UHGV-0135754 (vOTU-100335)

Viral Genome: UHGV-0135754

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0135754
vOTU ID	vOTU-100335
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_354650
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.27 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9721
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.69
Jumbo phage	No

Genome content
Genome length (bp)	30,882
GC content	61.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	94%
Average CDS length (bps)	579.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.27)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0135754_1	K14059	239.1	0	int; integrase	N/A
PHROG	UHGV-0135754_1	phrog_1	199.1	0	integrase	integration and excision
UniRef90	UHGV-0135754_1	UniRef90_S3XVE7	681.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0135754_1	1203568.HMPREF1484_02033	681.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0135754_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0135754_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0135754_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0135754_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0135754_1	PF00589,PF02899,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0135754_2	450380.JPSY01000001_gene405	57.0	0.0000000148	N/A	N/A
PHROG	UHGV-0135754_3	phrog_19579	62.1	9.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0135754_3	UniRef90_UPI0018679F33	75.5	0.0000000000000112	helix-turn-helix transcriptional regulator	N/A
UniRef90	UHGV-0135754_5	UniRef90_A0A5P2QZL5	70.1	0.00000000000000505	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0135754_5	710686.Mycsm_05242	50.4	0.000000152	N/A	N/A
PHROG	UHGV-0135754_7	phrog_434	152.6	2.8026e-45	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135754_7	UniRef90_S3XYU9	526.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0135754_7	1203568.HMPREF1484_02026	526.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0135754_7	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0135754_7	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0135754_7	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_8	phrog_2780	234.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135754_8	UniRef90_S3XXG0	489.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0135754_8	1203568.HMPREF1484_02025	489.0	0	RecT family	N/A
Pfam	UHGV-0135754_8	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0135754_8	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0135754_8	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
PHROG	UHGV-0135754_9	phrog_1389	51.8	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0135754_9	1203568.HMPREF1484_02024	175.0	0	N/A	N/A
PHROG	UHGV-0135754_10	phrog_826	101.3	1.1e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135754_10	UniRef90_UPI000F03BF2B	192.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0135754_10	1203568.HMPREF1484_02023	110.0	9.18e-28	HNH nucleases	N/A
Pfam	UHGV-0135754_10	PF13392	N/A	N/A	HNH endonuclease	HNH_3
COG	UHGV-0135754_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0135754_11	K03111	150.5	1.96182e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0135754_11	phrog_44	155.7	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135754_11	UniRef90_A0A5P2QZZ4	283.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0135754_11	1203568.HMPREF1484_02022	218.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0135754_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0135754_11	NF005851.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0135754_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0135754_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0135754_11	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0135754_12	285514.JNWO01000030_gene1104	51.6	0.00000533	N/A	N/A
structural_annotation	UHGV-0135754_12	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_13	phrog_2447	89.6	5.2e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0135754_13	1203568.HMPREF1484_02020	309.0	0	N/A	N/A
structural_annotation	UHGV-0135754_13	PF09681,TIGR01714	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0135754_14	1203568.HMPREF1484_02019	340.0	0	N/A	N/A
eggNOG-mapper	UHGV-0135754_23	349520.PPE_03041	65.9	0.00000000000743	N/A	N/A
PHROG	UHGV-0135754_25	phrog_13452	40.5	0.000000000039	N/A	unknown function
KOfam	UHGV-0135754_30	K00571	110.5	1.1e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0135754_30	phrog_498	356.2	0	DNA methyltransferase	other
UniRef90	UHGV-0135754_30	UniRef90_A0A5P2R012	822.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0135754_30	1203568.HMPREF1484_01995	465.0	0	DNA methylase	N/A
PADLOC	UHGV-0135754_30	MTase_II_00015	327.1	0	Type II methyltransferase	RM
Pfam	UHGV-0135754_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0135754_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0135754_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0135754_30	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_31	phrog_597	73.4	4.5e-21	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0135754_31	UniRef90_A0A6G7XD45	88.2	1.12e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0135754_31	1203568.HMPREF1484_01994	146.0	1.4013e-45	Transcriptional regulator	N/A
COG	UHGV-0135754_31	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0135754_31	PF05930,NF033499,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0135754_34	K00789	443.4	0	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	N/A
PHROG	UHGV-0135754_34	phrog_1569	409.3	0	N/A	unknown function
UniRef90	UHGV-0135754_34	UniRef90_S3XYR9	651.0	0	Methionine adenosyltransferase	N/A
eggNOG-mapper	UHGV-0135754_34	1203568.HMPREF1484_01991	651.0	0	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	N/A
Pfam	UHGV-0135754_34	PF00438	N/A	N/A	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
Pfam	UHGV-0135754_34	PF02772	N/A	N/A	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
Pfam	UHGV-0135754_34	PF02773	N/A	N/A	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
NCBIFam	UHGV-0135754_34	TIGR01034.1	N/A	N/A	methionine adenosyltransferase	N/A
COG	UHGV-0135754_34	COG0192	N/A	N/A	S-adenosylmethionine synthetase	N/A
structural_annotation	UHGV-0135754_34	PF02773,PF02772,PF00438,MF_00086,TIGR01034,COG0192	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_35	phrog_3678	138.9	3.80004e-41	N/A	unknown function
eggNOG-mapper	UHGV-0135754_35	1203568.HMPREF1484_01990	367.0	0	N/A	N/A
NCBIFam	UHGV-0135754_35	NF041373.1	N/A	N/A	HGGxSTG domain-containing protein	N/A
PHROG	UHGV-0135754_36	phrog_38	398.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0135754_36	UniRef90_S3Z1S8	994.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0135754_36	1203568.HMPREF1484_01989	994.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0135754_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0135754_36	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0135754_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0135754_36	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0135754_36	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_37	phrog_10963	336.9	0	portal protein	head and packaging
UniRef90	UHGV-0135754_37	UniRef90_A0A249XNL8	348.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0135754_37	1203568.HMPREF1484_01988	965.0	0	N/A	N/A
structural_annotation	UHGV-0135754_37	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_38	phrog_241	48.9	0.000000000000056	head morphogenesis	head and packaging
UniRef90	UHGV-0135754_38	UniRef90_S3YAS6	583.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0135754_38	1203568.HMPREF1484_01987	583.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0135754_38	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0135754_38	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_39	phrog_15531	118.4	9.2e-35	head maturation protease	head and packaging
UniRef90	UHGV-0135754_39	UniRef90_A0A514DF04	61.6	0.000000377	Capsid maturation protease	N/A
eggNOG-mapper	UHGV-0135754_39	1203568.HMPREF1484_01986	555.0	0	N/A	N/A
structural_annotation	UHGV-0135754_39	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_40	phrog_122	49.3	0.000000000000082	head decoration	head and packaging
UniRef90	UHGV-0135754_40	UniRef90_UPI00135A6752	99.4	1.16e-24	N/A	N/A
eggNOG-mapper	UHGV-0135754_40	1203568.HMPREF1484_01985	213.0	0	N/A	N/A
Pfam	UHGV-0135754_40	PF09956	N/A	N/A	N/A	DUF2190
COG	UHGV-0135754_40	COG5471	N/A	N/A	Predicted phage recombinase, RecA/RadA family	N/A
structural_annotation	UHGV-0135754_40	PF09956,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_41	phrog_133	187.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0135754_41	UniRef90_S3Z1S3	610.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0135754_41	1203568.HMPREF1484_01984	610.0	0	Mu-like prophage major head subunit gpT	N/A
Pfam	UHGV-0135754_41	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
COG	UHGV-0135754_41	COG4397	N/A	N/A	Mu-like prophage major head subunit gpT	N/A
structural_annotation	UHGV-0135754_41	PF05065,MF_04119,TIGR01554,COG4397	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_43	phrog_13779	48.0	0.00000000000018	N/A	unknown function
Pfam	UHGV-0135754_43	PF19586	N/A	N/A	N/A	DUF6093
PHROG	UHGV-0135754_44	phrog_5	76.4	5.9e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-0135754_44	UniRef90_S3XYR1	214.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0135754_44	1203568.HMPREF1484_01981	214.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0135754_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0135754_44	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0135754_44	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0135754_47	1203568.HMPREF1484_01978	359.0	0	N/A	N/A
PHROG	UHGV-0135754_49	phrog_13339	584.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0135754_49	UniRef90_S3XXC4	1947.0	0	Phage tail tape measure protein, TP901 family, core region	N/A
eggNOG-mapper	UHGV-0135754_49	1203568.HMPREF1484_01975	1947.0	0	N/A	N/A
Pfam	UHGV-0135754_49	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0135754_49	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0135754_49	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0135754_49	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0135754_50	phrog_5577	73.8	2.7e-21	minor tail protein	tail
eggNOG-mapper	UHGV-0135754_50	1203568.HMPREF1484_01974	399.0	0	N/A	N/A
structural_annotation	UHGV-0135754_50	PF20753,PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A