UHGV-0140984 (vOTU-032584)

Viral Genome: UHGV-0140984

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0140984
vOTU ID	vOTU-032584
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_399137
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.94 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9731
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.06
Jumbo phage	No

Genome content
Genome length (bp)	20,698
GC content	45.56%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	98%
Average CDS length (bps)	594.53
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0140984_1	K01447	103.6	3.1e-30	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0140984_1	phrog_3088	251.1	0	amidase	lysis
UniRef90	UHGV-0140984_1	UniRef90_A0A412AXM4	373.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0140984_1	428125.CLOLEP_00171	380.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0140984_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0140984_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-0140984_2	phrog_7121	246.5	0	tail fiber protein	tail
UniRef90	UHGV-0140984_2	UniRef90_A7VT91	741.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0140984_2	428125.CLOLEP_00172	751.0	0	COG COG5295 Autotransporter adhesin	N/A
Pfam	UHGV-0140984_2	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0140984_2	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0140984_2	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_3	phrog_1067	403.7	0	minor head protein	head and packaging
UniRef90	UHGV-0140984_3	UniRef90_A0A1C6H6B4	985.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0140984_3	1123263.AUKY01000068_gene489	432.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0140984_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0140984_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0140984_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0140984_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_4	phrog_33	82.2	1.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0140984_4	UniRef90_A0A1C6H6D2	484.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0140984_4	1160721.RBI_I01575	160.0	0	Phage tail protein	N/A
COG	UHGV-0140984_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0140984_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_5	phrog_23464	265.6	0	N/A	unknown function
UniRef90	UHGV-0140984_5	UniRef90_A0A1C6H5M9	972.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0140984_5	1232452.BAIB02000007_gene1616	286.0	0	phage tail tape measure protein	N/A
COG	UHGV-0140984_5	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0140984_5	PF20155,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_6	phrog_3033	49.4	0.000000000000073	N/A	unknown function
eggNOG-mapper	UHGV-0140984_6	1280671.AUJH01000012_gene3142	52.4	0.0000000175	N/A	N/A
PHROG	UHGV-0140984_7	phrog_709	118.4	3.9e-35	N/A	unknown function
eggNOG-mapper	UHGV-0140984_7	411471.SUBVAR_05858	137.0	5.45e-40	N/A	N/A
structural_annotation	UHGV-0140984_7	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_8	phrog_88	168.6	0	major tail protein	tail
UniRef90	UHGV-0140984_8	UniRef90_A0A1C6H6F0	353.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0140984_8	1226322.HMPREF1545_00121	189.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0140984_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0140984_8	PF06488,TIGR01603,COG3157	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_9	phrog_78	46.3	0.00000000000086	tail terminator	connector
UniRef90	UHGV-0140984_9	UniRef90_U2SBX3	131.0	1.18e-37	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0140984_9	411471.SUBVAR_05856	145.0	6.44597e-44	N/A	N/A
structural_annotation	UHGV-0140984_9	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_10	phrog_5	59.3	1.2e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0140984_10	UniRef90_UPI000C7BEE97	163.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0140984_10	411471.SUBVAR_05855	145.0	2.12997e-43	N/A	N/A
Pfam	UHGV-0140984_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0140984_10	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_11	phrog_1951	93.9	1.1e-27	head-tail adaptor	connector
UniRef90	UHGV-0140984_11	UniRef90_A0A2V2GSS5	128.0	2.17e-36	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0140984_11	411471.SUBVAR_05854	85.1	2.75e-20	N/A	N/A
structural_annotation	UHGV-0140984_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_12	phrog_2550	89.8	1.5e-26	N/A	unknown function
UniRef90	UHGV-0140984_12	UniRef90_R5V091	74.3	0.00000000000000191	Phage related protein	N/A
eggNOG-mapper	UHGV-0140984_12	1226322.HMPREF1545_00117	123.0	1.09e-35	N/A	N/A
structural_annotation	UHGV-0140984_12	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_13	phrog_10	210.1	0	major head protein	head and packaging
UniRef90	UHGV-0140984_13	UniRef90_A0A1C6H720	996.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0140984_13	1226322.HMPREF1545_00116	662.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0140984_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0140984_13	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0140984_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0140984_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0140984_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0140984_14	K06904	147.8	9.94922e-44	N/A	N/A
PHROG	UHGV-0140984_14	phrog_80	171.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0140984_14	UniRef90_A0A1C6H687	401.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0140984_14	1226322.HMPREF1545_00115	251.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0140984_14	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0140984_14	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0140984_14	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0140984_14	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_15	phrog_12	176.7	0	portal protein	head and packaging
UniRef90	UHGV-0140984_15	UniRef90_A0A1C6H763	806.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0140984_15	1226322.HMPREF1545_00114	560.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0140984_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0140984_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0140984_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0140984_15	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_16	phrog_9	298.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0140984_16	UniRef90_A0A0D8IV16	1088.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0140984_16	1226322.HMPREF1545_00113	892.0	0	Phage Terminase	N/A
Pfam	UHGV-0140984_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0140984_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0140984_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0140984_16	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_17	phrog_361	70.4	3e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0140984_17	UniRef90_A0A1C6H6I9	241.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0140984_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0140984_17	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0140984_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0140984_20	K07451	50.4	0.000000000000045	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0140984_20	phrog_119	88.6	8.6e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140984_20	UniRef90_A0A2V2GQ57	130.0	1.01e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0140984_20	1226322.HMPREF1545_00111	119.0	2.22e-34	HNH nucleases	N/A
Pfam	UHGV-0140984_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0140984_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0140984_20	TIGR02646	N/A	N/A	N/A	N/A
KOfam	UHGV-0140984_23	K07339	64.1	2e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0140984_23	phrog_353	51.8	0.000000000000011	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0140984_23	UniRef90_A0A412AQ35	122.0	2.19e-35	Addiction module toxin, HicA family	N/A
eggNOG-mapper	UHGV-0140984_23	913865.DOT_1066	85.5	1.17e-21	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0140984_23	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-0140984_23	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0140984_24	K18843	48.0	0.00000000000029	hicB; antitoxin HicB	N/A
PHROG	UHGV-0140984_24	phrog_497	81.0	2.2e-23	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0140984_24	UniRef90_A0A412AQ21	243.0	0	Type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0140984_24	1195236.CTER_2094	147.0	5.04467e-44	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
COG	UHGV-0140984_24	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0140984_24	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_25	phrog_36	71.6	1.5e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0140984_25	UniRef90_A0A3D3FGT2	94.4	4.26e-22	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0140984_25	742741.HMPREF9475_02386	62.0	0.000000000256	sigma factor activity	N/A
COG	UHGV-0140984_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0140984_25	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0140984_34	phrog_924	47.6	0.00000000000031	N/A	unknown function
UniRef90	UHGV-0140984_34	UniRef90_A0A413FXK7	110.0	3.41e-29	N/A	N/A
Pfam	UHGV-0140984_34	PF04448	N/A	N/A	N/A	DUF551