	411468.CLOSCI_01508	102.0	1.55e-27	N/A	N/A
PHROG	UHGV-0131951_8	phrog_134	46.6	0.00000000000049	N/A	unknown function
UniRef90	UHGV-0131951_8	UniRef90_A0A5S4VUR2	95.1	6.69e-25	XkdX family protein	N/A
eggNOG-mapper	UHGV-0131951_8	742741.HMPREF9475_00440	81.6	2.48e-20	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0131951_8	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0131951_8	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0131951_8	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0131951_9	K00986	148.8	4.34403e-44	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0131951_9	phrog_1423	267.7	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131951_9	UniRef90_H7BVE9	823.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0131951_9	742741.HMPREF9475_00439	824.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0131951_9	drt-UG3	87.3	4e-25	DRT	DRT
Pfam	UHGV-0131951_9	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0131951_9	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0131951_9	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_11	phrog_5302	396.9	0	tail protein	tail
eggNOG-mapper	UHGV-0131951_11	411468.CLOSCI_01504	817.0	0	N/A	N/A
structural_annotation	UHGV-0131951_11	COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_12	phrog_38006	282.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0131951_12	742741.HMPREF9475_00437	246.0	0	N/A	N/A
PHROG	UHGV-0131951_13	phrog_31398	648.9	0	N/A	unknown function
UniRef90	UHGV-0131951_13	UniRef90_B0NDH4	410.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0131951_13	742741.HMPREF9475_00436	480.0	0	N/A	N/A
Pfam	UHGV-0131951_13	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0131951_13	PF10651,NF033814,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0131951_14	K01447	54.0	0.000000000000002	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0131951_14	phrog_1794	309.8	0	amidase	lysis
UniRef90	UHGV-0131951_14	UniRef90_A0A1C5UFN2	936.0	0	Exo-glucosaminidase lytG	N/A
eggNOG-mapper	UHGV-0131951_14	908340.HMPREF9406_0181	457.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0131951_14	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0131951_14	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0131951_14	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0131951_14	PF01832,PF01510,PF08230,MF_04111,NF038016,NF008758,COG1705,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_15	phrog_199	89.1	4.9e-26	holin	lysis
UniRef90	UHGV-0131951_15	UniRef90_D7GQP7	273.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0131951_15	411459.RUMOBE_01714	196.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0131951_15	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0131951_15	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0131951_15	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0131951_15	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_16	phrog_134	53.5	0.0000000000000035	N/A	unknown function
UniRef90	UHGV-0131951_16	UniRef90_A0A414B032	108.0	4.02e-30	XkdX family protein	N/A
eggNOG-mapper	UHGV-0131951_16	1298920.KI911353_gene4834	68.9	0.00000000000000238	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0131951_16	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0131951_16	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131951_17	742733.HMPREF9469_05015	72.4	0.00000000000000301	N/A	N/A
KOfam	UHGV-0131951_18	K00986	87.1	9.8e-26	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0131951_18	phrog_1423	165.4	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131951_18	UniRef90_D7GQP5	811.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0131951_18	665950.HMPREF1025_01556	366.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0131951_18	icity0040	50.8	9.4e-19	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0131951_18	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0131951_18	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0131951_18	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131951_19	1235802.C823_01101	130.0	4.67e-35	N/A	N/A
structural_annotation	UHGV-0131951_19	PF05635,NF008912	N/A	N/A	N/A	N/A
UniRef90	UHGV-0131951_20	UniRef90_A0A1C6L0B1	276.0	0	N/A	N/A
eggNOG-mapper	UHGV-0131951_20	1321782.HMPREF1986_02279	235.0	0	COG NOG18825 non supervised orthologous group	N/A
Pfam	UHGV-0131951_20	PF19789	N/A	N/A	N/A	DUF6273
PHROG	UHGV-0131951_21	phrog_25620	41.5	0.000000000015	tail collar fiber protein	tail
eggNOG-mapper	UHGV-0131951_21	1298920.KI911353_gene4837	53.1	0.0000025	N/A	N/A
PHROG	UHGV-0131951_22	phrog_18725	60.7	2.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0131951_22	1235800.C819_00473	100.0	7.43e-24	N/A	N/A
PHROG	UHGV-0131951_23	phrog_13879	289.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0131951_23	1235800.C819_00474	500.0	0	N/A	N/A
structural_annotation	UHGV-0131951_23	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_24	phrog_1194	93.2	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0131951_24	742740.HMPREF9474_03515	123.0	9.11e-35	N/A	N/A
Pfam	UHGV-0131951_24	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0131951_24	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_25	phrog_1535	141.1	2.8026e-45	tail length tape measure protein	tail
UniRef90	UHGV-0131951_25	UniRef90_A0A1C5UFA5	1227.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0131951_25	1123263.AUKY01000015_gene1620	176.0	2.92031e-42	Phage tail tape measure protein TP901	N/A
COG	UHGV-0131951_25	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0131951_26	1121333.JMLH01000047_gene1011	58.9	0.00000000293	N/A	N/A
UniRef90	UHGV-0131951_27	UniRef90_UPI0018A0054C	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0131951_27	469596.HMPREF9488_01311	99.4	1.26e-25	N/A	N/A
Pfam	UHGV-0131951_27	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0131951_27	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_28	phrog_158	52.2	0.000000000000012	major tail protein	tail
UniRef90	UHGV-0131951_28	UniRef90_D7GQN5	287.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0131951_28	1232453.BAIF02000058_gene1634	94.7	5.36e-23	N/A	N/A
Pfam	UHGV-0131951_28	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0131951_28	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0131951_29	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131951_30	476272.RUMHYD_01963	61.6	0.00000000208	N/A	N/A
eggNOG-mapper	UHGV-0131951_31	1298920.KI911353_gene2656	88.6	8.13e-21	N/A	N/A
UniRef90	UHGV-0131951_32	UniRef90_D7GQN2	198.0	0	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-0131951_32	1298920.KI911353_gene2658	60.5	0.000000000173	N/A	N/A
Pfam	UHGV-0131951_32	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0131951_32	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_33	phrog_1328	105.5	4.6e-31	major head protein	head and packaging
UniRef90	UHGV-0131951_33	UniRef90_UPI00189F9709	480.0	0	N/A	N/A
eggNOG-mapper	UHGV-0131951_33	665956.HMPREF1032_03619	189.0	0	N/A	N/A
Pfam	UHGV-0131951_33	PF17236	N/A	N/A	N/A	DUF5309
PHROG	UHGV-0131951_34	phrog_5	50.7	0.000000000000049	tail completion or Neck1 protein	connector
UniRef90	UHGV-0131951_34	UniRef90_B0NDG6	230.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0131951_34	411468.CLOSCI_01494	230.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0131951_34	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0131951_34	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_35	phrog_25	40.9	0.000000000035	head closure Hc1	connector
UniRef90	UHGV-0131951_35	UniRef90_A0A412Q2M1	215.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0131951_35	742741.HMPREF9475_00427	140.0	7.12981e-42	Phage head-tail joining protein	N/A
Pfam	UHGV-0131951_35	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0131951_35	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0131951_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0131951_36	UniRef90_A0A412Q2I2	198.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0131951_36	411468.CLOSCI_01492	114.0	2.76e-31	N/A	N/A
NCBIFam	UHGV-0131951_36	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
KOfam	UHGV-0131951_40	K18830	58.7	6.8e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0131951_40	phrog_8	48.2	0.00000000000006	transcriptional regulator	transcription regulation
UniRef90	UHGV-0131951_40	UniRef90_A0A174KPI4	244.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0131951_40	742741.HMPREF9475_00400	165.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0131951_40	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0131951_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0131951_40	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0131951_41	K23779	52.7	0.00000000000001	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0131951_41	phrog_3	44.2	0.0000000000078	transcriptional repressor	transcription regulation
UniRef90	UHGV-0131951_41	UniRef90_A0A174KVM8	129.0	6.79e-38	Conjugal transfer protein TrbA	N/A
eggNOG-mapper	UHGV-0131951_41	411468.CLOSCI_01455	117.0	3.04e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0131951_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0131951_41	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0131951_42	phrog_10934	119.7	7.2e-36	N/A	unknown function
UniRef90	UHGV-0131951_42	UniRef90_R6FYE5	191.0	0	Gp2	N/A
eggNOG-mapper	UHGV-0131951_42	1187894.I2E8X0_9CAUD	98.2	2.18e-24	N/A	N/A
KOfam	UHGV-0131951_43	K06400	279.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0131951_43	phrog_95	309.9	0	integrase	integration and excision
UniRef90	UHGV-0131951_43	UniRef90_A0A373SA36	903.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0131951_43	673832.D2IYS3_9CAUD	409.0	0	Recombinase	N/A
Pfam	UHGV-0131951_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0131951_43	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0131951_43	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
structural_annotation	UHGV-0131951_43	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0131951_44	K02003	255.3	0	ABC.CD.A; putative ABC transport system ATP-binding protein	N/A
PHROG	UHGV-0131951_44	phrog_293	147.0	1.4013e-43	ABC transporter	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0131951_44	UniRef90_A0A1C6BY23	332.0	0	Macrolide export ATP-binding/permease protein MacB	N/A
eggNOG-mapper	UHGV-0131951_44	1235798.C817_04312	220.0	0	ABC transporter	N/A
Pfam	UHGV-0131951_44	PF00005	N/A	N/A	ABC transporter	ABC_tran
COG	UHGV-0131951_44	COG1136	N/A	N/A	ABC-type lipoprotein export system, ATPase component	N/A
structural_annotation	UHGV-0131951_44	PF00005,MF_01005,NF008639,COG1136	N/A	N/A	N/A	N/A