UHGV-0142033 (vOTU-046054)

Viral Genome: UHGV-0142033

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0142033
vOTU ID	vOTU-046054
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_399120
Associated BioSample	SAMN05356870
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.23
Jumbo phage	No

Genome content
Genome length (bp)	38,343
GC content	59.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	90%
Average CDS length (bps)	558.68
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0142033_1	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_6	phrog_16490	40.7	0.00000000004	N/A	unknown function
structural_annotation	UHGV-0142033_7	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0142033_9	1378168.N510_03079	62.8	0.00000000181	N/A	N/A
KOfam	UHGV-0142033_10	K14059	99.3	6.6e-29	int; integrase	N/A
PHROG	UHGV-0142033_10	phrog_1	123.1	3.2e-36	integrase	integration and excision
UniRef90	UHGV-0142033_10	UniRef90_G4L0W3	501.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0142033_10	693746.OBV_43340	501.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0142033_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0142033_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0142033_10	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0142033_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0142033_11	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0142033_13	K22300	43.8	0.0000000000052	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0142033_13	UniRef90_G4L1F8	108.0	1.57e-28	Putative Xre family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0142033_13	693746.OBV_19770	108.0	2.63e-29	sequence-specific DNA binding	N/A
Pfam	UHGV-0142033_13	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0142033_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0142033_13	PF12844,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_16	phrog_8	53.5	0.000000000000006	transcriptional regulator	transcription regulation
UniRef90	UHGV-0142033_16	UniRef90_A0A7U9T6J8	119.0	7.91e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0142033_16	97138.C820_00783	92.0	1.37e-23	Helix-turn-helix domain	N/A
Pfam	UHGV-0142033_16	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0142033_16	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0142033_17	K07729	63.3	5.8e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0142033_17	phrog_8	50.1	0.000000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0142033_17	UniRef90_UPI00030EB95F	70.1	0.0000000000000162	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0142033_17	1007096.BAGW01000011_gene2356	70.1	0.00000000000000272	sequence-specific DNA binding	N/A
Pfam	UHGV-0142033_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0142033_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0142033_17	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0142033_18	1235835.C814_03153	80.1	3.69e-19	N/A	N/A
structural_annotation	UHGV-0142033_18	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_19	phrog_6499	138.1	2.29995e-41	transcriptional regulator	transcription regulation
UniRef90	UHGV-0142033_19	UniRef90_UPI001C01DF91	137.0	1.42e-37	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0142033_19	1226322.HMPREF1545_00092	127.0	2.5e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0142033_19	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0142033_19	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0142033_19	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_20	phrog_270	134.0	1.4e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142033_20	UniRef90_UPI0006877B23	205.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0142033_20	1007096.BAGW01000033_gene1617	148.0	4.06937e-42	ROK family	N/A
Pfam	UHGV-0142033_20	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0142033_20	COG3355	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-0142033_20	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0142033_21	K17680	177.9	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0142033_21	phrog_239	143.7	1.60028e-42	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142033_21	UniRef90_UPI001BB47D1B	697.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0142033_21	693746.OBV_19840	597.0	0	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-0142033_21	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0142033_21	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0142033_21	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
KOfam	UHGV-0142033_23	K03496	213.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0142033_23	phrog_164	177.2	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142033_23	UniRef90_UPI001BB48231	286.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0142033_23	693746.OBV_19850	227.0	0	Anion-transporting ATPase	N/A
Pfam	UHGV-0142033_23	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0142033_23	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0142033_23	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0142033_24	K03497	90.2	4.2e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0142033_24	phrog_27290	120.5	3.40516e-43	N/A	unknown function
UniRef90	UHGV-0142033_24	UniRef90_UPI00195EFCA8	390.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0142033_24	742738.HMPREF9460_00856	115.0	9.47e-25	ParB-like nuclease domain	N/A
Pfam	UHGV-0142033_24	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0142033_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0142033_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0142033_24	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0142033_27	K03111	131.8	8.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0142033_27	phrog_44	129.4	2.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142033_27	UniRef90_UPI001C02B0E9	231.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0142033_27	693746.OBV_12860	195.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0142033_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0142033_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0142033_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0142033_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0142033_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142033_29	UniRef90_UPI00145A074D	120.0	4.32e-30	N/A	N/A
structural_annotation	UHGV-0142033_29	PF07073	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_30	phrog_38832	52.5	2.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0142033_30	445972.ANACOL_00165	61.6	0.00000000252	N/A	N/A
PHROG	UHGV-0142033_31	phrog_1384	125.0	5.2e-37	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0142033_31	428125.CLOLEP_01816	269.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0142033_31	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_35	phrog_22543	47.7	0.00000000000027	N/A	unknown function
UniRef90	UHGV-0142033_35	UniRef90_A0A8D9PDT5	54.3	0.000000407	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0142033_38	phrog_3584	72.7	5.1e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0142033_38	693746.OBV_19950	301.0	0	N/A	N/A
structural_annotation	UHGV-0142033_38	PF05840	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142033_39	UniRef90_UPI001F232519	83.6	7.58e-20	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0142033_39	1226322.HMPREF1545_00110	97.4	4e-26	Cysteine-rich KTR	N/A
Pfam	UHGV-0142033_39	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
PHROG	UHGV-0142033_40	phrog_144	94.0	1.5e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142033_40	UniRef90_UPI001EDE5545	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0142033_40	693746.OBV_19960	167.0	0	HNH endonuclease	N/A
Pfam	UHGV-0142033_40	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0142033_40	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0142033_40	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_41	phrog_21498	261.1	0	N/A	unknown function
UniRef90	UHGV-0142033_41	UniRef90_C7MM70	289.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0142033_41	469378.Ccur_02830	289.0	0	DNA binding	N/A
PADLOC	UHGV-0142033_41	MTase_II_00015	113.9	1.9e-33	Type II methyltransferase	RM
Pfam	UHGV-0142033_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0142033_41	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0142033_41	PF02195,MF_02015,TIGR04285,TIGR01712,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_42	phrog_83	86.6	3.1e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0142033_42	UniRef90_UPI001EDE2A13	237.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0142033_42	1007096.BAGW01000012_gene2373	149.0	7.9874e-44	Phage terminase, small subunit	N/A
Pfam	UHGV-0142033_42	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0142033_42	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0142033_42	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0142033_42	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_43	phrog_9	325.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0142033_43	UniRef90_A0A845R4S1	919.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0142033_43	742738.HMPREF9460_00872	794.0	0	Phage Terminase	N/A
Pfam	UHGV-0142033_43	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0142033_43	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0142033_43	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0142033_43	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_45	phrog_12	254.7	0	portal protein	head and packaging
UniRef90	UHGV-0142033_45	UniRef90_UPI001958B72F	573.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0142033_45	1007103.AFHW01000142_gene1297	182.0	0	Phage portal protein	N/A
Pfam	UHGV-0142033_45	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0142033_45	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0142033_45	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0142033_45	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0142033_46	K01358	103.4	3.2e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0142033_46	phrog_94	193.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0142033_46	UniRef90_UPI00124513AA	301.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0142033_46	557436.Lreu_1115	149.0	1.82001e-41	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0142033_46	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0142033_46	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0142033_46	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_47	phrog_10	88.4	1.1e-25	major head protein	head and packaging
UniRef90	UHGV-0142033_47	UniRef90_UPI000B37FFEF	485.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0142033_47	411902.CLOBOL_03879	118.0	8.48e-27	Phage capsid family	N/A
Pfam	UHGV-0142033_47	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0142033_47	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0142033_47	PF05065,PF14182,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142033_48	UniRef90_UPI001C018007	111.0	1.48e-29	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0142033_48	742738.HMPREF9460_00878	107.0	8.46e-29	N/A	N/A
NCBIFam	UHGV-0142033_48	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0142033_48	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_49	phrog_25	50.9	0.000000000000028	head closure Hc1	connector
UniRef90	UHGV-0142033_49	UniRef90_UPI001898DBDF	103.0	2.57e-26	phage head closure protein	N/A
eggNOG-mapper	UHGV-0142033_49	1536773.R70331_25705	49.3	0.00000487	Phage head-tail adaptor	N/A
Pfam	UHGV-0142033_49	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0142033_49	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0142033_49	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0142033_49	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142033_50	UniRef90_A0A4S2AEF8	59.7	0.00000000381	Phage tail protein	N/A
eggNOG-mapper	UHGV-0142033_50	1203606.HMPREF1526_00975	75.9	3.02e-16	N/A	N/A
structural_annotation	UHGV-0142033_50	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142033_51	UniRef90_R5IIS5	97.4	3.16e-23	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0142033_51	1203606.HMPREF1526_00974	83.2	1.98e-18	N/A	N/A
structural_annotation	UHGV-0142033_51	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_52	phrog_88	51.9	0.000000000000015	major tail protein	tail
UniRef90	UHGV-0142033_52	UniRef90_R5EB96	190.0	0	Phage major tail protein phi13 family	N/A
structural_annotation	UHGV-0142033_52	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_54	phrog_23464	229.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0142033_54	33035.JPJF01000023_gene3232	233.0	0	phage tail tape measure protein	N/A
COG	UHGV-0142033_54	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0142033_54	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_56	phrog_32744	712.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0142033_56	1120998.AUFC01000030_gene2247	202.0	0	N/A	N/A
structural_annotation	UHGV-0142033_56	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0142033_57	phrog_3904	75.8	2.9e-22	tail fiber protein	tail
eggNOG-mapper	UHGV-0142033_57	1226322.HMPREF1545_00064	58.2	0.00000427	N/A	N/A
PHROG	UHGV-0142033_58	phrog_4105	75.1	8.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0142033_58	411460.RUMTOR_01326	56.6	0.00000000526	N/A	N/A
PHROG	UHGV-0142033_59	phrog_13256	69.4	3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0142033_59	1226322.HMPREF1545_00132	70.5	0.00000000000000272	N/A	N/A
KOfam	UHGV-0142033_61	K08640	89.6	5.6e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0142033_61	phrog_18955	154.0	0	N/A	unknown function
UniRef90	UHGV-0142033_61	UniRef90_UPI001C035E39	597.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0142033_61	1235797.C816_04171	335.0	0	Peptidase M15	N/A
Pfam	UHGV-0142033_61	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0142033_61	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0142033_61	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142033_61	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A