UHGV-0138539 (vOTU-124028)

Viral Genome: UHGV-0138539

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0138539
vOTU ID	vOTU-124028
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_359764
Associated BioSample	SAMN02675517
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.59 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.34
Jumbo phage	No

Genome content
Genome length (bp)	38,861
GC content	47.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	87%
Average CDS length (bps)	628.83
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0138539_1	UniRef90_A0A154BV14	143.0	5.26888e-43	RNAase	N/A
eggNOG-mapper	UHGV-0138539_1	679200.HMPREF9333_02252	152.0	0	N/A	N/A
KOfam	UHGV-0138539_3	K14059	91.9	1.2e-26	int; integrase	N/A
PHROG	UHGV-0138539_3	phrog_1	112.4	5.3e-33	integrase	integration and excision
UniRef90	UHGV-0138539_3	UniRef90_UPI00118331F9	778.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0138539_3	478749.BRYFOR_05407	559.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0138539_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0138539_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0138539_3	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_4	phrog_13333	58.1	1.4e-16	N/A	unknown function
UniRef90	UHGV-0138539_4	UniRef90_UPI001D073EE1	980.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0138539_4	742740.HMPREF9474_04329	309.0	0	N/A	N/A
Pfam	UHGV-0138539_4	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-0138539_5	phrog_87	73.4	2.6e-21	metallo-protease	other
UniRef90	UHGV-0138539_5	UniRef90_A0A3R6TM71	164.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0138539_5	1347392.CCEZ01000005_gene1204	145.0	1.80067e-42	Zn peptidase	N/A
COG	UHGV-0138539_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0138539_5	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0138539_6	UniRef90_A0A3E4GMD4	142.0	3.67e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0138539_6	1235798.C817_04757	86.7	6.36e-20	N/A	N/A
Pfam	UHGV-0138539_6	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0138539_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0138539_6	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0138539_7	UniRef90_UPI001D096ABA	88.2	2.49e-21	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0138539_7	97139.C824_00059	92.0	8.53e-24	N/A	N/A
structural_annotation	UHGV-0138539_7	PF13443,NF010465,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138539_9	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_13	phrog_434	176.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138539_13	UniRef90_E7GRE1	450.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0138539_13	742740.HMPREF9474_03486	450.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0138539_13	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0138539_13	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0138539_13	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0138539_13	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_14	phrog_674	159.0	0	N/A	unknown function
UniRef90	UHGV-0138539_14	UniRef90_UPI000BE4798F	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-0138539_14	742740.HMPREF9474_03487	508.0	0	N/A	N/A
Pfam	UHGV-0138539_14	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0138539_14	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0138539_15	K07455	203.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0138539_15	phrog_148	221.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138539_15	UniRef90_A0A413W4Q6	455.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0138539_15	742740.HMPREF9474_03488	553.0	0	RecT family	N/A
Pfam	UHGV-0138539_15	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0138539_15	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0138539_15	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0138539_15	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_16	phrog_997	87.3	1.8e-25	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138539_16	UniRef90_A0A417AC21	157.0	0	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0138539_16	537007.BLAHAN_04219	75.1	0.0000000000000104	N/A	N/A
PHROG	UHGV-0138539_17	phrog_1029	267.0	0	N/A	unknown function
UniRef90	UHGV-0138539_17	UniRef90_E7GRE5	446.0	0	N/A	N/A
eggNOG-mapper	UHGV-0138539_17	742740.HMPREF9474_03490	446.0	0	N/A	N/A
structural_annotation	UHGV-0138539_17	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_18	phrog_244	78.8	8.9e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0138539_18	742740.HMPREF9474_03491	219.0	0	N/A	N/A
structural_annotation	UHGV-0138539_18	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0138539_19	K02315	120.6	1.7e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0138539_19	phrog_50	115.1	7.7e-34	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138539_19	UniRef90_A0A1C6HJL9	527.0	0	Primosomal protein DnaI	N/A
eggNOG-mapper	UHGV-0138539_19	742740.HMPREF9474_03493	502.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0138539_19	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0138539_19	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0138539_19	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_20	phrog_15077	200.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0138539_20	742740.HMPREF9474_03494	523.0	0	N/A	N/A
PHROG	UHGV-0138539_21	phrog_9820	41.6	0.000000000016	N/A	unknown function
UniRef90	UHGV-0138539_21	UniRef90_A0A1B8VX28	70.1	0.000000000000459	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0138539_21	97139.C824_00748	153.0	0	N/A	N/A
structural_annotation	UHGV-0138539_21	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_22	phrog_1384	90.1	2.8e-26	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0138539_22	665956.HMPREF1032_03086	153.0	0	COG NOG12663 non supervised orthologous group	N/A
AcrCatalog	UHGV-0138539_24	cluster_47354	98.2	3.39e-30	NA	N/A
PHROG	UHGV-0138539_25	phrog_36	77.5	2e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0138539_25	UniRef90_UPI001D089637	262.0	0	N/A	N/A
eggNOG-mapper	UHGV-0138539_25	1304866.K413DRAFT_3028	189.0	0	N/A	N/A
structural_annotation	UHGV-0138539_25	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0138539_27	K06909	446.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0138539_27	phrog_2606	337.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0138539_27	UniRef90_UPI0011DD9E59	1118.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0138539_27	411461.DORFOR_01162	996.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0138539_27	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0138539_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0138539_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0138539_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0138539_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0138539_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0138539_27	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_28	phrog_533	351.7	0	portal protein	head and packaging
UniRef90	UHGV-0138539_28	UniRef90_UPI00189EF0B6	866.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0138539_28	411461.DORFOR_01163	511.0	0	N/A	N/A
structural_annotation	UHGV-0138539_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_29	phrog_581	305.3	0	minor head protein	head and packaging
UniRef90	UHGV-0138539_29	UniRef90_UPI001D06AB58	750.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0138539_29	411902.CLOBOL_00137	616.0	0	N/A	N/A
Pfam	UHGV-0138539_29	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0138539_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138539_29	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_30	phrog_1233	94.0	1.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0138539_30	1151292.QEW_4538	108.0	4.36e-29	N/A	N/A
PHROG	UHGV-0138539_32	phrog_194	114.1	1.4e-33	head scaffolding protein	head and packaging
UniRef90	UHGV-0138539_32	UniRef90_UPI00189E528D	294.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0138539_32	693746.OBV_18080	108.0	4.41e-27	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0138539_32	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0138539_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_33	phrog_247	276.6	0	major head protein	head and packaging
UniRef90	UHGV-0138539_33	UniRef90_D3ANA7	684.0	0	Putative coat protein	N/A
eggNOG-mapper	UHGV-0138539_33	1304866.K413DRAFT_3038	557.0	0	N/A	N/A
structural_annotation	UHGV-0138539_33	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_34	phrog_541	100.8	1e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0138539_34	411902.CLOBOL_00133	177.0	0	N/A	N/A
PHROG	UHGV-0138539_35	phrog_3366	79.7	3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0138539_35	411902.CLOBOL_00132	191.0	0	N/A	N/A
Pfam	UHGV-0138539_35	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0138539_35	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_36	phrog_556	77.8	5.4e-23	minor head protein	head and packaging
UniRef90	UHGV-0138539_36	UniRef90_UPI00189CE0C6	282.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0138539_36	411902.CLOBOL_00131	236.0	0	Minor capsid protein	N/A
Pfam	UHGV-0138539_36	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0138539_36	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_37	phrog_3266	126.7	1.1e-37	tail completion	connector
eggNOG-mapper	UHGV-0138539_37	411902.CLOBOL_00130	211.0	0	N/A	N/A
structural_annotation	UHGV-0138539_37	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_38	phrog_3099	168.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0138539_38	411902.CLOBOL_00129	277.0	0	N/A	N/A
structural_annotation	UHGV-0138539_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_39	phrog_11299	118.2	5.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0138539_39	1298920.KI911353_gene2067	144.0	3.53968e-42	N/A	N/A
PHROG	UHGV-0138539_40	phrog_706	144.0	8.60397e-43	N/A	unknown function
UniRef90	UHGV-0138539_40	UniRef90_UPI00192502EA	360.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0138539_40	411902.CLOBOL_00127	270.0	0	N/A	N/A
Pfam	UHGV-0138539_40	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0138539_40	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_41	phrog_37543	782.8	0	N/A	unknown function
UniRef90	UHGV-0138539_41	UniRef90_UPI001DBC5439	308.0	0	PspA/IM30 family protein	N/A
eggNOG-mapper	UHGV-0138539_41	411902.CLOBOL_00126	187.0	1.4013e-45	N/A	N/A
COG	UHGV-0138539_41	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0138539_42	phrog_1194	54.5	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0138539_42	1120998.AUFC01000030_gene2246	99.4	1.02e-23	N/A	N/A
structural_annotation	UHGV-0138539_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_43	phrog_32744	153.0	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0138539_43	411902.CLOBOL_00124	456.0	0	N/A	N/A
structural_annotation	UHGV-0138539_43	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_44	phrog_18725	52.8	0.0000000000000075	N/A	unknown function
eggNOG-mapper	UHGV-0138539_44	411902.CLOBOL_00123	123.0	4.84e-34	N/A	N/A
eggNOG-mapper	UHGV-0138539_45	411902.CLOBOL_00122	115.0	2.41e-30	N/A	N/A
COG	UHGV-0138539_47	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0138539_47	PF07675,NF038128	N/A	N/A	N/A	N/A
UniRef90	UHGV-0138539_48	UniRef90_UPI0018A018CD	333.0	0	pyocin knob domain-containing protein	N/A
KOfam	UHGV-0138539_49	K03733	213.9	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0138539_49	phrog_1	148.1	8.40779e-44	integrase	integration and excision
UniRef90	UHGV-0138539_49	UniRef90_UPI001D07DDD1	670.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0138539_49	610130.Closa_3343	361.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0138539_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0138539_49	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0138539_49	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0138539_50	742740.HMPREF9474_04291	208.0	0	N/A	N/A
NCBIFam	UHGV-0138539_51	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0138539_51	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0138539_52	phrog_1863	78.9	8.5e-24	N/A	unknown function
UniRef90	UHGV-0138539_52	UniRef90_UPI001F223E8B	123.0	6.37e-35	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0138539_52	1226322.HMPREF1545_04027	78.2	6.78e-18	N/A	N/A
PHROG	UHGV-0138539_53	phrog_1129	72.8	3.3e-21	holin	lysis
UniRef90	UHGV-0138539_53	UniRef90_A0A2N0KEV2	157.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0138539_53	742740.HMPREF9474_03522	157.0	0	N/A	N/A
Pfam	UHGV-0138539_53	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0138539_53	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0138539_54	K17733	151.2	7.00649e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0138539_54	phrog_2649	142.5	3.89981e-42	endolysin	lysis
UniRef90	UHGV-0138539_54	UniRef90_A0A174GZ78	409.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
eggNOG-mapper	UHGV-0138539_54	411902.CLOBOL_06235	244.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
AcrCatalog	UHGV-0138539_54	cluster_9940	56.6	0.00000000000318	NA	N/A
Pfam	UHGV-0138539_54	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0138539_54	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0138539_54	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A