UHGV-0141826 (vOTU-061962)

Viral Genome: UHGV-0141826

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0141826
vOTU ID	vOTU-061962
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_414075
Associated BioSample	SAMN05414939
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.22 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.29
Jumbo phage	No

Genome content
Genome length (bp)	34,047
GC content	57.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	95%
Average CDS length (bps)	661.53
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0141826_1	K06909	128.2	8.6e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0141826_1	phrog_979	135.7	1.40004e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0141826_1	UniRef90_A0A1M5YHQ5	643.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0141826_1	693746.OBV_01690	518.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0141826_1	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0141826_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0141826_1	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_3	phrog_156	140.1	3.59994e-42	portal protein	head and packaging
eggNOG-mapper	UHGV-0141826_3	693746.OBV_01670	555.0	0	N/A	N/A
structural_annotation	UHGV-0141826_3	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_5	phrog_422	123.7	1.5e-36	major head protein	head and packaging
UniRef90	UHGV-0141826_5	UniRef90_K1S1E0	355.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-0141826_5	693746.OBV_01700	213.0	0	N/A	N/A
Pfam	UHGV-0141826_5	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0141826_5	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141826_6	1519439.JPJG01000011_gene57	89.0	1.44e-20	N/A	N/A
structural_annotation	UHGV-0141826_6	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141826_7	UniRef90_A0A4D7ASB8	436.0	0	N/A	N/A
eggNOG-mapper	UHGV-0141826_7	693746.OBV_01680	467.0	0	N/A	N/A
structural_annotation	UHGV-0141826_7	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_8	phrog_32822	53.2	0.0000000000000017	virion structural protein	head and packaging
structural_annotation	UHGV-0141826_8	PF04582	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141826_9	PF10651,NF038186	N/A	N/A	N/A	N/A
KOfam	UHGV-0141826_10	K06236	53.2	0.000000000000002	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0141826_10	phrog_11541	92.3	5.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0141826_10	763034.HMPREF9446_00480	60.8	0.00000224	N/A	N/A
Pfam	UHGV-0141826_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0141826_10	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
KOfam	UHGV-0141826_11	K01447	69.0	9.6e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0141826_11	phrog_1794	146.9	1.90577e-43	amidase	lysis
UniRef90	UHGV-0141826_11	UniRef90_R5AZE6	270.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0141826_11	1235793.C809_04312	211.0	0	Ami_2	N/A
Pfam	UHGV-0141826_11	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0141826_11	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0141826_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0141826_11	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_12	phrog_962	78.6	9e-23	holin	lysis
UniRef90	UHGV-0141826_12	UniRef90_C0BX79	103.0	4.75e-27	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-0141826_12	553973.CLOHYLEM_04415	103.0	7.96e-28	Bacteriophage holin	N/A
Pfam	UHGV-0141826_12	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0141826_12	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0141826_12	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141826_12	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141826_14	693746.OBV_01600	89.4	1.32e-16	N/A	N/A
eggNOG-mapper	UHGV-0141826_15	1519439.JPJG01000011_gene53	362.0	0	N/A	N/A
PHROG	UHGV-0141826_16	phrog_474	104.5	1.7e-30	phosphofructokinase	other
UniRef90	UHGV-0141826_16	UniRef90_K1TIM3	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0141826_16	1203606.HMPREF1526_00237	99.4	9.91e-25	N/A	N/A
Pfam	UHGV-0141826_16	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0141826_16	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0141826_18	K03091	55.8	9.4e-16	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0141826_18	phrog_351	43.4	3.8e-17	RNA polymerase sigma factor	transcription regulation
eggNOG-mapper	UHGV-0141826_18	445972.ANACOL_03331	57.0	0.000000373	N/A	N/A
Pfam	UHGV-0141826_18	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-0141826_18	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0141826_18	PF04542,MF_00961,TIGR02835,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_21	phrog_22543	49.1	0.000000000000091	N/A	unknown function
UniRef90	UHGV-0141826_21	UniRef90_A0A8D9PDT5	53.1	0.00000078	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-0141826_22	UniRef90_Q5YA82	92.8	6.46e-23	28	N/A
dbAPIS	UHGV-0141826_22	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0141826_23	phrog_3392	114.3	1.2e-33	N/A	unknown function
UniRef90	UHGV-0141826_23	UniRef90_Q6J807	84.7	1.4e-17	Pas24	N/A
eggNOG-mapper	UHGV-0141826_23	1217710.F969_00044	112.0	2.15e-27	N/A	N/A
PHROG	UHGV-0141826_24	phrog_3136	120.3	7.6e-36	N/A	unknown function
UniRef90	UHGV-0141826_24	UniRef90_UPI001A9A8D4F	116.0	2.13e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0141826_24	97139.C824_00742	52.4	0.0000052	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0141826_24	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0141826_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0141826_24	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141826_25	665956.HMPREF1032_03087	101.0	9.78e-26	N/A	N/A
structural_annotation	UHGV-0141826_25	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_28	phrog_1770	50.6	0.000000000000036	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0141826_28	536233.CLO_1822	118.0	2.46e-31	N/A	N/A
structural_annotation	UHGV-0141826_28	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_29	phrog_8489	204.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141826_29	UniRef90_UPI001A8FB48D	199.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0141826_29	1139219.I569_00860	180.0	0	DnaD domain protein	N/A
COG	UHGV-0141826_29	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0141826_29	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0141826_30	K03111	78.5	1.5e-22	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0141826_30	phrog_44	69.8	6.2e-20	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141826_30	UniRef90_A0A4Z0CEI8	60.8	0.0000000176	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0141826_30	1074488.AGBX01000001_gene892	58.5	0.0000000193	Single-strand binding protein family	N/A
Pfam	UHGV-0141826_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0141826_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0141826_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_31	phrog_14970	246.6	0	N/A	unknown function
UniRef90	UHGV-0141826_31	UniRef90_A0A3P6JH63	210.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0141826_31	411468.CLOSCI_00315	211.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0141826_31	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0141826_31	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0141826_31	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0141826_35	phrog_757	118.2	4.9e-35	DNA methyltransferase	other
UniRef90	UHGV-0141826_35	UniRef90_A0A417JTT5	179.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0141826_35	1095750.HMPREF9970_0173	176.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0141826_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0141826_35	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141826_37	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-0141826_42	PF02150	N/A	N/A	RNA polymerases M/15 Kd subunit	RNA_POL_M_15KD
KOfam	UHGV-0141826_44	K18830	43.4	0.0000000000062	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0141826_44	phrog_4	42.6	0.000000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-0141826_44	UniRef90_UPI0013DE7A28	132.0	2.47e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0141826_44	1235797.C816_03553	100.0	6.5e-25	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0141826_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0141826_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0141826_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0141826_45	K07729	66.6	5.4e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0141826_45	phrog_5823	42.5	0.0000000000086	transcriptional regulator	transcription regulation
UniRef90	UHGV-0141826_45	UniRef90_R5AVU4	67.4	0.000000000000173	CI-like repressor	N/A
eggNOG-mapper	UHGV-0141826_45	1292020.H483_0116665	61.6	0.00000000000648	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0141826_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0141826_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0141826_45	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0141826_48	K14059	106.8	3.6e-31	int; integrase	N/A
PHROG	UHGV-0141826_48	phrog_1	126.0	4.2e-37	integrase	integration and excision
UniRef90	UHGV-0141826_48	UniRef90_A0A2Z4QB94	302.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0141826_48	1384066.JAGT01000001_gene153	119.0	1.94e-28	Phage integrase family	N/A
Pfam	UHGV-0141826_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0141826_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0141826_48	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0141826_49	PF14106	N/A	N/A	N/A	DUF4279