UHGV-0140242 (vOTU-018717)

Viral Genome: UHGV-0140242

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0140242
vOTU ID	vOTU-018717
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_393006
Associated BioSample	SAMN04436833
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.49 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	85.64
Jumbo phage	No

Genome content
Genome length (bp)	31,814
GC content	36.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	92%
Average CDS length (bps)	625.21
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0140242_1	K01356	80.5	2.6e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0140242_1	phrog_4	137.9	8.19998e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-0140242_1	UniRef90_A0A7H4KVP8	351.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0140242_1	1139219.I569_01413	214.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0140242_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0140242_1	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0140242_1	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0140242_1	PF00717,PF01381,MF_00015,NF007621,NF041951,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0140242_2	UniRef90_V7ZP21	171.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0140242_2	1140001.I571_01122	130.0	1.74e-38	N/A	N/A
structural_annotation	UHGV-0140242_2	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_3	phrog_17173	216.9	0	N/A	unknown function
UniRef90	UHGV-0140242_3	UniRef90_V7ZTD6	185.0	0	XRE family transcriptional regulator (Fragment)	N/A
PHROG	UHGV-0140242_4	phrog_10973	67.3	1.6e-19	N/A	unknown function
PHROG	UHGV-0140242_5	phrog_7246	47.9	0.00000000000013	N/A	unknown function
PHROG	UHGV-0140242_6	phrog_373	229.5	0	anti-repressor	transcription regulation
UniRef90	UHGV-0140242_6	UniRef90_D2IYT0	431.0	0	Anti-repressor protein	N/A
eggNOG-mapper	UHGV-0140242_6	673832.D2IYT0_9CAUD	431.0	0	DNA binding	N/A
Pfam	UHGV-0140242_6	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0140242_6	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0140242_6	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0140242_6	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_7	phrog_1655	116.6	5.9e-35	N/A	unknown function
eggNOG-mapper	UHGV-0140242_7	1300150.EMQU_2298	57.0	0.000000000301	N/A	N/A
PHROG	UHGV-0140242_8	phrog_1270	104.5	3.5e-31	N/A	unknown function
PHROG	UHGV-0140242_9	phrog_21427	78.3	5.2e-23	N/A	unknown function
PHROG	UHGV-0140242_10	phrog_4384	104.6	3.1e-31	N/A	unknown function
PHROG	UHGV-0140242_11	phrog_5100	147.5	1.96182e-44	N/A	unknown function
PHROG	UHGV-0140242_12	phrog_155	118.1	7.4e-35	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140242_12	UniRef90_E6I945	441.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0140242_12	945021.TEH_18390	131.0	4.04e-35	ERF superfamily	N/A
Pfam	UHGV-0140242_12	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0140242_12	PF04404,TIGR00607,COG5468	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_13	phrog_674	216.9	0	N/A	unknown function
UniRef90	UHGV-0140242_13	UniRef90_A0A7Z8SRV7	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-0140242_13	663241.C9E2N0_9CAUD	225.0	0	N/A	N/A
Pfam	UHGV-0140242_13	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0140242_13	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_14	phrog_398	268.4	0	N/A	unknown function
UniRef90	UHGV-0140242_14	UniRef90_UPI000330E66A	435.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0140242_14	663241.C9E2N1_9CAUD	439.0	0	Pfam:HNHc_6	N/A
Pfam	UHGV-0140242_14	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0140242_14	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_15	phrog_4880	474.3	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140242_15	UniRef90_E0HGB1	533.0	0	Phage replisome organizer N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0140242_15	663241.C9E2N2_9CAUD	535.0	0	calcium ion binding	N/A
Pfam	UHGV-0140242_15	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0140242_15	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0140242_15	PF09681,TIGR01714,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_16	phrog_10188	400.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0140242_16	1140001.I571_02092	74.3	0.00000000000000413	N/A	N/A
PHROG	UHGV-0140242_17	phrog_5677	160.7	0	N/A	unknown function
PHROG	UHGV-0140242_18	phrog_954	255.6	0	DNA methyltransferase	other
UniRef90	UHGV-0140242_18	UniRef90_D2IZ07	331.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0140242_18	673832.D2IYU6_9CAUD	331.0	0	methyltransferase activity	N/A
PADLOC	UHGV-0140242_18	MTase_II_00074	245.5	0	Type II methyltransferase	RM
Pfam	UHGV-0140242_18	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
structural_annotation	UHGV-0140242_18	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_19	phrog_6270	237.3	0	N/A	unknown function
UniRef90	UHGV-0140242_19	UniRef90_D2IYU7	218.0	0	PcfU	N/A
PHROG	UHGV-0140242_20	phrog_98	89.4	3.5e-26	N/A	unknown function
UniRef90	UHGV-0140242_20	UniRef90_C9E2N7	280.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0140242_20	663241.C9E2N7_9CAUD	280.0	0	YopX protein	N/A
Pfam	UHGV-0140242_20	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0140242_20	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0140242_20	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_21	phrog_1773	125.0	1.3e-37	6-phosphofructokinase	other
UniRef90	UHGV-0140242_21	UniRef90_A0A097BY78	106.0	2.45e-29	6-phosphofructokinase	N/A
PHROG	UHGV-0140242_22	phrog_986	125.5	1.8e-37	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140242_22	UniRef90_C9E2N9	409.0	0	Asch domain protein	N/A
eggNOG-mapper	UHGV-0140242_22	663241.C9E2N9_9CAUD	409.0	0	N/A	N/A
Pfam	UHGV-0140242_22	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0140242_22	PF12961,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_23	phrog_2776	161.0	0	N/A	unknown function
UniRef90	UHGV-0140242_23	UniRef90_K8E4E2	150.0	1.5134e-43	Lin2596 protein	N/A
eggNOG-mapper	UHGV-0140242_23	663241.C9E2P0_9CAUD	334.0	0	N/A	N/A
structural_annotation	UHGV-0140242_23	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_24	phrog_6559	123.8	3.6e-37	N/A	unknown function
PHROG	UHGV-0140242_25	phrog_1335	109.1	2.3e-32	N/A	unknown function
PHROG	UHGV-0140242_26	phrog_248	128.8	3.5e-38	transcriptional activator	transcription regulation
UniRef90	UHGV-0140242_26	UniRef90_D2IZS6	258.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0140242_26	1201292.DR75_1521	236.0	0	ArpU family	N/A
NCBIFam	UHGV-0140242_26	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-0140242_26	PF05263,MF_00674,TIGR01637,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0140242_27	K07474	107.4	2.4e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0140242_27	phrog_2606	261.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0140242_27	UniRef90_V7ZMV0	445.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0140242_27	665959.HMPREF1013_05324	183.0	0	phage terminase small subunit	N/A
Pfam	UHGV-0140242_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0140242_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0140242_27	PF06056,NF040785,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0140242_28	K06909	265.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0140242_28	phrog_3717	159.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0140242_28	UniRef90_V7ZP56	887.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0140242_28	1234679.BN424_2627	706.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0140242_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0140242_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0140242_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0140242_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0140242_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_29	phrog_533	493.3	0	portal protein	head and packaging
UniRef90	UHGV-0140242_29	UniRef90_V7ZN55	1001.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0140242_29	768486.EHR_02635	762.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0140242_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0140242_29	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0140242_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_30	phrog_581	365.7	0	minor head protein	head and packaging
UniRef90	UHGV-0140242_30	UniRef90_A0A7Z8WPA9	759.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0140242_30	1158601.I585_01158	669.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0140242_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0140242_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140242_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_31	phrog_918	133.9	3.20001e-40	N/A	unknown function
UniRef90	UHGV-0140242_31	UniRef90_UPI000FFEACEB	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0140242_31	272626.lin0103	145.0	5.32493e-44	N/A	N/A
Pfam	UHGV-0140242_31	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0140242_31	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_32	phrog_194	145.6	3.09687e-43	head scaffolding protein	head and packaging
UniRef90	UHGV-0140242_32	UniRef90_V7ZRB5	295.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0140242_32	768486.EHR_02625	209.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0140242_32	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0140242_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_33	phrog_422	255.0	0	major head protein	head and packaging
UniRef90	UHGV-0140242_33	UniRef90_V7ZS76	548.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0140242_33	1158601.I585_01156	511.0	0	N/A	N/A
structural_annotation	UHGV-0140242_33	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_34	phrog_541	128.5	2.8e-38	head-tail adaptor	connector
UniRef90	UHGV-0140242_34	UniRef90_I6SVS1	172.0	0	Protein gp8	N/A
eggNOG-mapper	UHGV-0140242_34	1234679.BN424_2621	199.0	0	N/A	N/A
PHROG	UHGV-0140242_35	phrog_793	119.2	1.8e-35	head-tail adaptor	connector
UniRef90	UHGV-0140242_35	UniRef90_A0A4S2CEY0	182.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0140242_35	768486.EHR_02605	187.0	0	Minor capsid protein	N/A
Pfam	UHGV-0140242_35	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-0140242_35	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_36	phrog_556	91.4	7.7e-27	minor head protein	head and packaging
UniRef90	UHGV-0140242_36	UniRef90_V7ZQV6	214.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0140242_36	1158601.I585_01153	178.0	0	Minor capsid protein	N/A
Pfam	UHGV-0140242_36	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0140242_36	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_37	phrog_913	151.3	2.8026e-45	minor head protein	head and packaging
UniRef90	UHGV-0140242_37	UniRef90_V7ZRB1	255.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0140242_37	1158601.I585_01152	207.0	0	Minor capsid protein from bacteriophage	N/A
Pfam	UHGV-0140242_37	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0140242_37	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_38	phrog_820	185.1	0	major tail protein	tail
UniRef90	UHGV-0140242_38	UniRef90_A0A8I1FBJ6	320.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0140242_38	1158601.I585_01151	248.0	0	N/A	N/A
structural_annotation	UHGV-0140242_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_39	phrog_341	151.0	5.60519e-45	major tail protein	tail
UniRef90	UHGV-0140242_39	UniRef90_UPI000A191C1D	285.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0140242_39	1486428.A0A097BY60_9CAUD	222.0	0	peptidase activity	N/A
structural_annotation	UHGV-0140242_39	PF02368,MF_04116,TIGR04225,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_40	phrog_1061	124.7	5.3e-37	N/A	unknown function
UniRef90	UHGV-0140242_40	UniRef90_A0A380KJJ3	60.8	0.00000000447	N/A	N/A
eggNOG-mapper	UHGV-0140242_40	1158601.I585_01150	131.0	1.48e-37	N/A	N/A
structural_annotation	UHGV-0140242_40	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_41	phrog_706	180.9	0	N/A	unknown function
UniRef90	UHGV-0140242_41	UniRef90_A0A828QPX0	247.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0140242_41	1158601.I585_01149	221.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0140242_41	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0140242_41	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_42	phrog_1686	347.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0140242_42	UniRef90_A0A7Z8WRF8	1287.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0140242_42	1140003.I573_01294	302.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0140242_42	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0140242_42	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0140242_42	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0140242_42	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_43	phrog_33	76.4	6.4e-22	distal tail protein Dit	tail
UniRef90	UHGV-0140242_43	UniRef90_V7ZMX6	509.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0140242_43	1158601.I585_01147	345.0	0	phage tail	N/A
NCBIFam	UHGV-0140242_43	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0140242_43	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0140242_43	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0140242_44	phrog_1067	450.4	0	minor head protein	head and packaging
UniRef90	UHGV-0140242_44	UniRef90_UPI0010F85B65	1163.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0140242_44	1158601.I585_01146	1006.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0140242_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0140242_44	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0140242_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0140242_44	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0140242_45	phrog_1665	514.8	0	N/A	unknown function
UniRef90	UHGV-0140242_45	UniRef90_UPI001371D1DB	853.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0140242_45	673832.D2IYX9_9CAUD	216.0	0	N/A	N/A
Pfam	UHGV-0140242_45	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0140242_46	phrog_199	67.0	2.2e-19	holin	lysis
UniRef90	UHGV-0140242_46	UniRef90_A0A097BY69	263.0	0	Holin	N/A
eggNOG-mapper	UHGV-0140242_46	1486428.A0A097BY69_9CAUD	263.0	0	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-0140242_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0140242_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
KOfam	UHGV-0140242_47	K01447	46.2	0.00000000000078	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0140242_47	phrog_670	209.4	0	endolysin	lysis
UniRef90	UHGV-0140242_47	UniRef90_A0A097BY70	569.0	0	Lysin	N/A
eggNOG-mapper	UHGV-0140242_47	1486428.A0A097BY70_9CAUD	569.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0140242_47	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
structural_annotation	UHGV-0140242_47	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A