UHGV-0143155 (vOTU-004094)

Viral Genome: UHGV-0143155

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0143155
vOTU ID	vOTU-004094
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_419000
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.72
Jumbo phage	No

Genome content
Genome length (bp)	23,931
GC content	39.69%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	91%
Average CDS length (bps)	574.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0143155_1	K00571	174.4	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0143155_1	phrog_67	156.6	0	DNA methyltransferase	other
UniRef90	UHGV-0143155_1	UniRef90_A0A374DDR5	457.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0143155_1	877240.E1AC06_9CAUD	249.0	0	helicase activity	N/A
PADLOC	UHGV-0143155_1	MTase_II_00157	170.7	0	Type II methyltransferase	RM
Pfam	UHGV-0143155_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0143155_1	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0143155_2	K07273	199.7	0	acm; lysozyme	N/A
PHROG	UHGV-0143155_2	phrog_291	169.9	0	endolysin	lysis
UniRef90	UHGV-0143155_2	UniRef90_A0A373KPS8	540.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0143155_2	1120933.ATUY01000002_gene158	169.0	0	lysozyme activity	N/A
Pfam	UHGV-0143155_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0143155_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0143155_2	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0143155_2	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_3	phrog_774	60.3	4.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0143155_3	397290.C810_05225	112.0	3.41e-31	N/A	N/A
PHROG	UHGV-0143155_4	phrog_443	64.6	2.6e-18	holin	lysis
UniRef90	UHGV-0143155_4	UniRef90_R6R2Q3	88.6	9.06e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0143155_4	1235797.C816_04172	82.0	6.09e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0143155_4	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0143155_4	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_5	phrog_1863	70.6	1.9e-21	N/A	unknown function
UniRef90	UHGV-0143155_5	UniRef90_UPI001F223E8B	103.0	2.53e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0143155_5	1226322.HMPREF1545_04027	75.1	7.65e-17	N/A	N/A
UniRef90	UHGV-0143155_7	UniRef90_A0A374N9Y2	316.0	0	N/A	N/A
Pfam	UHGV-0143155_7	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0143155_7	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_8	phrog_1067	144.6	6.19374e-43	minor head protein	head and packaging
UniRef90	UHGV-0143155_8	UniRef90_A0A348ZBV6	182.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0143155_8	1160721.RBI_I01574	127.0	3.68e-29	Prophage endopeptidase tail	N/A
Pfam	UHGV-0143155_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0143155_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0143155_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0143155_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_9	phrog_33	58.0	2.8e-16	distal tail protein Dit	tail
UniRef90	UHGV-0143155_9	UniRef90_A0A1G5CPA2	110.0	1.79e-25	Phage-related protein	N/A
eggNOG-mapper	UHGV-0143155_9	1246.JMEA01000006_gene51	71.6	0.00000000000486	phage tail	N/A
COG	UHGV-0143155_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0143155_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_10	phrog_23464	253.3	0	N/A	unknown function
UniRef90	UHGV-0143155_10	UniRef90_A0A1C6JGQ9	171.0	5.92049e-42	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0143155_10	1378168.N510_03078	178.0	4.2039e-45	Tail tape measure protein, TP901 family	N/A
COG	UHGV-0143155_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0143155_10	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_12	phrog_1021	44.0	0.00000000000014	N/A	unknown function
PHROG	UHGV-0143155_13	phrog_885	136.0	2.5e-40	major tail protein	tail
UniRef90	UHGV-0143155_13	UniRef90_Q894J4	163.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-0143155_13	1321814.HMPREF9089_00935	174.0	0	N/A	N/A
structural_annotation	UHGV-0143155_13	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0143155_14	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143155_15	UniRef90_UPI001A9B6FBF	162.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0143155_15	642492.Clole_0747	134.0	1.76e-38	N/A	N/A
structural_annotation	UHGV-0143155_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_16	phrog_1951	97.8	6.6e-29	head-tail adaptor	connector
UniRef90	UHGV-0143155_16	UniRef90_A0A373XMG4	219.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0143155_16	1536769.P40081_01090	66.6	0.000000000000798	head-tail adaptor	N/A
NCBIFam	UHGV-0143155_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0143155_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0143155_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_17	phrog_5223	54.2	0.000000000000002	neck protein	connector
UniRef90	UHGV-0143155_17	UniRef90_A0A174XIL0	95.1	1.72e-23	N/A	N/A
eggNOG-mapper	UHGV-0143155_17	411902.CLOBOL_03878	80.1	2.9e-18	N/A	N/A
PHROG	UHGV-0143155_18	phrog_10	128.3	8.4e-38	major head protein	head and packaging
UniRef90	UHGV-0143155_18	UniRef90_A0A373XLR3	723.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0143155_18	411468.CLOSCI_00548	378.0	0	Phage capsid family	N/A
Pfam	UHGV-0143155_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0143155_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0143155_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0143155_19	K01358	152.8	2.8026e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0143155_19	phrog_94	239.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0143155_19	UniRef90_A0A373XPG0	464.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0143155_19	1396.DJ87_978	251.0	0	Clp protease	N/A
Pfam	UHGV-0143155_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0143155_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0143155_19	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_20	phrog_12	172.6	0	portal protein	head and packaging
UniRef90	UHGV-0143155_20	UniRef90_A0A373XNZ6	777.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0143155_20	411468.CLOSCI_00550	400.0	0	Phage portal protein	N/A
Pfam	UHGV-0143155_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0143155_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0143155_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_21	phrog_9	312.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0143155_21	UniRef90_A0A373XNY0	1052.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0143155_21	411468.CLOSCI_00551	680.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0143155_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0143155_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0143155_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0143155_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_22	phrog_1066	60.8	2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0143155_22	931276.Cspa_c10130	67.8	0.000000000000925	N/A	N/A
PHROG	UHGV-0143155_23	phrog_119	70.3	2.8e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143155_23	UniRef90_A0A373XNZ9	200.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0143155_23	500633.CLOHIR_00362	122.0	3.52e-35	HNH endonuclease	N/A
Pfam	UHGV-0143155_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0143155_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0143155_24	394503.Ccel_3053	52.4	0.000000957	N/A	N/A
structural_annotation	UHGV-0143155_24	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_25	phrog_3584	144.4	7.90332e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0143155_25	1235800.C819_00515	70.5	0.0000000000134	N/A	N/A
structural_annotation	UHGV-0143155_25	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_28	phrog_8684	89.3	2.4e-26	N/A	unknown function
UniRef90	UHGV-0143155_28	UniRef90_A0A374DV44	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0143155_28	411473.RUMCAL_00283	75.5	0.00000000000000775	YopX protein	N/A
Pfam	UHGV-0143155_28	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0143155_28	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0143155_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_29	phrog_2118	118.7	5.3e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143155_29	UniRef90_A0A374DVG7	239.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0143155_29	610130.Closa_0730	149.0	5.60519e-45	HNH endonuclease	N/A
Pfam	UHGV-0143155_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0143155_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0143155_29	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0143155_31	phrog_824	88.7	6e-26	N/A	unknown function
UniRef90	UHGV-0143155_31	UniRef90_A0A3D3D6C6	162.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0143155_31	397288.C806_00096	112.0	1.36e-30	VRR_NUC	N/A
KOfam	UHGV-0143155_33	K03497	153.8	1.4013e-45	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0143155_33	phrog_6218	246.8	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143155_33	UniRef90_UPI000E47CAB6	818.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0143155_33	1160721.RBI_I01596	236.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0143155_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0143155_33	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0143155_33	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0143155_33	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0143155_35	COG1862	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143155_36	UniRef90_A0A2N0ULT9	102.0	4.76e-27	DNA binding domain, excisionase family	N/A
Pfam	UHGV-0143155_36	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0143155_36	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0143155_36	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
UniRef90	UHGV-0143155_38	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0143155_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0143155_38	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A