UHGV-0138070 (vOTU-082071)

Viral Genome: UHGV-0138070

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0138070
vOTU ID	vOTU-082071
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_393627
Associated BioSample	SAMN04436611
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.84
Jumbo phage	No

Genome content
Genome length (bp)	34,907
GC content	40.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	95%
Average CDS length (bps)	750.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0138070_2	phrog_87	68.1	9.6e-20	metallo-protease	other
UniRef90	UHGV-0138070_2	UniRef90_UPI001D082CAF	232.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0138070_2	1499683.CCFF01000014_gene3571	63.2	0.0000000000561	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0138070_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0138070_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0138070_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0138070_3	K22299	49.8	0.000000000000084	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0138070_3	phrog_8	59.8	6.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0138070_3	UniRef90_UPI001D06C8D0	223.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0138070_3	1304866.K413DRAFT_0833	63.9	0.0000000000042	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0138070_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0138070_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_4	phrog_8	48.4	0.00000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0138070_4	UniRef90_UPI001D085387	129.0	4.44e-38	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0138070_4	1304866.K413DRAFT_3003	56.2	0.00000000437	addiction module antidote protein HigA	N/A
Pfam	UHGV-0138070_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0138070_4	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0138070_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_5	phrog_7735	60.8	2.1e-17	excisionase	integration and excision
UniRef90	UHGV-0138070_5	UniRef90_UPI001D08DF46	129.0	5.1e-37	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0138070_5	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
COG	UHGV-0138070_5	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0138070_5	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_7	phrog_253	128.2	5.4e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138070_7	UniRef90_UPI001D06B209	283.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0138070_7	1226322.HMPREF1545_04074	92.4	1.75e-21	Siphovirus Gp157	N/A
Pfam	UHGV-0138070_7	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0138070_7	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_8	phrog_14970	286.8	0	N/A	unknown function
UniRef90	UHGV-0138070_8	UniRef90_A0A1C5NV07	220.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0138070_8	428127.EUBDOL_01248	221.0	0	double-strand break repair protein	N/A
COG	UHGV-0138070_8	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0138070_8	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_9	phrog_72	58.2	1.1e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138070_9	UniRef90_R5BGH3	129.0	1.35e-34	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0138070_9	445972.ANACOL_01825	107.0	6.97e-27	N/A	N/A
KOfam	UHGV-0138070_10	K07451	57.8	2.6e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0138070_10	phrog_7370	53.2	0.0000000000000054	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138070_10	UniRef90_UPI001D092C21	160.0	0	HNH endonuclease	N/A
Pfam	UHGV-0138070_10	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0138070_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0138070_10	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_11	phrog_1163	229.0	0	N/A	unknown function
UniRef90	UHGV-0138070_11	UniRef90_UPI001D075DB7	338.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0138070_11	1206110.L0P704_9CAUD	219.0	0	calcium ion binding	N/A
Pfam	UHGV-0138070_11	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0138070_11	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0138070_11	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_12	phrog_9804	64.4	1.7e-18	N/A	unknown function
UniRef90	UHGV-0138070_12	UniRef90_A0A1C5TFI8	57.0	0.0000016	Inhibitor_G39P domain-containing protein	N/A
structural_annotation	UHGV-0138070_12	PF11417	N/A	N/A	N/A	N/A
Pfam	UHGV-0138070_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0138070_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0138070_13	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0138070_14	K03111	142.9	3.39955e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0138070_14	phrog_44	120.6	1.4e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138070_14	UniRef90_UPI001D089952	220.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0138070_14	936589.HMPREF1521_1228	182.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0138070_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0138070_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0138070_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0138070_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0138070_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_15	phrog_774	63.7	3.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0138070_15	1042156.CXIVA_01820	57.0	0.00000000114	N/A	N/A
PHROG	UHGV-0138070_16	phrog_2882	300.1	0	DNA methyltransferase	other
UniRef90	UHGV-0138070_16	UniRef90_UPI000E75FDEB	484.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0138070_16	565653.EGBG_01954	278.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0138070_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0138070_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0138070_16	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_17	phrog_918	92.6	2.5e-27	N/A	unknown function
UniRef90	UHGV-0138070_17	UniRef90_UPI001CACBF45	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0138070_17	1401067.HMPREF0872_03440	110.0	1.48e-30	N/A	N/A
Pfam	UHGV-0138070_17	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0138070_17	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0138070_18	K01160	41.1	0.000000000044	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0138070_18	phrog_34	45.5	0.0000000000014	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138070_18	UniRef90_UPI001D065A38	195.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0138070_18	1273103.NM10_01114	94.0	8.49e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0138070_18	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0138070_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-0138070_19	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-0138070_19	PF02796,TIGR04381,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0138070_20	K19232	103.1	6.8e-31	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-0138070_20	UniRef90_UPI001D068F5F	221.0	0	YadA-like family protein	N/A
eggNOG-mapper	UHGV-0138070_20	1128111.HMPREF0870_01786	182.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-0138070_20	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
Pfam	UHGV-0138070_20	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-0138070_20	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-0138070_20	PF03895,NF033478,COG5295	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_22	phrog_36	42.4	0.000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0138070_22	UniRef90_D1YMC4	95.1	5.74e-22	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-0138070_22	706434.HMPREF9429_00383	55.8	0.000000101	N/A	N/A
structural_annotation	UHGV-0138070_22	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_26	phrog_309	121.8	2.6e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0138070_26	UniRef90_UPI001B3C9B19	131.0	4.49e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0138070_26	1416334.X2CXN2_9CAUD	115.0	3.23e-31	endonuclease activity	N/A
KOfam	UHGV-0138070_27	K06909	130.2	2.1e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0138070_27	phrog_2	116.6	3.3e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0138070_27	UniRef90_UPI001D073785	811.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0138070_27	401526.TcarDRAFT_1283	316.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0138070_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0138070_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0138070_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_29	phrog_156	345.3	0	portal protein	head and packaging
UniRef90	UHGV-0138070_29	UniRef90_F7NK66	373.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0138070_29	401526.TcarDRAFT_1284	393.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0138070_29	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0138070_29	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_31	phrog_334	206.3	0	major head protein	head and packaging
UniRef90	UHGV-0138070_31	UniRef90_UPI001D06C453	610.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0138070_31	401526.TcarDRAFT_1286	246.0	0	N/A	N/A
Pfam	UHGV-0138070_31	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0138070_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0138070_31	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138070_32	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138070_33	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0138070_34	1485543.JMME01000005_gene872	349.0	0	N/A	N/A
structural_annotation	UHGV-0138070_34	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_35	phrog_5717	88.2	3.1e-26	tail protein	tail
UniRef90	UHGV-0138070_35	UniRef90_UPI0018C60E32	106.0	1.13e-21	tail fiber protein	N/A
eggNOG-mapper	UHGV-0138070_35	1054968.G0X4V0_9CAUD	87.0	3.04e-16	N-acetylmuramoyl-L-alanine amidase activity	N/A
structural_annotation	UHGV-0138070_35	PF20747	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138070_36	PF11039,MF_00084,NF000482,COG3818	N/A	N/A	N/A	N/A
UniRef90	UHGV-0138070_37	UniRef90_UPI001D07B8A4	820.0	0	Hint domain-containing protein	N/A
eggNOG-mapper	UHGV-0138070_37	1485543.JMME01000020_gene776	121.0	4.04e-27	N/A	N/A
Pfam	UHGV-0138070_37	PF13403	N/A	N/A	Hint domain	Hint_2
structural_annotation	UHGV-0138070_37	PF07591,NF038136,TIGR03017,COG4942	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_39	phrog_9854	551.5	0	N/A	unknown function
UniRef90	UHGV-0138070_39	UniRef90_UPI001D087CF6	3273.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0138070_39	401526.TcarDRAFT_1293	954.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0138070_39	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0138070_39	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0138070_39	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0138070_39	PF18857,PF18013	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_40	phrog_199	41.0	0.000000000016	holin	lysis
UniRef90	UHGV-0138070_40	UniRef90_UPI001D062352	337.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0138070_40	883156.HMPREF9282_00970	220.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0138070_40	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0138070_40	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0138070_41	K07273	155.0	0	acm; lysozyme	N/A
PHROG	UHGV-0138070_41	phrog_6745	125.0	6.9e-37	endolysin	lysis
UniRef90	UHGV-0138070_41	UniRef90_UPI001D0872FD	412.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0138070_41	910314.HMPREF9220_0603	270.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0138070_41	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0138070_41	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0138070_41	PF01183,NF008377,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0138070_42	phrog_10797	193.9	0	N/A	unknown function
UniRef90	UHGV-0138070_42	UniRef90_A0A1B1I041	115.0	1.52e-28	Glycoprotease	N/A
eggNOG-mapper	UHGV-0138070_42	883156.HMPREF9282_01266	151.0	7.00649e-44	N/A	N/A
structural_annotation	UHGV-0138070_42	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-0138070_44	K02343	549.0	0	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	N/A
PHROG	UHGV-0138070_44	phrog_5846	270.8	0	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138070_44	UniRef90_A0A6N2YHY6	1332.0	0	DNA polymerase III subunit gamma/tau	N/A
eggNOG-mapper	UHGV-0138070_44	866776.HMPREF9321_1582	1422.0	0	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
Pfam	UHGV-0138070_44	PF13177	N/A	N/A	DNA polymerase III, delta subunit	DNA_pol3_delta2
Pfam	UHGV-0138070_44	PF12169	N/A	N/A	DNA polymerase III subunits gamma and tau domain III	DNA_pol3_gamma3
NCBIFam	UHGV-0138070_44	NF004046.0	N/A	N/A	DNA polymerase III subunit gamma/tau	N/A
COG	UHGV-0138070_44	COG2812	N/A	N/A	DNA polymerase III, gamma/tau subunits	N/A