UHGV-0132240 (vOTU-055549)

Viral Genome: UHGV-0132240

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0132240
vOTU ID	vOTU-055549
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_368720
Associated BioSample	SAMN03283275
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.11
Jumbo phage	No

Genome content
Genome length (bp)	35,033
GC content	58.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	613.21
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0132240_2	UniRef90_A0A6C2UN65	50.8	0.00000142	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0132240_2	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0132240_2	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0132240_2	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_4	phrog_6499	116.7	1.1e-34	transcriptional regulator	transcription regulation
UniRef90	UHGV-0132240_4	UniRef90_A0A3D4EJF0	129.0	2.14e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0132240_4	1415774.U728_1274	105.0	7.7e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0132240_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0132240_4	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0132240_4	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0132240_5	K22300	72.0	1.3e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0132240_5	phrog_8	59.0	1.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0132240_5	UniRef90_UPI001BB47897	70.5	0.0000000000000213	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0132240_5	693746.OBV_27490	67.8	0.0000000000000414	sequence-specific DNA binding	N/A
Pfam	UHGV-0132240_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0132240_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0132240_5	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0132240_7	K22300	67.5	3.1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0132240_7	phrog_8	76.3	5.5e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0132240_7	UniRef90_A0A845MZE2	83.6	1.03e-18	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0132240_7	1211817.CCAT010000003_gene273	69.7	0.000000000000286	transcriptional regulator	N/A
PADLOC	UHGV-0132240_7	retron_type_VI_hth_cluster2_1	44.7	0.0000000000038	N/A	Retron
Pfam	UHGV-0132240_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0132240_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0132240_8	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0132240_9	742741.HMPREF9475_00398	56.6	0.000000893	N/A	N/A
KOfam	UHGV-0132240_10	K14059	228.3	0	int; integrase	N/A
PHROG	UHGV-0132240_10	phrog_1	194.7	0	integrase	integration and excision
UniRef90	UHGV-0132240_10	UniRef90_A0A3D1VH24	304.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0132240_10	742738.HMPREF9460_04031	261.0	0	Phage integrase family	N/A
Pfam	UHGV-0132240_10	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0132240_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0132240_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0132240_10	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0132240_11	UniRef90_A0A7M1RS47	57.0	0.000000225	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0132240_11	1408437.JNJN01000043_gene801	77.0	0.00000000000000239	N/A	N/A
structural_annotation	UHGV-0132240_12	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_14	phrog_22984	46.5	0.00000000000071	N/A	unknown function
structural_annotation	UHGV-0132240_15	PF20477,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-0132240_16	UniRef90_A0A8D9PDT6	63.9	0.000000000013	Transcriptional regulatory protein	N/A
Pfam	UHGV-0132240_16	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0132240_16	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0132240_17	phrog_1129	66.6	2.9e-19	holin	lysis
UniRef90	UHGV-0132240_17	UniRef90_UPI00189DD88C	125.0	1.2e-35	phage holin family protein	N/A
eggNOG-mapper	UHGV-0132240_17	1226322.HMPREF1545_00069	126.0	5.1e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0132240_17	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0132240_17	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_18	phrog_1863	54.3	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0132240_18	1226322.HMPREF1545_04027	71.2	0.00000000000000273	N/A	N/A
PHROG	UHGV-0132240_19	phrog_14030	168.0	0	N/A	unknown function
UniRef90	UHGV-0132240_19	UniRef90_A0A173XSJ1	189.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0132240_19	1121115.AXVN01000051_gene809	182.0	0	NLP P60 protein	N/A
Pfam	UHGV-0132240_19	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0132240_19	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0132240_19	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0132240_19	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_20	phrog_27545	86.4	4e-25	N/A	unknown function
UniRef90	UHGV-0132240_20	UniRef90_R6ELD6	71.6	0.000000000000396	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0132240_20	1122971.BAME01000151_gene6566	102.0	4.7e-25	N/A	N/A
eggNOG-mapper	UHGV-0132240_23	742733.HMPREF9469_05009	64.7	0.000000000892	N/A	N/A
structural_annotation	UHGV-0132240_23	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_24	phrog_13589	166.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0132240_24	742733.HMPREF9469_05009	225.0	0	N/A	N/A
PHROG	UHGV-0132240_25	phrog_31538	40.6	0.000000000049	N/A	unknown function
structural_annotation	UHGV-0132240_26	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0132240_27	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_28	phrog_26795	114.8	4.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0132240_28	997296.PB1_16154	145.0	1.01e-37	N/A	N/A
structural_annotation	UHGV-0132240_28	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0132240_29	UniRef90_A0A3D0W045	189.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0132240_29	1195236.CTER_5103	128.0	3.8e-28	N/A	N/A
structural_annotation	UHGV-0132240_29	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_30	phrog_13338	107.0	1.8e-31	N/A	unknown function
UniRef90	UHGV-0132240_30	UniRef90_UPI00098F054B	207.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0132240_30	1195236.CTER_5104	187.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0132240_30	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0132240_30	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0132240_31	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_32	phrog_88	54.3	0.0000000000000019	major tail protein	tail
UniRef90	UHGV-0132240_32	UniRef90_A0A174CNN5	67.4	0.000000000233	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0132240_32	1195236.CTER_5106	72.8	0.000000000000341	phage major tail protein, phi13 family	N/A
COG	UHGV-0132240_32	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0132240_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0132240_33	1203606.HMPREF1526_00974	89.0	1.92e-20	N/A	N/A
structural_annotation	UHGV-0132240_33	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0132240_34	1203606.HMPREF1526_00975	81.3	2.02e-18	N/A	N/A
structural_annotation	UHGV-0132240_34	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_35	phrog_1951	81.9	5.8e-24	head-tail adaptor	connector
UniRef90	UHGV-0132240_35	UniRef90_A0A890FC27	72.4	0.0000000000000219	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0132240_35	1121428.DESHY_20140___1	67.4	0.000000000000345	head-tail adaptor	N/A
COG	UHGV-0132240_35	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0132240_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_36	phrog_5223	53.9	0.0000000000000027	neck protein	connector
UniRef90	UHGV-0132240_36	UniRef90_A8SKP1	62.0	0.000000000149	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0132240_36	411465.PEPMIC_00737	62.0	0.0000000000249	N/A	N/A
structural_annotation	UHGV-0132240_36	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_37	phrog_10	172.5	0	major head protein	head and packaging
UniRef90	UHGV-0132240_37	UniRef90_A0A3D4JZM2	357.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0132240_37	318464.IO99_13750	326.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0132240_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0132240_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0132240_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0132240_37	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0132240_38	K01358	129.6	3.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0132240_38	phrog_94	198.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0132240_38	UniRef90_U4R420	256.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0132240_38	1203606.HMPREF1526_00979	214.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0132240_38	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0132240_38	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0132240_38	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_39	phrog_12	170.9	0	portal protein	head and packaging
UniRef90	UHGV-0132240_39	UniRef90_R8W4B0	451.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-0132240_39	1203606.HMPREF1526_00980	451.0	0	Portal protein	N/A
Pfam	UHGV-0132240_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0132240_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0132240_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_40	phrog_9	402.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0132240_40	UniRef90_UPI001D07C789	795.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0132240_40	1203606.HMPREF1526_00981	759.0	0	Terminase	N/A
Pfam	UHGV-0132240_40	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0132240_40	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0132240_40	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0132240_40	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_41	phrog_1066	114.8	4.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0132240_41	1382358.JHVN01000024_gene1703	107.0	2.19e-28	N/A	N/A
structural_annotation	UHGV-0132240_41	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-0132240_42	UniRef90_R6M5E4	115.0	2.26e-31	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-0132240_42	1235793.C809_01915	120.0	1.37e-33	HNH endonuclease	N/A
COG	UHGV-0132240_42	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0132240_43	phrog_3584	124.3	1.1e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0132240_43	742738.HMPREF9460_00867	127.0	7.01e-33	N/A	N/A
structural_annotation	UHGV-0132240_43	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0132240_44	K07319	148.3	4.34403e-44	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0132240_44	phrog_67	136.3	1.90001e-40	DNA methyltransferase	other
UniRef90	UHGV-0132240_44	UniRef90_UPI00055C7461	240.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0132240_44	1444310.JANV01000096_gene3256	134.0	1.05e-33	DNA methylase	N/A
PADLOC	UHGV-0132240_44	MTase_II_00157	113.4	2.9e-34	Type II methyltransferase	RM
Pfam	UHGV-0132240_44	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0132240_44	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0132240_44	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-0132240_46	UniRef90_A0A417H740	167.0	0	N/A	N/A
Pfam	UHGV-0132240_46	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0132240_46	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0132240_49	K03497	83.1	5.4e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0132240_49	phrog_27290	332.8	0	N/A	unknown function
UniRef90	UHGV-0132240_49	UniRef90_G4L1G7	300.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0132240_49	693746.OBV_19860	300.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0132240_49	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0132240_49	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0132240_49	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0132240_50	K03496	190.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0132240_50	phrog_164	162.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0132240_50	UniRef90_A0A845R968	306.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0132240_50	742738.HMPREF9460_00854	199.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0132240_50	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0132240_50	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0132240_50	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0132240_51	K02314	235.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0132240_51	phrog_19	230.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0132240_51	UniRef90_A0A3D1V9Y4	233.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0132240_51	663278.Ethha_2283	146.0	1.81e-36	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0132240_51	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0132240_51	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0132240_51	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0132240_51	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0132240_52	phrog_270	123.9	1.8e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0132240_52	UniRef90_UPI001F3D92C2	179.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0132240_52	742738.HMPREF9460_00851	169.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0132240_52	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0132240_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0132240_52	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A