UHGV-0140780 (vOTU-087179)

Viral Genome: UHGV-0140780

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0140780
vOTU ID	vOTU-087179
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_417735
Associated BioSample	SAMN05578580
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9672
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.87
Jumbo phage	No

Genome content
Genome length (bp)	27,707
GC content	42.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	95%
Average CDS length (bps)	582.40
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0140780_1	UniRef90_R7AJG8	128.0	1.27e-37	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0140780_1	1151292.QEW_4439	53.9	0.000000008	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0140780_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0140780_1	PF13560,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0140780_2	K06223	237.3	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0140780_2	phrog_56	209.6	0	DNA methyltransferase	other
UniRef90	UHGV-0140780_2	UniRef90_A0A0X1U7T3	330.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0140780_2	97138.C820_00252	296.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0140780_2	MTase_II_00039	141.8	9.99967e-42	Type II methyltransferase	RM
Pfam	UHGV-0140780_2	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0140780_2	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-0140780_2	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0140780_2	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0140780_3	K01448	193.7	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0140780_3	phrog_435	186.2	0	endolysin	lysis
UniRef90	UHGV-0140780_3	UniRef90_R6QHB3	426.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0140780_3	97138.C820_02438	227.0	0	Ami_3	N/A
Pfam	UHGV-0140780_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0140780_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0140780_3	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_4	phrog_355	57.7	2e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140780_4	UniRef90_UPI00156F0E9C	114.0	1.42e-30	N/A	N/A
eggNOG-mapper	UHGV-0140780_4	1256908.HMPREF0373_00479	104.0	1.34e-27	N/A	N/A
Pfam	UHGV-0140780_4	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0140780_4	PF14359,COG3613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0140780_5	UniRef90_UPI001876E64F	137.0	9.13002e-41	phage holin	N/A
eggNOG-mapper	UHGV-0140780_5	1408437.JNJN01000039_gene392	85.5	4.53e-21	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0140780_5	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0140780_5	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0140780_5	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0140780_7	97138.C820_00248	55.1	0.00000000745	N/A	N/A
PHROG	UHGV-0140780_12	phrog_521	84.9	8.8e-25	tail protein	tail
UniRef90	UHGV-0140780_12	UniRef90_UPI001C107A4D	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0140780_12	1120998.AUFC01000013_gene2954	92.4	5.55e-21	N/A	N/A
Pfam	UHGV-0140780_12	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0140780_12	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140780_12	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_13	phrog_6	206.2	0	baseplate protein	tail
UniRef90	UHGV-0140780_13	UniRef90_R6PWP6	670.0	0	Baseplate J family protein	N/A
eggNOG-mapper	UHGV-0140780_13	469617.FUAG_01853	303.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0140780_13	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0140780_13	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140780_13	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_14	phrog_120	48.1	0.00000000000017	baseplate protein	tail
UniRef90	UHGV-0140780_14	UniRef90_UPI001C11145A	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-0140780_14	1120998.AUFC01000013_gene2952	67.4	0.00000000000397	N/A	N/A
Pfam	UHGV-0140780_14	PF10934	N/A	N/A	N/A	DUF2634
COG	UHGV-0140780_14	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-0140780_14	PF10934,MF_02010,NF010728,COG4381	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_16	phrog_400	191.8	0	tail protein	tail
UniRef90	UHGV-0140780_16	UniRef90_A0A162J0F6	118.0	2.71e-27	Terminase	N/A
eggNOG-mapper	UHGV-0140780_16	97138.C820_00602	148.0	3.15e-39	Late control gene D protein	N/A
COG	UHGV-0140780_16	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140780_16	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_17	phrog_5184	100.3	1.2e-29	N/A	unknown function
UniRef90	UHGV-0140780_17	UniRef90_A0A6N7XM83	135.0	2.32e-38	Phage portal protein	N/A
eggNOG-mapper	UHGV-0140780_17	1203606.HMPREF1526_01349	96.7	9.98e-24	LysM domain	N/A
COG	UHGV-0140780_17	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0140780_17	PF19266,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_18	phrog_58	87.4	1.4e-25	tail length tape measure protein	tail
UniRef90	UHGV-0140780_18	UniRef90_A0A3F2ZYT8	245.0	0	Putative prophage LambdaBa01, membrane protein	N/A
eggNOG-mapper	UHGV-0140780_18	632245.CLP_2908	247.0	0	phage tail tape measure protein	N/A
COG	UHGV-0140780_18	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0140780_18	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_19	phrog_4976	83.8	2.2e-24	tail assembly chaperone	tail
UniRef90	UHGV-0140780_19	UniRef90_UPI001875BA1A	206.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0140780_19	1095747.HMPREF1049_2003	93.2	1.57e-22	N/A	N/A
structural_annotation	UHGV-0140780_19	PF08890,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_20	phrog_365	140.9	5.09933e-42	tail protein	tail
UniRef90	UHGV-0140780_20	UniRef90_UPI001C101F78	196.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0140780_20	469617.FUAG_00843	180.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0140780_20	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0140780_20	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_21	phrog_1480	366.9	0	tail sheath	tail
UniRef90	UHGV-0140780_21	UniRef90_R6Q6F2	684.0	0	Phage_sheath_1C domain-containing protein	N/A
eggNOG-mapper	UHGV-0140780_21	358681.BBR47_29220	250.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0140780_21	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0140780_21	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_22	phrog_525	57.6	2.5e-16	N/A	unknown function
Pfam	UHGV-0140780_22	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0140780_22	PF20765,TIGR01633,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0140780_23	UniRef90_UPI000983FF43	77.8	0.00000000000000118	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0140780_23	632245.CLP_2914	68.2	0.00000000000184	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0140780_23	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_24	phrog_25	60.5	3.1e-17	head closure Hc1	connector
UniRef90	UHGV-0140780_24	UniRef90_R6Q6F7	213.0	0	Phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0140780_24	293826.Amet_2417	77.8	4.06e-17	Phage head-tail adaptor	N/A
Pfam	UHGV-0140780_24	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0140780_24	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0140780_24	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0140780_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_25	phrog_40	40.4	0.000000000042	head-tail adaptor Ad1	connector
UniRef90	UHGV-0140780_25	UniRef90_A0A168E1F6	85.9	5.97e-20	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0140780_25	1285586.H131_21297	80.1	2e-18	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0140780_25	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0140780_25	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_26	phrog_10	210.0	0	major head protein	head and packaging
UniRef90	UHGV-0140780_26	UniRef90_UPI001877424D	645.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0140780_26	1196031.ALEG01000039_gene1816	290.0	0	Phage capsid family	N/A
Pfam	UHGV-0140780_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0140780_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0140780_26	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0140780_26	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0140780_27	K06904	77.5	2.5e-22	N/A	N/A
PHROG	UHGV-0140780_27	phrog_80	107.1	2.8e-31	head maturation protease	head and packaging
UniRef90	UHGV-0140780_27	UniRef90_UPI001C1087C6	215.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0140780_27	796940.HMPREF9628_00145	154.0	1.68156e-44	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0140780_27	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0140780_27	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0140780_27	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_28	phrog_12	216.5	0	portal protein	head and packaging
UniRef90	UHGV-0140780_28	UniRef90_UPI001C0FDDEA	366.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0140780_28	397288.C806_00075	246.0	0	Portal protein	N/A
Pfam	UHGV-0140780_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0140780_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0140780_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0140780_28	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_29	phrog_9	282.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0140780_29	UniRef90_R6QAA8	1080.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0140780_29	1399942.U3PBG5_9CAUD	587.0	0	Phage Terminase	N/A
Pfam	UHGV-0140780_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0140780_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0140780_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_30	phrog_83	87.0	2.4e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0140780_30	UniRef90_R6PVW0	286.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0140780_30	742738.HMPREF9460_01362	104.0	1.91e-26	phage terminase small subunit	N/A
Pfam	UHGV-0140780_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0140780_30	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0140780_30	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0140780_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0140780_31	K07451	47.1	0.0000000000004	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0140780_31	phrog_144	88.4	8e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140780_31	UniRef90_UPI00187661DA	275.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0140780_31	1414720.CBYM010000002_gene577	122.0	4.86e-34	HNH nucleases	N/A
Pfam	UHGV-0140780_31	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0140780_33	phrog_3584	172.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0140780_33	536233.CLO_3655	115.0	7.77e-28	N/A	N/A
structural_annotation	UHGV-0140780_33	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_34	phrog_23707	54.5	0.0000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0140780_34	411483.FAEPRAA2165_01889	58.5	0.00000000206	N/A	N/A
PHROG	UHGV-0140780_35	phrog_7566	68.2	1.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0140780_35	508419.F8J187_9CAUD	72.0	0.0000000000000825	N/A	N/A
PHROG	UHGV-0140780_38	phrog_15609	168.6	0	N/A	unknown function
UniRef90	UHGV-0140780_38	UniRef90_UPI001875FF23	526.0	0	N/A	N/A
eggNOG-mapper	UHGV-0140780_38	1007096.BAGW01000031_gene118	144.0	5.22e-37	N/A	N/A
Pfam	UHGV-0140780_38	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0140780_38	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0140780_38	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_39	phrog_8470	224.4	0	N/A	unknown function
UniRef90	UHGV-0140780_39	UniRef90_UPI001875A728	978.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0140780_39	1157490.EL26_01845	180.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0140780_39	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0140780_39	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0140780_40	phrog_7445	52.0	0.000000000000011	N/A	unknown function
Pfam	UHGV-0140780_40	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0140780_40	PF14058	N/A	N/A	N/A	N/A
KOfam	UHGV-0140780_44	K18830	56.3	6.8e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0140780_44	phrog_2967	48.8	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0140780_44	UniRef90_UPI00187722C8	196.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0140780_44	431943.CKL_4031	92.4	1.51e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0140780_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0140780_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0140780_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0140780_45	K02342	171.5	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0140780_45	phrog_192	158.1	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140780_45	UniRef90_A0A3R6I8H2	206.0	0	Exonuclease	N/A
eggNOG-mapper	UHGV-0140780_45	1123288.SOV_2c03960	182.0	0	DNA polymerase III	N/A
PADLOC	UHGV-0140780_45	cd06127	134.6	1.2e-39	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0140780_45	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0140780_45	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0140780_45	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A