UHGV-0140962 (vOTU-015630)

Viral Genome: UHGV-0140962

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0140962
vOTU ID	vOTU-015630
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_408482
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.34 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.969
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.09
Jumbo phage	No

Genome content
Genome length (bp)	36,671
GC content	55.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	89%
Average CDS length (bps)	606.22
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0140962_1	K14059	51.4	0.000000000000024	int; integrase	N/A
PHROG	UHGV-0140962_1	phrog_1	50.2	0.000000000000048	integrase	integration and excision
UniRef90	UHGV-0140962_1	UniRef90_UPI001D022747	331.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0140962_1	411459.RUMOBE_02159	331.0	0	Phage integrase family	N/A
Pfam	UHGV-0140962_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0140962_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0140962_2	phrog_2162	109.3	4e-32	Sir2 (NAD-dependent deacetylase)	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140962_2	UniRef90_A0A416L0I2	360.0	0	Sir2 silent information regulator family NAD-dependent deacetylase	N/A
eggNOG-mapper	UHGV-0140962_2	796942.HMPREF9623_01331	339.0	0	COG COG0846 NAD-dependent protein deacetylases, SIR2 family	N/A
COG	UHGV-0140962_2	COG0846	N/A	N/A	NAD-dependent protein deacetylase, SIR2 family	N/A
KOfam	UHGV-0140962_3	K22300	41.0	0.000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0140962_3	UniRef90_A0A6N8H383	283.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0140962_3	397288.C806_01617	115.0	1.03e-29	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0140962_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0140962_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0140962_3	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0140962_5	K07505	76.3	4.4e-22	repA; regulatory protein RepA	N/A
PHROG	UHGV-0140962_5	phrog_6357	58.2	1.3e-16	N/A	unknown function
UniRef90	UHGV-0140962_5	UniRef90_UPI0011C83B21	371.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0140962_5	411471.SUBVAR_06581	217.0	0	COG NOG19743 non supervised orthologous group	N/A
Pfam	UHGV-0140962_5	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0140962_5	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
KOfam	UHGV-0140962_6	K06223	225.7	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0140962_6	phrog_56	185.5	0	DNA methyltransferase	other
UniRef90	UHGV-0140962_6	UniRef90_UPI001C3B62EA	367.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0140962_6	411471.SUBVAR_06973	338.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0140962_6	MTase_II_00039	136.0	6e-40	Type II methyltransferase	RM
Pfam	UHGV-0140962_6	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0140962_6	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0140962_6	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_7	phrog_13256	63.3	2.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0140962_7	1226322.HMPREF1545_00132	58.5	0.00000000024	N/A	N/A
PHROG	UHGV-0140962_8	phrog_918	123.7	5.1e-37	N/A	unknown function
UniRef90	UHGV-0140962_8	UniRef90_UPI00115A7D93	128.0	5.38e-37	N/A	N/A
eggNOG-mapper	UHGV-0140962_8	469618.FVAG_01307	125.0	9.93e-37	N/A	N/A
Pfam	UHGV-0140962_8	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0140962_8	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_9	phrog_4105	72.6	5.1e-21	N/A	unknown function
UniRef90	UHGV-0140962_9	UniRef90_A0A8D9UHA9	50.8	0.00000254	Holin protein	N/A
eggNOG-mapper	UHGV-0140962_9	657322.FPR_27220	77.8	1.38e-17	N/A	N/A
PHROG	UHGV-0140962_10	phrog_355	58.8	9.8e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140962_10	UniRef90_UPI00156F0E9C	135.0	2.89e-39	N/A	N/A
eggNOG-mapper	UHGV-0140962_10	411473.RUMCAL_00360	126.0	9.11e-37	N/A	N/A
structural_annotation	UHGV-0140962_10	PF14359,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0140962_11	K07273	132.5	4.6e-39	acm; lysozyme	N/A
PHROG	UHGV-0140962_11	phrog_291	110.5	1.8e-32	endolysin	lysis
UniRef90	UHGV-0140962_11	UniRef90_A0A1Q6T343	574.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0140962_11	411471.SUBVAR_05145	259.0	0	heme binding	N/A
Pfam	UHGV-0140962_11	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0140962_11	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0140962_11	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0140962_11	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_14	phrog_19111	47.4	0.000000000000099	N/A	unknown function
COG	UHGV-0140962_14	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0140962_15	phrog_18725	48.3	0.0000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0140962_15	1120746.CCNL01000014_gene2212	102.0	2.29e-26	N/A	N/A
PHROG	UHGV-0140962_16	phrog_13879	279.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0140962_16	1120746.CCNL01000014_gene2107	315.0	0	N/A	N/A
structural_annotation	UHGV-0140962_16	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_17	phrog_1194	63.2	4.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0140962_17	1120746.CCNL01000014_gene2106	160.0	0	N/A	N/A
structural_annotation	UHGV-0140962_17	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_18	phrog_1535	231.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0140962_18	665956.HMPREF1032_03628	175.0	5.15958e-42	domain protein	N/A
COG	UHGV-0140962_18	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_19	phrog_706	108.7	5.6e-32	N/A	unknown function
UniRef90	UHGV-0140962_19	UniRef90_UPI0013141117	231.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0140962_19	665956.HMPREF1032_03058	213.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0140962_19	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0140962_19	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_20	phrog_11299	96.8	2.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0140962_20	665956.HMPREF1032_03059	117.0	1.49e-31	N/A	N/A
PHROG	UHGV-0140962_21	phrog_3099	150.6	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0140962_21	411471.SUBVAR_06936	272.0	0	N/A	N/A
structural_annotation	UHGV-0140962_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_22	phrog_3266	45.5	0.0000000000011	tail completion	connector
eggNOG-mapper	UHGV-0140962_22	693746.OBV_18140	182.0	0	N/A	N/A
structural_annotation	UHGV-0140962_22	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_23	phrog_556	40.7	0.000000000043	minor head protein	head and packaging
UniRef90	UHGV-0140962_23	UniRef90_UPI001967B4B3	154.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0140962_23	999411.HMPREF1092_03318	51.2	0.0000015	Minor capsid protein	N/A
Pfam	UHGV-0140962_23	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0140962_23	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140962_24	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_25	phrog_541	40.6	0.000000000042	head-tail adaptor	connector
eggNOG-mapper	UHGV-0140962_25	693746.OBV_18110	77.8	5.98e-17	N/A	N/A
PHROG	UHGV-0140962_27	phrog_422	213.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0140962_27	693746.OBV_18090	334.0	0	N/A	N/A
structural_annotation	UHGV-0140962_27	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_28	phrog_194	82.0	1e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0140962_28	UniRef90_A0A4R1QTK7	194.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0140962_28	411471.SUBVAR_06994	220.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0140962_28	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0140962_28	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_31	phrog_581	189.9	0	minor head protein	head and packaging
UniRef90	UHGV-0140962_31	UniRef90_UPI00196795ED	348.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0140962_31	411471.SUBVAR_06995	542.0	0	N/A	N/A
Pfam	UHGV-0140962_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0140962_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140962_31	PF06152,PF14220	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_32	phrog_533	174.0	0	portal protein	head and packaging
UniRef90	UHGV-0140962_32	UniRef90_D1PRG7	599.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0140962_32	411471.SUBVAR_06996	599.0	0	N/A	N/A
structural_annotation	UHGV-0140962_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0140962_34	K06909	375.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0140962_34	phrog_3717	149.1	2.24208e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0140962_34	UniRef90_A0A6N8H4Y1	808.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0140962_34	411471.SUBVAR_06998	719.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0140962_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0140962_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0140962_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0140962_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0140962_34	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0140962_36	K02601	53.0	0.0000000000000059	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-0140962_36	phrog_6386	88.1	9e-26	transcription antiterminator	transcription regulation
UniRef90	UHGV-0140962_36	UniRef90_A0A6N8H0F4	318.0	0	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-0140962_36	411471.SUBVAR_07000	205.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-0140962_36	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0140962_36	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0140962_36	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_37	phrog_426	95.4	7.8e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0140962_37	UniRef90_A0A6N8H2N8	367.0	0	N/A	N/A
eggNOG-mapper	UHGV-0140962_37	411471.SUBVAR_07001	320.0	0	N/A	N/A
Pfam	UHGV-0140962_37	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0140962_37	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_38	phrog_25462	97.8	8e-29	N/A	unknown function
UniRef90	UHGV-0140962_38	UniRef90_A0A6N8H1D3	180.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0140962_38	742733.HMPREF9469_02885	87.8	5.34e-21	N/A	N/A
structural_annotation	UHGV-0140962_38	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_39	phrog_462	43.0	0.0000000000000012	lipoprotein	other
eggNOG-mapper	UHGV-0140962_39	411471.SUBVAR_07003	102.0	2.81e-26	N/A	N/A
PHROG	UHGV-0140962_40	phrog_836	56.0	5.1e-16	late transcriptional activator	transcription regulation
UniRef90	UHGV-0140962_40	UniRef90_A0A6N8H2N1	197.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0140962_40	411471.SUBVAR_07004	137.0	1.15999e-40	Mor transcription activator	N/A
Pfam	UHGV-0140962_40	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0140962_40	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0140962_40	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_41	phrog_286	72.9	5.8e-21	N/A	unknown function
UniRef90	UHGV-0140962_41	UniRef90_A0A6N8H086	261.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0140962_41	411471.SUBVAR_07005	227.0	0	N/A	N/A
Pfam	UHGV-0140962_41	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0140962_41	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_43	phrog_491	99.0	4.7e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140962_43	UniRef90_A0A6N3F7T2	224.0	0	Bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-0140962_43	411471.SUBVAR_07006	224.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0140962_43	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-0140962_43	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-0140962_43	PF07352,COG4396	N/A	N/A	N/A	N/A
PHROG	UHGV-0140962_44	phrog_5671	93.4	2.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0140962_44	552398.HMPREF0866_03130	105.0	1.43e-27	N/A	N/A
KOfam	UHGV-0140962_46	K07132	117.6	1.2e-34	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0140962_46	phrog_296	151.0	9.80909e-45	DNA transposition protein	integration and excision
UniRef90	UHGV-0140962_46	UniRef90_A0A6N8H4X2	541.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0140962_46	411471.SUBVAR_07009	521.0	0	AAA domain	N/A
Pfam	UHGV-0140962_46	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0140962_46	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
PHROG	UHGV-0140962_47	phrog_310	351.6	0	transposase	integration and excision
UniRef90	UHGV-0140962_47	UniRef90_A0A6N8H399	1110.0	0	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0140962_47	411471.SUBVAR_07010	1011.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0140962_47	TnsB_0_V-K	47.0	0.00000000000031	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0140962_47	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0140962_47	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0140962_47	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140962_48	PF15582,MF_00791,NF041178,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-0140962_53	UniRef90_UPI0019671B18	82.4	2.72e-19	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0140962_53	929506.CbC4_1187	56.6	0.000000000592	N/A	N/A
structural_annotation	UHGV-0140962_53	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0140962_54	K23779	50.8	0.000000000000042	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0140962_54	phrog_3	48.0	0.00000000000056	transcriptional repressor	transcription regulation
UniRef90	UHGV-0140962_54	UniRef90_UPI001D0F3786	218.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0140962_54	411471.SUBVAR_07015	160.0	0	N/A	N/A
Pfam	UHGV-0140962_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0140962_54	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0140962_54	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A