UHGV-0139510 (vOTU-157861)

Viral Genome: UHGV-0139510

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0139510
vOTU ID	vOTU-157861
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_351173
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9766
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.31
Jumbo phage	No

Genome content
Genome length (bp)	23,774
GC content	44.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	94%
Average CDS length (bps)	654.35
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0139510_1	phrog_19280	209.5	0	N/A	unknown function
UniRef90	UHGV-0139510_1	UniRef90_A0A3A9CCX0	97.8	6.4e-22	N/A	N/A
eggNOG-mapper	UHGV-0139510_1	1160721.RBI_I01572	114.0	2.69e-29	N/A	N/A
Pfam	UHGV-0139510_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0139510_1	PF10651,NF033814,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_3	phrog_1067	457.0	0	minor head protein	head and packaging
UniRef90	UHGV-0139510_3	UniRef90_UPI00164C5623	741.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0139510_3	1160721.RBI_I01574	627.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0139510_3	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0139510_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0139510_3	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0139510_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0139510_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0139510_3	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_4	phrog_33	106.7	3e-31	distal tail protein Dit	tail
UniRef90	UHGV-0139510_4	UniRef90_UPI00164BA811	370.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0139510_4	1160721.RBI_I01575	289.0	0	Phage tail protein	N/A
Pfam	UHGV-0139510_4	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0139510_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0139510_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_5	phrog_991	143.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0139510_5	UniRef90_R6GII4	482.0	0	Immunity-specific protein Beta241	N/A
eggNOG-mapper	UHGV-0139510_5	1160721.RBI_I01576	283.0	0	tail tape measure protein, TP901	N/A
COG	UHGV-0139510_5	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0139510_8	phrog_885	110.7	1.3e-32	major tail protein	tail
UniRef90	UHGV-0139510_8	UniRef90_A0A7C6X6S5	157.0	3.22299e-44	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0139510_8	1160721.RBI_I01578	243.0	0	N/A	N/A
structural_annotation	UHGV-0139510_8	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_9	phrog_957	56.2	5.5e-16	head protein	head and packaging
structural_annotation	UHGV-0139510_9	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_10	phrog_1951	110.6	6.8e-33	head-tail adaptor	connector
UniRef90	UHGV-0139510_10	UniRef90_UPI00164AE9A9	209.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0139510_10	1160721.RBI_I01580	144.0	1.77965e-43	head-tail adaptor	N/A
NCBIFam	UHGV-0139510_10	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0139510_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0139510_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_11	phrog_5223	121.3	2.3e-36	neck protein	connector
UniRef90	UHGV-0139510_11	UniRef90_UPI00164CC5D8	177.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0139510_11	1160721.RBI_I01581	119.0	1.22e-33	N/A	N/A
NCBIFam	UHGV-0139510_11	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0139510_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_12	phrog_10	123.4	2.5e-36	major head protein	head and packaging
UniRef90	UHGV-0139510_12	UniRef90_A0A356CXS9	428.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0139510_12	1160721.RBI_I01582	428.0	0	Phage capsid family	N/A
Pfam	UHGV-0139510_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0139510_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0139510_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0139510_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0139510_13	K06904	104.1	1.8e-30	N/A	N/A
PHROG	UHGV-0139510_13	phrog_80	125.2	7.2e-37	head maturation protease	head and packaging
UniRef90	UHGV-0139510_13	UniRef90_UPI00189C5536	269.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0139510_13	1160721.RBI_I01583	238.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0139510_13	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0139510_13	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0139510_13	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0139510_13	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_14	phrog_12	149.5	1.82169e-44	portal protein	head and packaging
UniRef90	UHGV-0139510_14	UniRef90_W0U6Y2	630.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0139510_14	1160721.RBI_I01584	630.0	0	Phage portal protein	N/A
Pfam	UHGV-0139510_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0139510_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0139510_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_15	phrog_9	400.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0139510_15	UniRef90_R6GIJ2	1028.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0139510_15	1160721.RBI_I01585	861.0	0	large subunit	N/A
Pfam	UHGV-0139510_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0139510_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0139510_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0139510_15	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_16	phrog_1066	108.7	3.4e-32	N/A	unknown function
UniRef90	UHGV-0139510_16	UniRef90_W0U724	126.0	2.91e-35	Phage terminase-like protein, small subunit	N/A
eggNOG-mapper	UHGV-0139510_16	1160721.RBI_I01586	126.0	4.89e-36	N/A	N/A
Pfam	UHGV-0139510_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0139510_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0139510_17	PF11305,MF_01360,NF010236	N/A	N/A	N/A	N/A
KOfam	UHGV-0139510_18	K07451	43.3	0.000000000007	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0139510_18	phrog_119	73.8	2.5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0139510_18	UniRef90_UPI00164BCC03	190.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0139510_18	1094508.Tsac_2429	119.0	1.21e-33	HNH nucleases	N/A
Pfam	UHGV-0139510_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0139510_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0139510_19	phrog_36	61.6	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0139510_19	UniRef90_UPI00164ADA1B	199.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0139510_19	484770.UFO1_1680	66.6	0.00000000000725	N/A	N/A
Pfam	UHGV-0139510_19	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0139510_19	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_21	phrog_3584	294.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0139510_21	1160721.RBI_I01590	241.0	0	N/A	N/A
structural_annotation	UHGV-0139510_21	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_22	phrog_3136	100.6	1.1e-29	N/A	unknown function
UniRef90	UHGV-0139510_22	UniRef90_A0A316BXT6	79.3	2.66e-16	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0139510_22	457405.FSDG_00736	50.4	0.00000636	rRNA binding	N/A
COG	UHGV-0139510_22	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0139510_22	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0139510_23	K08309	52.8	0.000000000000007	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0139510_23	phrog_19349	241.8	0	N/A	unknown function
UniRef90	UHGV-0139510_23	UniRef90_UPI00164BCB1C	241.0	0	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0139510_23	742740.HMPREF9474_02375	170.0	0	lytic transglycosylase activity	N/A
Pfam	UHGV-0139510_23	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0139510_23	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0139510_23	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_24	phrog_24518	201.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0139510_24	1519439.JPJG01000077_gene922	149.0	1.24015e-42	N/A	N/A
PHROG	UHGV-0139510_25	phrog_22040	70.7	1.5e-20	N/A	unknown function
structural_annotation	UHGV-0139510_25	PF07073,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_29	phrog_9958	195.3	0	N/A	unknown function
UniRef90	UHGV-0139510_29	UniRef90_R6GLI1	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139510_29	246199.CUS_4486	152.0	8.14014e-42	N/A	N/A
Pfam	UHGV-0139510_29	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0139510_29	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0139510_30	PF13613	N/A	N/A	N/A	N/A
PHROG	UHGV-0139510_32	phrog_424	75.4	3.7e-22	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0139510_32	693746.OBV_43240	554.0	0	N/A	N/A
COG	UHGV-0139510_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0139510_32	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0139510_33	K07482	51.0	0.000000000000023	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0139510_33	phrog_11420	122.1	1.4e-36	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0139510_33	UniRef90_UPI00164AA34C	149.0	1.4013e-45	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0139510_33	411483.FAEPRAA2165_01868	89.0	5.34e-22	Helix-turn-helix domain	N/A
Pfam	UHGV-0139510_33	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-0139510_33	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0139510_34	K07482	296.4	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0139510_34	phrog_4646	397.3	0	transposase	integration and excision
UniRef90	UHGV-0139510_34	UniRef90_R6GLE4	618.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0139510_34	411459.RUMOBE_01705	377.0	0	COG COG2826 Transposase and inactivated derivatives, IS30 family	N/A
Pfam	UHGV-0139510_34	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
Pfam	UHGV-0139510_34	PF00665	N/A	N/A	Integrase core domain	rve
NCBIFam	UHGV-0139510_34	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-0139510_34	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-0139510_34	PF13358,PF13384,NF033563,COG2826	N/A	N/A	N/A	N/A