UHGV-0141008 (vOTU-104861)

Viral Genome: UHGV-0141008

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0141008
vOTU ID	vOTU-104861
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_402312
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.79 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.5
Jumbo phage	No

Genome content
Genome length (bp)	31,184
GC content	43.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	94%
Average CDS length (bps)	712.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0141008_1	phrog_33061	60.4	5.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0141008_1	411468.CLOSCI_01514	73.6	0.0000000000000526	N/A	N/A
PHROG	UHGV-0141008_2	phrog_1129	76.3	2.7e-22	holin	lysis
UniRef90	UHGV-0141008_2	UniRef90_A0A416AFW1	150.0	1.4013e-45	Enolase	N/A
eggNOG-mapper	UHGV-0141008_2	411461.DORFOR_00721	105.0	1.05e-28	N/A	N/A
Pfam	UHGV-0141008_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0141008_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_3	phrog_1863	58.5	4.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0141008_3	1226322.HMPREF1545_04027	72.0	0.00000000000000141	N/A	N/A
KOfam	UHGV-0141008_4	K01447	57.7	2.7e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0141008_4	phrog_7698	152.5	4.2039e-45	endolysin	lysis
UniRef90	UHGV-0141008_4	UniRef90_A0A849CVD3	256.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0141008_4	1226322.HMPREF1545_04024	247.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0141008_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0141008_4	PF07538	N/A	N/A	Clostridial hydrophobic W	ChW
COG	UHGV-0141008_4	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0141008_4	PF05382,NF033743,COG5492,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0141008_5	K04763	179.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0141008_5	phrog_1	123.2	2.9e-36	integrase	integration and excision
UniRef90	UHGV-0141008_5	UniRef90_A0A844KCF3	153.0	1.32002e-42	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0141008_5	397291.C804_01139	153.0	2.42425e-43	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0141008_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0141008_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0141008_5	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_6	phrog_31398	120.2	1.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0141008_6	411459.RUMOBE_01721	117.0	7.97e-27	N/A	N/A
Pfam	UHGV-0141008_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0141008_8	phrog_18110	438.4	0	N/A	unknown function
UniRef90	UHGV-0141008_8	UniRef90_A0A373S6M8	494.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0141008_8	411459.RUMOBE_01723	380.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0141008_8	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0141008_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0141008_8	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0141008_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0141008_8	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0141008_9	phrog_33	46.4	0.000000000001	distal tail protein Dit	tail
UniRef90	UHGV-0141008_9	UniRef90_UPI001D05C493	221.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0141008_9	411459.RUMOBE_00925	99.8	1.13e-22	phage tail	N/A
COG	UHGV-0141008_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0141008_9	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0141008_10	K16808	47.9	0.000000000000025	NUMA1; nuclear mitotic apparatus protein 1	N/A
PHROG	UHGV-0141008_10	phrog_1272	228.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0141008_10	UniRef90_A0A350S489	662.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0141008_10	742741.HMPREF9475_00433	571.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0141008_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0141008_10	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
structural_annotation	UHGV-0141008_10	PF10145,PF05384,TIGR01760,NF006545,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_11	phrog_25901	183.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0141008_11	411468.CLOSCI_01498	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0141008_11	PF10109	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_12	phrog_13494	89.2	3.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0141008_12	411468.CLOSCI_01497	74.3	6.41e-16	N/A	N/A
structural_annotation	UHGV-0141008_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_13	phrog_88	147.5	6.72623e-44	major tail protein	tail
UniRef90	UHGV-0141008_13	UniRef90_A0A412Q217	317.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0141008_13	411468.CLOSCI_01496	309.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0141008_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0141008_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141008_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_14	phrog_78	49.2	0.000000000000098	tail terminator	connector
UniRef90	UHGV-0141008_14	UniRef90_I2E8V8	62.4	0.000000000172	Gp10	N/A
eggNOG-mapper	UHGV-0141008_14	411468.CLOSCI_01495	137.0	9.32004e-41	N/A	N/A
structural_annotation	UHGV-0141008_14	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_15	phrog_5	49.2	0.00000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0141008_15	UniRef90_B0NDG6	200.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0141008_15	411468.CLOSCI_01494	200.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0141008_15	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0141008_15	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_16	phrog_25	42.0	0.000000000017	head closure Hc1	connector
UniRef90	UHGV-0141008_16	UniRef90_A0A412Q2M1	112.0	5.72e-30	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0141008_16	742741.HMPREF9475_00427	104.0	7.42e-28	Phage head-tail joining protein	N/A
Pfam	UHGV-0141008_16	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0141008_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0141008_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141008_17	UniRef90_A0A412Q2I2	116.0	7.82e-32	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0141008_17	411468.CLOSCI_01492	100.0	3.31e-26	N/A	N/A
NCBIFam	UHGV-0141008_17	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0141008_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_18	phrog_10	228.5	0	major head protein	head and packaging
UniRef90	UHGV-0141008_18	UniRef90_A0A415K1C7	566.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0141008_18	742741.HMPREF9475_00425	527.0	0	Phage capsid family	N/A
Pfam	UHGV-0141008_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0141008_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0141008_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0141008_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0141008_19	K01358	107.5	1.8e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0141008_19	phrog_94	210.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0141008_19	UniRef90_A0A1C5T576	392.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0141008_19	742741.HMPREF9475_00424	372.0	0	Clp protease	N/A
Pfam	UHGV-0141008_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0141008_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0141008_19	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_20	phrog_12	282.3	0	portal protein	head and packaging
UniRef90	UHGV-0141008_20	UniRef90_A0A412Q229	607.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0141008_20	411468.CLOSCI_01489	605.0	0	Phage portal protein	N/A
Pfam	UHGV-0141008_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0141008_20	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0141008_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0141008_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_21	phrog_9	374.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0141008_21	UniRef90_A0A174ZPG1	984.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0141008_21	411468.CLOSCI_01488	961.0	0	Phage Terminase	N/A
Pfam	UHGV-0141008_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0141008_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0141008_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0141008_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_22	phrog_83	103.0	2.9e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0141008_22	UniRef90_B0NDF9	259.0	0	Phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-0141008_22	411468.CLOSCI_01487	259.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0141008_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0141008_22	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0141008_22	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0141008_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_23	phrog_144	86.6	2.9e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141008_23	UniRef90_B0NDF8	235.0	0	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-0141008_23	411468.CLOSCI_01486	235.0	0	N/A	N/A
PHROG	UHGV-0141008_24	phrog_1558	117.2	1.3e-34	N/A	unknown function
UniRef90	UHGV-0141008_24	UniRef90_A0A174GQI9	80.9	1.71e-16	Sigma-70 region 4 type 2	N/A
eggNOG-mapper	UHGV-0141008_24	411468.CLOSCI_01485	178.0	0	N/A	N/A
structural_annotation	UHGV-0141008_24	PF06530,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141008_26	UniRef90_A0A174QL97	77.4	1.55e-17	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0141008_26	1304866.K413DRAFT_0813	97.8	1.92e-26	N/A	N/A
structural_annotation	UHGV-0141008_26	NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_28	phrog_7566	107.2	7.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0141008_28	411459.RUMOBE_00948	106.0	2.15e-28	N/A	N/A
PHROG	UHGV-0141008_29	phrog_20593	45.3	0.000000000001	N/A	unknown function
PHROG	UHGV-0141008_30	phrog_24368	50.0	0.000000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0141008_30	1235792.C808_00071	52.8	0.000000467	N/A	N/A
KOfam	UHGV-0141008_33	K00558	231.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0141008_33	phrog_116	263.4	0	DNA methyltransferase	other
UniRef90	UHGV-0141008_33	UniRef90_UPI001A9A61ED	941.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0141008_33	1235800.C819_02255	717.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0141008_33	MTase_II_00020	114.7	9.7e-37	Type II methyltransferase	RM
Pfam	UHGV-0141008_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0141008_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0141008_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0141008_34	K00571	90.6	1.8e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0141008_34	phrog_16	231.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141008_34	UniRef90_A0A373ZDW3	1704.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0141008_34	1298920.KI911353_gene2709	1386.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0141008_34	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0141008_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0141008_34	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0141008_34	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0141008_35	K03091	47.1	0.00000000000048	sigH; RNA polymerase sporulation-specific sigma factor	N/A
COG	UHGV-0141008_35	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
KOfam	UHGV-0141008_36	K03469	42.4	0.000000000013	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
UniRef90	UHGV-0141008_36	UniRef90_A0A417PKX1	298.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0141008_36	1116472.MGMO_8c00720	62.8	0.000000000219	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0141008_36	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0141008_36	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0141008_36	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0141008_37	phrog_3584	141.7	4.90034e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0141008_37	483218.BACPEC_01173	239.0	0	N/A	N/A
structural_annotation	UHGV-0141008_37	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141008_39	UniRef90_R5VU56	130.0	2.87e-37	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-0141008_39	PF20063	N/A	N/A	N/A	N/A