UHGV-0135464 (vOTU-070863)

Viral Genome: UHGV-0135464

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0135464
vOTU ID	vOTU-070863
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_375783
Associated BioSample	SAMN03653686
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.76 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9739
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.03
Jumbo phage	No

Genome content
Genome length (bp)	36,256
GC content	43.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	93%
Average CDS length (bps)	579.62
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0135464_1	phrog_27136	157.0	0	N/A	unknown function
UniRef90	UHGV-0135464_1	UniRef90_UPI001CED3949	293.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0135464_1	1282664.H354_06486	144.0	6.96e-40	Short C-terminal domain	N/A
UniRef90	UHGV-0135464_2	UniRef90_UPI001BBA5CF0	95.1	1.83e-24	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0135464_2	1280698.AUJS01000007_gene1001	89.4	5.97e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0135464_2	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0135464_2	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0135464_4	K18830	55.0	0.0000000000000013	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0135464_4	phrog_8	43.5	0.0000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0135464_4	UniRef90_UPI00156DE017	164.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0135464_4	1235798.C817_05486	130.0	2.41e-37	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0135464_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0135464_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0135464_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_6	phrog_750	87.8	7.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0135464_6	742723.HMPREF9477_00931	104.0	7.21e-28	N/A	N/A
structural_annotation	UHGV-0135464_6	PF13835,NF040858	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_14	phrog_3584	157.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135464_14	UniRef90_UPI001D0EB55A	413.0	0	helitron helicase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0135464_14	483218.BACPEC_01173	179.0	0	N/A	N/A
structural_annotation	UHGV-0135464_14	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0135464_15	K03469	55.0	0.0000000000000018	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0135464_15	phrog_531	47.3	0.0000000000004	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135464_15	UniRef90_A0A173WRS0	164.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0135464_15	411459.RUMOBE_00952	156.0	0	RNase H	N/A
Pfam	UHGV-0135464_15	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0135464_15	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0135464_15	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_16	phrog_15077	120.5	0	N/A	unknown function
UniRef90	UHGV-0135464_16	UniRef90_A5ZPN2	218.0	0	N/A	N/A
eggNOG-mapper	UHGV-0135464_16	411459.RUMOBE_00949	218.0	0	N/A	N/A
COG	UHGV-0135464_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0135464_16	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_20	phrog_23707	78.7	8.9e-23	N/A	unknown function
UniRef90	UHGV-0135464_20	UniRef90_UPI00156E1A02	114.0	1.16e-31	alanine racemase	N/A
eggNOG-mapper	UHGV-0135464_20	552398.HMPREF0866_01624	62.0	0.000000000175	N/A	N/A
PHROG	UHGV-0135464_22	phrog_599	42.6	0.000000000012	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0135464_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0135464_22	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0135464_22	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_23	phrog_13561	56.0	5.2e-16	N/A	unknown function
structural_annotation	UHGV-0135464_23	PF03501	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_24	phrog_3205	182.9	0	N/A	unknown function
UniRef90	UHGV-0135464_24	UniRef90_E6EWD7	105.0	1.08e-24	EF-hand domain-containing protein	N/A
eggNOG-mapper	UHGV-0135464_24	1035196.HMPREF9998_01732	114.0	1.52e-28	N/A	N/A
PHROG	UHGV-0135464_26	phrog_15198	52.0	0.000000000000012	N/A	unknown function
UniRef90	UHGV-0135464_26	UniRef90_UPI00189FCF13	67.8	0.00000000000226	N/A	N/A
PHROG	UHGV-0135464_27	phrog_15198	60.0	4.7e-17	N/A	unknown function
UniRef90	UHGV-0135464_27	UniRef90_UPI000682E6D0	73.6	0.0000000000000044	N/A	N/A
eggNOG-mapper	UHGV-0135464_27	742723.HMPREF9477_00919	49.7	0.00000467	N/A	N/A
Pfam	UHGV-0135464_27	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0135464_31	phrog_19011	164.8	0	N/A	unknown function
structural_annotation	UHGV-0135464_31	PF18359,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_32	phrog_36	88.2	9.9e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0135464_32	UniRef90_UPI001571211B	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0135464_32	1235792.C808_03069	117.0	1.27e-31	sigma factor activity	N/A
Pfam	UHGV-0135464_32	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0135464_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0135464_32	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0135464_34	K07474	166.9	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0135464_34	phrog_51	160.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-0135464_34	UniRef90_R5QUM6	307.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0135464_34	742740.HMPREF9474_03499	263.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0135464_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0135464_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0135464_34	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0135464_35	K06909	81.6	1.2e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0135464_35	phrog_2	55.8	0.0000000000000012	terminase large subunit	head and packaging
UniRef90	UHGV-0135464_35	UniRef90_UPI001D06E172	756.0	0	terminase	N/A
eggNOG-mapper	UHGV-0135464_35	742740.HMPREF9474_03500	711.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0135464_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0135464_35	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_36	phrog_533	309.9	0	portal protein	head and packaging
UniRef90	UHGV-0135464_36	UniRef90_R5RCE0	999.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0135464_36	33035.JPJF01000093_gene2257	790.0	0	N/A	N/A
structural_annotation	UHGV-0135464_36	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_37	phrog_581	269.3	0	minor head protein	head and packaging
UniRef90	UHGV-0135464_37	UniRef90_UPI001C024B83	557.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0135464_37	33035.JPJF01000093_gene2255	498.0	0	N/A	N/A
Pfam	UHGV-0135464_37	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0135464_37	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0135464_37	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_38	phrog_2303	166.8	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0135464_38	33035.JPJF01000093_gene2253	245.0	0	N/A	N/A
PHROG	UHGV-0135464_39	phrog_422	343.0	0	major head protein	head and packaging
UniRef90	UHGV-0135464_39	UniRef90_R5RH87	586.0	0	Putative phage major capsid protein	N/A
eggNOG-mapper	UHGV-0135464_39	33035.JPJF01000093_gene2252	483.0	0	N/A	N/A
structural_annotation	UHGV-0135464_39	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_40	phrog_1378	89.8	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0135464_40	552396.HMPREF0863_01636	73.2	4.02e-16	N/A	N/A
PHROG	UHGV-0135464_41	phrog_541	81.5	9.1e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0135464_41	1298920.KI911353_gene4848	189.0	0	N/A	N/A
PHROG	UHGV-0135464_42	phrog_8710	152.5	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0135464_42	483218.BACPEC_01152	125.0	7.06e-36	N/A	N/A
structural_annotation	UHGV-0135464_42	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_43	phrog_556	60.7	2.6e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0135464_43	742740.HMPREF9474_03509	191.0	0	N/A	N/A
PHROG	UHGV-0135464_44	phrog_2595	97.1	1.5e-28	head-tail connector protein	connector
UniRef90	UHGV-0135464_44	UniRef90_UPI001C0EB705	185.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0135464_44	1123263.AUKY01000051_gene1075	100.0	2.04e-25	N/A	N/A
Pfam	UHGV-0135464_44	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0135464_44	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_45	phrog_820	124.7	4.9e-37	major tail protein	tail
eggNOG-mapper	UHGV-0135464_45	1282664.H354_06691	201.0	0	N/A	N/A
structural_annotation	UHGV-0135464_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_46	phrog_8300	103.5	1.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0135464_46	33035.JPJF01000093_gene2245	75.5	1.73e-16	N/A	N/A
structural_annotation	UHGV-0135464_46	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_47	phrog_8355	118.8	1.1e-35	N/A	unknown function
UniRef90	UHGV-0135464_47	UniRef90_A0A2Y9BGF3	178.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0135464_47	742740.HMPREF9474_03513	107.0	9.65e-29	N/A	N/A
Pfam	UHGV-0135464_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-0135464_48	phrog_1535	597.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0135464_48	UniRef90_A0A1C5RGR7	1105.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0135464_48	33035.JPJF01000093_gene2243	850.0	0	phage tail tape measure protein	N/A
COG	UHGV-0135464_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0135464_48	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_49	phrog_1194	73.6	2.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0135464_49	33035.JPJF01000093_gene2242	168.0	0	N/A	N/A
structural_annotation	UHGV-0135464_49	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_50	phrog_6616	1059.7	0	tail protein	tail
UniRef90	UHGV-0135464_50	UniRef90_R5QUN9	2400.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0135464_50	357276.EL88_12830	312.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0135464_50	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0135464_50	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0135464_50	PF05113,PF18957,PF16407,NF033848,NF011782,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_51	phrog_11105	74.5	6.7e-23	N/A	unknown function
PHROG	UHGV-0135464_52	phrog_16164	320.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0135464_52	457412.RSAG_01113	78.6	0.0000000000000122	N/A	N/A
structural_annotation	UHGV-0135464_52	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0135464_53	phrog_17147	350.5	0	N/A	unknown function
UniRef90	UHGV-0135464_53	UniRef90_A0A1M6MWL0	264.0	0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-0135464_53	478749.BRYFOR_08557	412.0	0	N/A	N/A
KOfam	UHGV-0135464_55	K00986	105.9	5.1e-31	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0135464_55	phrog_1423	182.9	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135464_55	UniRef90_A0A174K662	245.0	0	Retron-type reverse transcriptase	N/A
eggNOG-mapper	UHGV-0135464_55	478749.BRYFOR_08556	221.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0135464_55	icity0040	60.3	4e-20	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0135464_55	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0135464_55	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0135464_55	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0135464_57	1280698.AUJS01000007_gene1053	90.1	2.11e-23	N/A	N/A
PHROG	UHGV-0135464_58	phrog_937	76.6	3.1e-22	hemolysin	other
eggNOG-mapper	UHGV-0135464_58	478749.BRYFOR_07561	95.5	2.59e-24	N/A	N/A