UHGV-0147601 (vOTU-021862)

Viral Genome: UHGV-0147601

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0147601
vOTU ID	vOTU-021862
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_405363
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.07 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.32
Jumbo phage	No

Genome content
Genome length (bp)	23,706
GC content	38.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	32
CDS density	92%
Average CDS length (bps)	683.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0147601_1	K22300	43.0	0.0000000000096	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0147601_1	phrog_3	45.3	0.0000000000039	transcriptional repressor	transcription regulation
UniRef90	UHGV-0147601_1	UniRef90_UPI000C8394C0	90.1	3.64e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0147601_1	1123311.KB904533_gene2085	48.9	0.00000584	sequence-specific DNA binding	N/A
Pfam	UHGV-0147601_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0147601_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0147601_1	PF01381,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0147601_2	K14059	196.2	0	int; integrase	N/A
PHROG	UHGV-0147601_2	phrog_1	208.0	0	integrase	integration and excision
UniRef90	UHGV-0147601_2	UniRef90_UPI00041838CC	327.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0147601_2	1123263.AUKY01000012_gene1957	327.0	0	Pfam:Integrase_AP2	N/A
Pfam	UHGV-0147601_2	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0147601_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0147601_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0147601_2	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_3	phrog_33625	76.6	1.7e-22	holin	lysis
UniRef90	UHGV-0147601_3	UniRef90_UPI00137381C3	139.0	3.56995e-41	phage holin	N/A
eggNOG-mapper	UHGV-0147601_3	1385512.N784_12970	119.0	6.05e-34	Bacteriophage holin	N/A
Pfam	UHGV-0147601_3	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0147601_3	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0147601_3	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0147601_3	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0147601_4	445971.ANASTE_00732	64.7	0.00000000000545	N/A	N/A
KOfam	UHGV-0147601_5	K07273	194.4	0	acm; lysozyme	N/A
PHROG	UHGV-0147601_5	phrog_291	203.3	0	endolysin	lysis
UniRef90	UHGV-0147601_5	UniRef90_UPI001D017004	313.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0147601_5	1235798.C817_00299	251.0	0	family 25	N/A
Pfam	UHGV-0147601_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0147601_5	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0147601_5	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0147601_5	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0147601_5	PF01183,COG3757	N/A	N/A	N/A	N/A
Pfam	UHGV-0147601_6	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0147601_6	PF09693,TIGR01669	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0147601_7	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_8	phrog_372	234.4	0	tail protein	tail
UniRef90	UHGV-0147601_8	UniRef90_UPI0011DE390F	135.0	1.95e-30	N/A	N/A
eggNOG-mapper	UHGV-0147601_8	764299.STRIC_1425	97.8	4.25e-19	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0147601_8	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0147601_8	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0147601_8	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_9	phrog_19556	116.7	2.1e-34	tail fiber protein; host specificity	tail
UniRef90	UHGV-0147601_9	UniRef90_A0A374AEU0	107.0	3.67e-21	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0147601_9	428127.EUBDOL_01565	179.0	2.8026e-45	cellulase activity	N/A
Pfam	UHGV-0147601_9	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
COG	UHGV-0147601_9	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0147601_9	PF03921,PF03426,NF041425,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_10	phrog_38044	117.4	0	N/A	unknown function
UniRef90	UHGV-0147601_10	UniRef90_I7ARM6	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-0147601_10	1504823.CCMM01000008_gene1029	301.0	0	N/A	N/A
structural_annotation	UHGV-0147601_10	PF14874,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_11	phrog_1067	320.5	0	minor head protein	head and packaging
UniRef90	UHGV-0147601_11	UniRef90_A0A890GYC9	427.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0147601_11	1123263.AUKY01000068_gene489	407.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0147601_11	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0147601_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0147601_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0147601_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0147601_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_12	phrog_33	61.8	1.9e-17	distal tail protein Dit	tail
UniRef90	UHGV-0147601_12	UniRef90_A0A2X2UUQ3	139.0	4.67e-37	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0147601_12	1123263.AUKY01000068_gene490	210.0	0	tail component	N/A
COG	UHGV-0147601_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0147601_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_13	phrog_6900	244.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0147601_13	UniRef90_A0A1C6EH41	308.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0147601_13	12390.Q77MU4_9CAUD	278.0	0	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-0147601_13	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_14	phrog_1633	111.7	4.5e-33	N/A	unknown function
UniRef90	UHGV-0147601_14	UniRef90_UPI001389891D	103.0	6.96e-26	N/A	N/A
eggNOG-mapper	UHGV-0147601_14	883110.HMPREF9260_00651	94.4	2.82e-23	N/A	N/A
structural_annotation	UHGV-0147601_14	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_15	phrog_1526	55.0	0.0000000000000014	N/A	unknown function
PHROG	UHGV-0147601_16	phrog_117	138.2	4.60004e-41	major tail protein	tail
UniRef90	UHGV-0147601_16	UniRef90_A0A3E5D5Z0	201.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0147601_16	1121864.OMO_02158	200.0	0	domain, Protein	N/A
COG	UHGV-0147601_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0147601_16	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_17	phrog_123	72.9	4.9e-21	tail terminator	connector
UniRef90	UHGV-0147601_17	UniRef90_A0A2A5RIK6	114.0	7.68e-31	N/A	N/A
eggNOG-mapper	UHGV-0147601_17	875454.BAEW01000017_gene1591	128.0	5.95e-37	N/A	N/A
structural_annotation	UHGV-0147601_17	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_18	phrog_387	79.4	3.3e-23	neck protein	connector
UniRef90	UHGV-0147601_18	UniRef90_A0A0E4H9B2	50.1	0.00000392	N/A	N/A
eggNOG-mapper	UHGV-0147601_18	1289597.M1PKU8_9CAUD	58.5	0.00000000032	N/A	N/A
PHROG	UHGV-0147601_19	phrog_501	93.4	2e-27	head closure Hc1	connector
UniRef90	UHGV-0147601_19	UniRef90_A0A139QHM6	142.0	1.29004e-41	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0147601_19	157924.Q7Y4I1_9CAUD	136.0	4.02999e-40	N/A	N/A
structural_annotation	UHGV-0147601_19	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_20	phrog_137	78.6	6.5e-23	head-tail adaptor Ad1	connector
UniRef90	UHGV-0147601_20	UniRef90_UPI000C83D02F	134.0	8.9e-38	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0147601_20	706433.HMPREF9430_01264	131.0	1.36e-37	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0147601_20	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0147601_20	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_22	phrog_32396	133.0	8e-40	N/A	unknown function
UniRef90	UHGV-0147601_22	UniRef90_A0A7X2NQN8	431.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0147601_22	706433.HMPREF9430_01265	446.0	0	Phage capsid family	N/A
Pfam	UHGV-0147601_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0147601_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0147601_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_23	phrog_233	89.1	1.1e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0147601_23	UniRef90_A0A890GYE3	178.0	0	N/A	N/A
eggNOG-mapper	UHGV-0147601_23	706433.HMPREF9430_01266	174.0	0	N/A	N/A
Pfam	UHGV-0147601_23	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0147601_23	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_24	phrog_17688	346.2	0	N/A	unknown function
UniRef90	UHGV-0147601_24	UniRef90_E7MNZ6	675.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0147601_24	706433.HMPREF9430_01267	675.0	0	phage terminase, large subunit	N/A
COG	UHGV-0147601_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0147601_24	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_26	phrog_3675	76.8	1.8e-22	N/A	unknown function
UniRef90	UHGV-0147601_26	UniRef90_UPI001C385ABB	118.0	3.36e-32	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0147601_26	1111134.HMPREF1253_1941	68.6	0.000000000000184	YjcQ protein	N/A
Pfam	UHGV-0147601_26	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0147601_26	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
UniRef90	UHGV-0147601_27	UniRef90_R6QRM6	57.4	0.00000000364	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0147601_27	1121335.Clst_0388	47.0	0.00000529	N/A	N/A
PHROG	UHGV-0147601_28	phrog_2494	43.5	0.0000000000022	minor head protein	head and packaging
eggNOG-mapper	UHGV-0147601_28	1321784.HMPREF1987_01068	60.8	0.000000212	cell adhesion	N/A
COG	UHGV-0147601_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0147601_28	PF14076	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_29	phrog_104	256.2	0	portal protein	head and packaging
UniRef90	UHGV-0147601_29	UniRef90_A0A890GW77	529.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0147601_29	706433.HMPREF9430_01270	507.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0147601_29	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0147601_30	phrog_338	99.1	5.5e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0147601_30	UniRef90_E7MP00	171.0	0	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-0147601_30	706433.HMPREF9430_01271	171.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0147601_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0147601_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0147601_30	PF01844	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0147601_31	1232446.BAIE02000003_gene848	53.1	0.00000001	N/A	N/A
Pfam	UHGV-0147601_31	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0147601_31	PF09274,COG4710	N/A	N/A	N/A	N/A