UHGV-0146359 (vOTU-090055)

Viral Genome: UHGV-0146359

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0146359
vOTU ID	vOTU-090055
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_417934
Associated BioSample	SAMN05578585
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.73 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.81
Jumbo phage	No

Genome content
Genome length (bp)	20,703
GC content	39.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	29
CDS density	95%
Average CDS length (bps)	676.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0146359_1	phrog_8684	76.0	5.1e-22	N/A	unknown function
UniRef90	UHGV-0146359_1	UniRef90_A0A396G7S7	75.9	0.0000000000000142	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0146359_1	742740.HMPREF9474_03496	70.5	0.000000000000259	YopX protein	N/A
Pfam	UHGV-0146359_1	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0146359_1	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
PHROG	UHGV-0146359_3	phrog_15198	90.7	1.5e-26	N/A	unknown function
UniRef90	UHGV-0146359_3	UniRef90_F7JQE9	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0146359_3	478749.BRYFOR_07594	114.0	8.59e-29	N/A	N/A
Pfam	UHGV-0146359_3	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0146359_3	PF04448	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_6	phrog_36	69.5	5.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0146359_6	UniRef90_A0A564VXK1	109.0	4.8e-28	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0146359_6	665950.HMPREF1025_02539	151.0	2.8026e-45	sigma factor activity	N/A
Pfam	UHGV-0146359_6	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0146359_6	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0146359_6	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0146359_7	K07451	48.1	0.00000000000023	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0146359_7	phrog_119	71.9	9.4e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0146359_7	UniRef90_UPI00164A3ACF	149.0	1.26117e-44	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0146359_7	1232452.BAIB02000007_gene1631	97.4	7.63e-25	HNH nucleases	N/A
Pfam	UHGV-0146359_7	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0146359_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0146359_8	phrog_5110	91.3	7.2e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0146359_8	UniRef90_A0A1C5LZF0	99.8	7.25e-25	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0146359_8	1423775.BAMN01000009_gene400	62.4	0.0000000000312	N/A	N/A
Pfam	UHGV-0146359_8	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0146359_8	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_9	phrog_9	265.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0146359_9	UniRef90_A0A3E3JY25	918.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0146359_9	1232452.BAIB02000007_gene1629	625.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0146359_9	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0146359_9	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0146359_9	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0146359_9	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_10	phrog_12	80.6	1.5e-23	portal protein	head and packaging
UniRef90	UHGV-0146359_10	UniRef90_A0A3E3JY21	455.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0146359_10	1232452.BAIB02000007_gene1627	424.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0146359_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0146359_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0146359_10	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0146359_11	K03427	195.1	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0146359_11	phrog_6380	302.8	0	DNA methyltransferase	other
UniRef90	UHGV-0146359_11	UniRef90_D4MVN1	466.0	0	Type I restriction-modification system methyltransferase subunit	N/A
eggNOG-mapper	UHGV-0146359_11	1201292.DR75_1654	242.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0146359_11	MTase_I_00005	211.3	0	Type I methyltransferase	RM
Pfam	UHGV-0146359_11	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0146359_11	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0146359_11	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0146359_12	PF01420,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-0146359_13	K01358	163.6	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0146359_13	phrog_94	235.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0146359_13	UniRef90_UPI00156EEE56	290.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0146359_13	1232452.BAIB02000007_gene1626	285.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0146359_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0146359_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0146359_13	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_14	phrog_10	87.4	1.5e-25	major head protein	head and packaging
UniRef90	UHGV-0146359_14	UniRef90_A0A3E3JY53	529.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0146359_14	1232452.BAIB02000007_gene1625	526.0	0	Phage capsid family	N/A
Pfam	UHGV-0146359_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0146359_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0146359_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0146359_14	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0146359_16	UniRef90_UPI00189B1559	127.0	1.17e-35	phage head closure protein	N/A
structural_annotation	UHGV-0146359_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0146359_17	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_18	phrog_5	56.9	6.2e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0146359_18	UniRef90_D4M595	108.0	3.5e-28	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0146359_18	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0146359_18	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0146359_18	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_19	phrog_88	85.0	1e-24	major tail protein	tail
UniRef90	UHGV-0146359_19	UniRef90_A0A3E3JYD8	254.0	0	Phage tail protein	N/A
Pfam	UHGV-0146359_19	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0146359_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0146359_19	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0146359_19	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_21	phrog_1272	229.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0146359_21	UniRef90_A0A7G5N113	518.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0146359_21	411468.CLOSCI_00540	376.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0146359_21	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0146359_21	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0146359_21	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0146359_22	phrog_33	60.7	3.1e-17	distal tail protein Dit	tail
UniRef90	UHGV-0146359_22	UniRef90_A0A350VIV2	249.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0146359_22	1235798.C817_02569	203.0	0	tail component	N/A
COG	UHGV-0146359_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0146359_22	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_23	phrog_13289	419.7	0	tail protein	tail
UniRef90	UHGV-0146359_23	UniRef90_UPI001570BE36	679.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0146359_23	1235798.C817_02568	446.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0146359_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0146359_23	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0146359_23	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0146359_23	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0146359_24	phrog_14030	124.3	8.9e-37	N/A	unknown function
UniRef90	UHGV-0146359_24	UniRef90_A0A6L9SW89	139.0	3.7e-38	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0146359_24	1195236.CTER_2407	133.0	4.38e-36	NlpC/P60 family	N/A
Pfam	UHGV-0146359_24	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0146359_24	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
COG	UHGV-0146359_25	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0146359_27	phrog_937	78.0	1.1e-22	hemolysin	other
eggNOG-mapper	UHGV-0146359_27	411459.RUMOBE_01081	103.0	4.31e-27	N/A	N/A
PHROG	UHGV-0146359_28	phrog_18218	141.0	3.00018e-42	N/A	unknown function
UniRef90	UHGV-0146359_28	UniRef90_A0A850HIH4	166.0	0	Ribonuclease	N/A
eggNOG-mapper	UHGV-0146359_28	665950.HMPREF1025_02514	156.0	0	N/A	N/A
structural_annotation	UHGV-0146359_28	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0146359_29	K01447	70.8	2.5e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0146359_29	phrog_833	215.8	0	endolysin	lysis
UniRef90	UHGV-0146359_29	UniRef90_F3AXQ7	544.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0146359_29	411460.RUMTOR_02101	545.0	0	COG NOG33632 non supervised orthologous group	N/A
Pfam	UHGV-0146359_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0146359_29	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0146359_29	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A