UHGV-0137102 (vOTU-069293)

Viral Genome: UHGV-0137102

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0137102
vOTU ID	vOTU-069293
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_368729
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.63
Jumbo phage	No

Genome content
Genome length (bp)	43,572
GC content	58.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	93%
Average CDS length (bps)	700.81
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0137102_3	K22300	51.5	0.000000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0137102_3	phrog_8	40.4	0.000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0137102_3	UniRef90_A0A3A9I218	121.0	3.76e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0137102_3	97138.C820_01960	120.0	1.35e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0137102_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0137102_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0137102_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0137102_4	K14059	153.3	2.8026e-45	int; integrase	N/A
PHROG	UHGV-0137102_4	phrog_1	164.1	0	integrase	integration and excision
UniRef90	UHGV-0137102_4	UniRef90_A0A1C6JHT2	252.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0137102_4	693746.OBV_25530	217.0	0	Phage integrase family	N/A
Pfam	UHGV-0137102_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0137102_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0137102_4	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0137102_8	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0137102_8	PF00196,MF_00674,TIGR02985,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0137102_9	411470.RUMGNA_00254	78.2	4.87e-18	N/A	N/A
PHROG	UHGV-0137102_10	phrog_355	69.9	3.3e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0137102_10	UniRef90_A0A3R6TX12	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0137102_10	97138.C820_00250	132.0	2.98e-38	N/A	N/A
Pfam	UHGV-0137102_10	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0137102_10	PF14359,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0137102_12	K21471	48.5	0.00000000000018	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-0137102_12	UniRef90_K1TIU6	76.6	0.000000000000635	Protein containing SH3, type 3 domain protein	N/A
eggNOG-mapper	UHGV-0137102_12	408672.NBCG_04985	57.0	0.0000013	NlpC/P60 family	N/A
Pfam	UHGV-0137102_12	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0137102_12	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0137102_12	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0137102_12	PF00877,PF18342,NF033742,COG0791,COG3103	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0137102_14	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0137102_14	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_15	phrog_872	90.9	1.6e-26	N/A	unknown function
UniRef90	UHGV-0137102_15	UniRef90_A0A350S1T8	135.0	1.05e-39	N/A	N/A
eggNOG-mapper	UHGV-0137102_15	1226322.HMPREF1545_00781	130.0	9.97e-37	N/A	N/A
Pfam	UHGV-0137102_15	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0137102_15	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0137102_15	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-0137102_17	K24213	55.6	5.6e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0137102_17	phrog_5073	65.4	7.2e-19	tail fiber protein	tail
Pfam	UHGV-0137102_17	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0137102_18	phrog_22978	382.7	0	N/A	unknown function
UniRef90	UHGV-0137102_18	UniRef90_A0A396KH15	303.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0137102_18	1410650.JHWL01000003_gene2814	205.0	0	N/A	N/A
Pfam	UHGV-0137102_18	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0137102_19	1410650.JHWL01000003_gene2815	133.0	3.84e-32	N/A	N/A
PHROG	UHGV-0137102_21	phrog_372	124.7	7.5e-37	tail protein	tail
UniRef90	UHGV-0137102_21	UniRef90_UPI001373A0FD	208.0	0	N/A	N/A
eggNOG-mapper	UHGV-0137102_21	1235802.C823_05263	185.0	0	N/A	N/A
Pfam	UHGV-0137102_21	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0137102_21	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0137102_21	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0137102_22	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_23	phrog_511	224.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0137102_23	1410650.JHWL01000003_gene2827	308.0	0	N/A	N/A
structural_annotation	UHGV-0137102_23	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_24	phrog_12105	134.6	4.00001e-40	N/A	unknown function
eggNOG-mapper	UHGV-0137102_24	1519439.JPJG01000060_gene1891	74.3	0.00000000000000229	N/A	N/A
PHROG	UHGV-0137102_26	phrog_1357	211.9	0	major head protein	head and packaging
UniRef90	UHGV-0137102_26	UniRef90_A0A2V2CFL5	342.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0137102_26	657322.FPR_02330	210.0	0	N/A	N/A
Pfam	UHGV-0137102_26	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0137102_26	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0137102_26	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_27	phrog_13908	232.4	0	N/A	unknown function
UniRef90	UHGV-0137102_27	UniRef90_A0A174CZ20	77.4	0.00000000000362	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0137102_27	1410650.JHWL01000003_gene2831	135.0	1.47e-34	N/A	N/A
KOfam	UHGV-0137102_28	K07584	53.7	0.0000000000000041	N/A	N/A
PHROG	UHGV-0137102_28	phrog_4478	56.0	5.4e-16	peptidase	other
UniRef90	UHGV-0137102_28	UniRef90_A0A7C6L8N4	59.3	0.00000000337	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0137102_28	555088.DealDRAFT_1009	53.1	0.000000137	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0137102_28	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0137102_28	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0137102_28	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_29	phrog_156	284.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0137102_29	1410650.JHWL01000003_gene2833	509.0	0	N/A	N/A
structural_annotation	UHGV-0137102_29	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0137102_30	K06909	119.9	2.9e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0137102_30	phrog_2	123.7	2.6e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0137102_30	UniRef90_A0A810Q5R0	621.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0137102_30	1410650.JHWL01000003_gene2834	605.0	0	N/A	N/A
Pfam	UHGV-0137102_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0137102_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0137102_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_31	phrog_1206	41.4	0.000000000011	terminase small subunit	head and packaging
UniRef90	UHGV-0137102_33	UniRef90_UPI00196212E2	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-0137102_33	397291.C804_03513	346.0	0	N/A	N/A
Pfam	UHGV-0137102_33	PF12083	N/A	N/A	N/A	DUF3560
structural_annotation	UHGV-0137102_33	PF12083,PF19881,TIGR00739,COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_36	phrog_18108	84.5	1.3e-24	N/A	unknown function
UniRef90	UHGV-0137102_36	UniRef90_UPI0018C3A07F	89.4	2.32e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0137102_36	196627.cg1967	65.5	0.000000000174	N/A	N/A
AcrCatalog	UHGV-0137102_36	cluster_73909	117.0	4.69e-35	NA	N/A
structural_annotation	UHGV-0137102_36	PF07443	N/A	N/A	N/A	N/A
UniRef90	UHGV-0137102_38	UniRef90_A0A1H4G788	112.0	1.67e-27	XPA protein C-terminus	N/A
eggNOG-mapper	UHGV-0137102_38	1121115.AXVN01000020_gene103	137.0	5.98e-38	N/A	N/A
structural_annotation	UHGV-0137102_38	PF05181	N/A	N/A	N/A	N/A
KOfam	UHGV-0137102_39	K23779	47.1	0.00000000000058	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0137102_39	phrog_5823	44.3	0.0000000000027	transcriptional regulator	transcription regulation
Pfam	UHGV-0137102_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0137102_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0137102_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_40	phrog_3584	221.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0137102_40	UniRef90_I2E8X7	125.0	6.67e-31	Gp31	N/A
eggNOG-mapper	UHGV-0137102_40	1415775.U729_1544	135.0	3.3e-35	N/A	N/A
structural_annotation	UHGV-0137102_40	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_42	phrog_824	152.8	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0137102_42	UniRef90_A0A645CPG3	154.0	1.4013e-45	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0137102_42	768710.DesyoDRAFT_5233	135.0	2.54e-39	VRR-NUC domain	N/A
Pfam	UHGV-0137102_42	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0137102_42	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0137102_45	phrog_3032	49.8	0.000000000000077	N/A	unknown function
KOfam	UHGV-0137102_49	K03111	112.6	6e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0137102_49	phrog_44	106.1	4.4e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0137102_49	UniRef90_I0I2P5	96.3	6.67e-23	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0137102_49	926550.CLDAP_14930	96.3	1.12e-23	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0137102_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0137102_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0137102_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0137102_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0137102_49	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0137102_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3