UHGV-0145076 (vOTU-059981)

Viral Genome: UHGV-0145076

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0145076
vOTU ID	vOTU-059981
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_400360
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.61 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.74
Jumbo phage	No

Genome content
Genome length (bp)	44,987
GC content	45.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	92%
Average CDS length (bps)	668.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0145076_2	K18830	62.3	1.2e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0145076_2	phrog_8	49.2	0.0000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0145076_2	UniRef90_R6X1Y8	215.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0145076_2	1151292.QEW_0725	92.0	1.98e-22	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0145076_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0145076_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0145076_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_4	phrog_6058	77.4	1.2e-22	N/A	unknown function
UniRef90	UHGV-0145076_4	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0145076_4	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-0145076_4	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145076_5	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_6	phrog_14367	69.4	2.8e-20	N/A	unknown function
UniRef90	UHGV-0145076_6	UniRef90_R6WTN1	211.0	0	Peptidoglycan-binding LysM	N/A
Pfam	UHGV-0145076_6	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0145076_6	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0145076_6	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_7	phrog_434	330.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0145076_7	UniRef90_R6WGP6	645.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0145076_7	706434.HMPREF9429_00551	357.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0145076_7	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0145076_7	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0145076_7	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0145076_7	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0145076_8	UniRef90_R6WLK2	164.0	0	Conserved domain protein	N/A
Pfam	UHGV-0145076_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0145076_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0145076_8	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0145076_9	K07455	187.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0145076_9	phrog_148	195.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0145076_9	UniRef90_R6XVK6	522.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0145076_9	218284.CCDN010000001_gene901	166.0	0	RecT family	N/A
Pfam	UHGV-0145076_9	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0145076_9	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0145076_9	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0145076_9	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_11	phrog_5968	149.9	1.26117e-44	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0145076_11	UniRef90_R6WTP4	186.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0145076_11	1211817.CCAT010000007_gene1058	127.0	3.82e-32	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0145076_11	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0145076_11	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0145076_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0145076_11	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0145076_14	K00558	261.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0145076_14	phrog_116	296.5	0	DNA methyltransferase	other
UniRef90	UHGV-0145076_14	UniRef90_R6WTQ1	758.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0145076_14	1235799.C818_00443	368.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0145076_14	MTase_II_00058	211.4	0	Type II methyltransferase	RM
Pfam	UHGV-0145076_14	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0145076_14	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0145076_14	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0145076_14	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145076_16	PF21098	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_17	phrog_10714	65.5	7.7e-19	N/A	unknown function
structural_annotation	UHGV-0145076_17	PF21173	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_18	phrog_3878	74.9	1.2e-21	N/A	unknown function
KOfam	UHGV-0145076_25	K01160	60.1	7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0145076_25	phrog_140	136.1	1.90001e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0145076_25	UniRef90_A0A316S9J1	145.0	4.3202e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0145076_25	743719.PaelaDRAFT_5642	126.0	2.2e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0145076_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0145076_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0145076_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0145076_26	K03111	55.7	0.0000000000000015	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0145076_26	phrog_44	59.1	1.4e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0145076_26	UniRef90_R6WGR4	252.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0145076_26	546268.NEISUBOT_05135	65.9	0.00000000000549	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0145076_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0145076_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0145076_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0145076_26	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145076_31	PF13983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145076_32	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0145076_34	K06909	87.5	1.9e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0145076_34	phrog_2	158.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0145076_34	UniRef90_UPI001D00EC11	409.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0145076_34	568816.Acin_1836	421.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0145076_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0145076_34	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
PHROG	UHGV-0145076_36	phrog_332	436.5	0	head-tail adaptor	connector
UniRef90	UHGV-0145076_36	UniRef90_UPI001F3F9DD9	540.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0145076_36	568816.Acin_1834	600.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0145076_36	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0145076_36	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_37	phrog_528	105.3	2.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0145076_37	1401067.HMPREF0872_06805	93.2	6.81e-23	N/A	N/A
PHROG	UHGV-0145076_38	phrog_458	152.6	2.8026e-45	protease	other
eggNOG-mapper	UHGV-0145076_38	568816.Acin_1832	97.8	2.82e-22	N/A	N/A
PHROG	UHGV-0145076_39	phrog_212	204.6	0	major head protein	head and packaging
UniRef90	UHGV-0145076_39	UniRef90_A0A6J5KPX9	218.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0145076_39	568816.Acin_1831	352.0	0	N/A	N/A
Pfam	UHGV-0145076_39	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0145076_39	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_40	phrog_427	64.2	2.2e-18	N/A	unknown function
structural_annotation	UHGV-0145076_40	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_41	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-0145076_41	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0145076_41	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0145076_41	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_42	phrog_376	611.7	0	tail protein	tail
UniRef90	UHGV-0145076_42	UniRef90_A0A0U1KV93	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-0145076_42	568816.Acin_1828	690.0	0	N/A	N/A
structural_annotation	UHGV-0145076_42	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_43	phrog_308	106.5	2.3e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0145076_43	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_44	phrog_418	133.4	5e-40	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0145076_44	568816.Acin_1826	106.0	9.87e-26	N/A	N/A
structural_annotation	UHGV-0145076_44	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
UniRef90	UHGV-0145076_45	UniRef90_A0A1Q6RQM5	1038.0	0	SLT domain-containing protein	N/A
COG	UHGV-0145076_45	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0145076_45	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_46	phrog_9880	545.2	0	N/A	unknown function
UniRef90	UHGV-0145076_46	UniRef90_A0A1Q6RQR6	4485.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0145076_46	1123288.SOV_1c10750	184.0	1.37327e-43	N/A	N/A
Pfam	UHGV-0145076_46	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0145076_47	phrog_1640	57.8	2.3e-16	tail protein	tail
eggNOG-mapper	UHGV-0145076_47	1115515.EV102420_06_00490	66.6	0.0000000142	N/A	N/A
structural_annotation	UHGV-0145076_47	PF03906	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145076_48	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_49	phrog_1141	62.0	1.1e-17	tail fiber protein	tail
UniRef90	UHGV-0145076_49	UniRef90_A0A1Q6R2G9	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-0145076_49	520709.F985_01945	63.5	0.000000000309	N/A	N/A
Pfam	UHGV-0145076_49	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0145076_49	PF14301,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_50	phrog_4105	83.6	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0145076_50	537013.CLOSTMETH_01753	79.0	1.48e-17	N/A	N/A
eggNOG-mapper	UHGV-0145076_52	1392502.JNIO01000008_gene1280	233.0	0	N/A	N/A
structural_annotation	UHGV-0145076_52	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_53	phrog_774	63.5	4.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0145076_53	397290.C810_05225	79.7	3.55e-18	N/A	N/A
UniRef90	UHGV-0145076_56	UniRef90_A0A316S6W0	102.0	8.78e-27	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0145076_56	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0145076_56	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0145076_56	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0145076_57	phrog_21718	44.0	0.000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0145076_58	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-0145076_59	phrog_16490	87.5	5.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0145076_59	445972.ANACOL_01880	82.8	3.37e-16	N/A	N/A
structural_annotation	UHGV-0145076_60	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0145076_61	1378168.N510_03079	57.0	0.000000137	N/A	N/A
UniRef90	UHGV-0145076_62	UniRef90_A0A2Z6ICF7	490.0	0	Permease	N/A
eggNOG-mapper	UHGV-0145076_62	626939.HMPREF9443_00786	714.0	0	glutamate:sodium symporter activity	N/A
COG	UHGV-0145076_62	COG0786	N/A	N/A	Na+/glutamate symporter	N/A