UHGV-0135158 (vOTU-018721)

Viral Genome: UHGV-0135158

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0135158
vOTU ID	vOTU-018721
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_354413
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.28 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.35
Jumbo phage	No

Genome content
Genome length (bp)	33,033
GC content	37.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	91%
Average CDS length (bps)	624.81
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0135158_1	UniRef90_A0A3D4QCC8	479.0	0	GGGtGRT protein	N/A
eggNOG-mapper	UHGV-0135158_1	511680.BUTYVIB_00397	510.0	0	GGGtGRT protein	N/A
Pfam	UHGV-0135158_1	PF14057	N/A	N/A	GGGtGRT protein	GGGtGRT
structural_annotation	UHGV-0135158_1	PF14057,NF002646,COG0246	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_2	K14059	140.0	3.59994e-41	int; integrase	N/A
PHROG	UHGV-0135158_2	phrog_1	164.7	0	integrase	integration and excision
UniRef90	UHGV-0135158_2	UniRef90_A0A7C9H3C8	542.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0135158_2	1235792.C808_01553	481.0	0	Phage integrase family	N/A
Pfam	UHGV-0135158_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0135158_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0135158_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_3	K23779	63.0	7e-18	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0135158_3	phrog_8	51.4	0.000000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0135158_3	UniRef90_A0A7C9H3W9	98.2	9e-26	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0135158_3	742741.HMPREF9475_00399	66.6	0.0000000000000524	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0135158_3	retron_type_VI_hth_cluster2_1	42.2	0.000000000028	N/A	Retron
Pfam	UHGV-0135158_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0135158_3	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_4	K22300	56.9	5.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0135158_4	phrog_4	46.9	0.00000000000069	transcriptional repressor	transcription regulation
UniRef90	UHGV-0135158_4	UniRef90_A0A350VVA1	145.0	7.53058e-42	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0135158_4	641107.CDLVIII_1309	133.0	2e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0135158_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0135158_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0135158_4	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0135158_6	PF21662,NF038384,TIGR03090	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_9	K18830	65.2	1.2e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0135158_9	phrog_8	61.9	1.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0135158_9	UniRef90_UPI000E48696E	149.0	4.76441e-44	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0135158_9	887325.HMPREF0381_0352	110.0	1.63e-29	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0135158_9	retron_type_VI_hth_cluster2_1	47.0	0.00000000000066	N/A	Retron
Pfam	UHGV-0135158_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0135158_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0135158_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_14	phrog_6058	56.0	5.6e-16	N/A	unknown function
UniRef90	UHGV-0135158_14	UniRef90_A0A3A9SV11	65.5	0.00000000000176	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0135158_14	411468.CLOSCI_01465	75.9	2.48e-17	N/A	N/A
structural_annotation	UHGV-0135158_14	PF12728,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_16	phrog_24368	44.0	0.0000000000034	N/A	unknown function
UniRef90	UHGV-0135158_17	UniRef90_A0A7C9HA55	221.0	0	N/A	N/A
Pfam	UHGV-0135158_17	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0135158_17	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_19	phrog_3584	199.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0135158_19	397290.C810_00404	382.0	0	N/A	N/A
structural_annotation	UHGV-0135158_19	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_20	phrog_824	139.3	1.40004e-41	N/A	unknown function
UniRef90	UHGV-0135158_20	UniRef90_A0A7C9H491	212.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0135158_20	397290.C810_00407	167.0	0	VRR_NUC	N/A
Pfam	UHGV-0135158_20	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0135158_20	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_21	K00558	189.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0135158_21	phrog_116	231.7	0	DNA methyltransferase	other
UniRef90	UHGV-0135158_21	UniRef90_E7GTS2	684.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0135158_21	742740.HMPREF9474_04317	684.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0135158_21	MTase_II_00020	107.1	7.1e-35	Type II methyltransferase	RM
Pfam	UHGV-0135158_21	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0135158_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0135158_21	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_22	K03496	176.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0135158_22	phrog_164	157.7	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135158_22	UniRef90_A0A7C9H418	410.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0135158_22	397288.C806_00082	265.0	0	AAA domain	N/A
Pfam	UHGV-0135158_22	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0135158_22	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0135158_22	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_23	K03497	66.4	4.6e-20	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0135158_23	phrog_15982	242.9	0	N/A	unknown function
UniRef90	UHGV-0135158_23	UniRef90_A0A7C9HAH3	572.0	0	N/A	N/A
eggNOG-mapper	UHGV-0135158_23	411470.RUMGNA_02052	463.0	0	N/A	N/A
Pfam	UHGV-0135158_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0135158_23	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0135158_23	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0135158_23	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
COG	UHGV-0135158_24	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0135158_24	PF06530,TIGR02937,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_25	phrog_1129	91.5	4.8e-27	holin	lysis
UniRef90	UHGV-0135158_25	UniRef90_UPI000485FFFD	94.4	3.92e-23	phage holin family protein	N/A
eggNOG-mapper	UHGV-0135158_25	537013.CLOSTMETH_03774	93.6	1.52e-23	N/A	N/A
Pfam	UHGV-0135158_25	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
PHROG	UHGV-0135158_26	phrog_1863	76.9	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0135158_26	665956.HMPREF1032_03922	101.0	2.99e-27	N/A	N/A
PHROG	UHGV-0135158_27	phrog_309	79.5	4.1e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0135158_27	UniRef90_A0A3D0FZE1	100.0	3.18e-24	Transposase	N/A
eggNOG-mapper	UHGV-0135158_27	1033743.CAES01000078_gene3713	75.5	0.0000000000000034	transposase activity	N/A
COG	UHGV-0135158_27	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0135158_27	PF07141	N/A	N/A	N/A	N/A
UniRef90	UHGV-0135158_28	UniRef90_A0A3B9G289	148.0	8.44e-39	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0135158_28	411473.RUMCAL_03176	62.4	0.0000000393	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0135158_28	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0135158_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0135158_28	TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_30	phrog_4581	121.4	6.5e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0135158_30	UniRef90_R5W1L1	333.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0135158_30	1123288.SOV_2c03680	185.0	0	adenylate kinase activity	N/A
Pfam	UHGV-0135158_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0135158_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0135158_30	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_31	phrog_1066	43.3	0.0000000000043	N/A	unknown function
PHROG	UHGV-0135158_32	phrog_9	253.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0135158_32	UniRef90_R7A0H4	725.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0135158_32	1211817.CCAT010000007_gene1040	483.0	0	Terminase	N/A
Pfam	UHGV-0135158_32	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0135158_32	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0135158_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0135158_32	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_33	phrog_12	151.7	4.2039e-45	portal protein	head and packaging
UniRef90	UHGV-0135158_33	UniRef90_A0A3R6X642	598.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0135158_33	1157490.EL26_20720	373.0	0	Phage portal protein	N/A
Pfam	UHGV-0135158_33	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0135158_33	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0135158_33	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_34	K06904	119.1	5.5e-35	N/A	N/A
PHROG	UHGV-0135158_34	phrog_80	148.7	5.60519e-44	head maturation protease	head and packaging
UniRef90	UHGV-0135158_34	UniRef90_R5W1K4	295.0	0	Putative phage prohead protease	N/A
eggNOG-mapper	UHGV-0135158_34	1123263.AUKY01000046_gene468	205.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0135158_34	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0135158_34	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0135158_34	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0135158_34	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_35	phrog_10	114.2	5.9e-34	major head protein	head and packaging
UniRef90	UHGV-0135158_35	UniRef90_A0A6N7SRR9	469.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0135158_35	1536774.H70357_10630	252.0	0	Phage capsid family	N/A
Pfam	UHGV-0135158_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0135158_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0135158_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0135158_35	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0135158_37	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0135158_38	UniRef90_A0A417W8T5	137.0	1.19e-39	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0135158_38	1536774.H70357_10645	55.8	0.0000000178	N/A	N/A
Pfam	UHGV-0135158_38	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0135158_38	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0135158_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0135158_39	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0135158_40	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_41	phrog_88	74.2	1.9e-21	major tail protein	tail
UniRef90	UHGV-0135158_41	UniRef90_A0A843GGC8	274.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0135158_41	394503.Ccel_2828	52.8	0.00000862	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0135158_41	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0135158_41	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0135158_41	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0135158_43	K20282	48.9	0.000000000000015	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0135158_43	phrog_1272	299.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0135158_43	UniRef90_UPI001EDCC813	493.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0135158_43	908340.HMPREF9406_2570	288.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0135158_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0135158_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0135158_43	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0135158_44	UniRef90_A0A415G8B5	142.0	3.65e-37	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0135158_44	641112.ACOK01000108_gene1808	93.6	1.39e-19	Phage tail protein	N/A
Pfam	UHGV-0135158_44	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0135158_44	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_46	phrog_36410	48.8	0.00000000000006	N/A	unknown function
eggNOG-mapper	UHGV-0135158_46	706433.HMPREF9430_01256	67.8	0.000000000862	Phage tail protein	N/A
PHROG	UHGV-0135158_47	phrog_538	284.9	0	minor tail protein	tail
UniRef90	UHGV-0135158_47	UniRef90_UPI0004813F81	296.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0135158_47	742740.HMPREF9474_02260	242.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0135158_47	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0135158_47	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0135158_48	phrog_1220	152.3	4.2039e-45	head protein	head and packaging
eggNOG-mapper	UHGV-0135158_48	1230342.CTM_17042	128.0	3.36e-34	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0135158_48	PF20747	N/A	N/A	N/A	N/A