UHGV-0148735 (vOTU-087480)

Viral Genome: UHGV-0148735

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0148735
vOTU ID	vOTU-087480
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_428462
Associated BioSample	SAMN05545014
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.57
Jumbo phage	No

Genome content
Genome length (bp)	22,025
GC content	58.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	92%
Average CDS length (bps)	452.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0148735_2	phrog_9	325.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0148735_2	UniRef90_UPI001245DB37	1049.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0148735_2	742738.HMPREF9460_00872	856.0	0	Phage Terminase	N/A
Pfam	UHGV-0148735_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0148735_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0148735_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0148735_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0148735_3	phrog_83	74.8	1.4e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0148735_3	UniRef90_UPI001F1C7CBA	280.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0148735_3	742738.HMPREF9460_00871	129.0	5.09e-36	phage terminase, small subunit	N/A
Pfam	UHGV-0148735_3	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0148735_3	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0148735_3	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0148735_3	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0148735_4	phrog_144	87.9	1.2e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148735_4	UniRef90_UPI001031C755	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0148735_4	742738.HMPREF9460_00869	182.0	0	HNH endonuclease	N/A
COG	UHGV-0148735_4	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0148735_4	PF01844,COG1403	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148735_5	UniRef90_UPI001F309B22	101.0	5.72e-27	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0148735_5	1226322.HMPREF1545_00110	59.7	0.0000000000347	Cysteine-rich KTR	N/A
Pfam	UHGV-0148735_5	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0148735_5	PF14205,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0148735_6	phrog_3584	174.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0148735_6	742738.HMPREF9460_00867	213.0	0	N/A	N/A
structural_annotation	UHGV-0148735_6	PF01446,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148735_7	NF041677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148735_9	PF19070	N/A	N/A	N/A	N/A
Pfam	UHGV-0148735_10	PF07191	N/A	N/A	zinc-ribbons	zinc-ribbons_6
eggNOG-mapper	UHGV-0148735_11	665956.HMPREF1032_03087	64.7	0.00000000017	N/A	N/A
eggNOG-mapper	UHGV-0148735_14	552398.HMPREF0866_03131	58.5	0.0000000000868	N/A	N/A
PHROG	UHGV-0148735_15	phrog_4433	138.8	0	N/A	unknown function
UniRef90	UHGV-0148735_15	UniRef90_UPI00045B9709	100.0	3.64e-23	collagen-like protein	N/A
eggNOG-mapper	UHGV-0148735_15	645991.Sgly_0315	172.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0148735_15	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0148735_17	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0148735_18	phrog_2562	99.8	3.9e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148735_18	UniRef90_A0A1C6D5S6	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-0148735_18	1235790.C805_00030	172.0	0	N/A	N/A
Pfam	UHGV-0148735_18	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0148735_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0148735_19	phrog_1029	120.0	1.9e-35	N/A	unknown function
UniRef90	UHGV-0148735_19	UniRef90_A0A0T8M1L9	56.6	0.0000000102	N/A	N/A
eggNOG-mapper	UHGV-0148735_19	1519439.JPJG01000059_gene1911	108.0	4.75e-28	N/A	N/A
PHROG	UHGV-0148735_20	phrog_1029	59.4	5.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0148735_20	552398.HMPREF0866_01625	91.3	1.26e-20	N/A	N/A
PHROG	UHGV-0148735_21	phrog_997	115.6	3.2e-34	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148735_21	UniRef90_R6MCS9	108.0	5.22e-28	N/A	N/A
eggNOG-mapper	UHGV-0148735_21	1203606.HMPREF1526_01889	136.0	7.80001e-40	replication terminator protein, phage associated	N/A
KOfam	UHGV-0148735_22	K06167	68.9	7.4e-20	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0148735_22	phrog_392	186.2	0	metal-dependent hydrolase	other
UniRef90	UHGV-0148735_22	UniRef90_UPI00195A5026	303.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0148735_22	1203606.HMPREF1526_00311	192.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0148735_22	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-0148735_22	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0148735_22	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0148735_22	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0148735_23	phrog_862	55.1	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0148735_23	1203606.HMPREF1526_00310	195.0	0	N/A	N/A
structural_annotation	UHGV-0148735_23	PF05037,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-0148735_24	K19171	75.9	1.1e-22	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0148735_24	phrog_77	216.9	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148735_24	UniRef90_UPI001959E3D8	649.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0148735_24	1203606.HMPREF1526_00309	402.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0148735_24	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0148735_24	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0148735_24	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148735_27	PF13560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148735_29	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148735_30	UniRef90_A0A845R4W0	112.0	5.84e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0148735_30	742738.HMPREF9460_02486	73.2	3.59e-16	N/A	N/A
structural_annotation	UHGV-0148735_30	PF13443,NF000090,COG1813	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148735_32	UniRef90_A0A1Y3RHT3	106.0	3.74e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0148735_32	1160721.RBI_I01471	55.8	0.00000000486	Cro/C1-type HTH DNA-binding domain	N/A
PHROG	UHGV-0148735_33	phrog_87	80.7	1.5e-23	metallo-protease	other
UniRef90	UHGV-0148735_33	UniRef90_A0A1Y3RG05	206.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0148735_33	1007096.BAGW01000011_gene2354	138.0	5.59e-40	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0148735_33	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0148735_33	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0148735_33	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0148735_34	K01174	164.0	0	nuc; micrococcal nuclease [EC:3.1.31.1]	N/A
PHROG	UHGV-0148735_34	phrog_20876	117.6	7.8e-35	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148735_34	UniRef90_A0A140L9P1	310.0	0	Thermonuclease	N/A
eggNOG-mapper	UHGV-0148735_34	1089548.KI783301_gene2029	207.0	0	Staphylococcal nuclease homologues	N/A
PADLOC	UHGV-0148735_34	shah_acc_0212	82.7	6e-24	SNc+LTD	CRISPR-CAS
Pfam	UHGV-0148735_34	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
Pfam	UHGV-0148735_34	PF00565	N/A	N/A	Staphylococcal nuclease homologue	SNase
COG	UHGV-0148735_34	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0148735_35	K14059	220.1	0	int; integrase	N/A
PHROG	UHGV-0148735_35	phrog_1	217.6	0	integrase	integration and excision
UniRef90	UHGV-0148735_35	UniRef90_UPI0018A8CCD8	552.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0148735_35	1408437.JNJN01000039_gene380	178.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0148735_35	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0148735_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0148735_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0148735_35	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0148735_36	1226322.HMPREF1545_00079	134.0	5.01e-39	N/A	N/A
PHROG	UHGV-0148735_38	phrog_20016	175.8	0	N/A	unknown function
UniRef90	UHGV-0148735_38	UniRef90_A0A285PT46	160.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0148735_38	1226322.HMPREF1545_00077	147.0	1.55544e-43	N/A	N/A
structural_annotation	UHGV-0148735_38	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0148735_39	phrog_16490	225.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0148735_39	658655.HMPREF0988_00917	187.0	0	N/A	N/A
PHROG	UHGV-0148735_40	phrog_22984	110.5	7.5e-33	N/A	unknown function
PHROG	UHGV-0148735_41	phrog_21718	118.1	6.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0148735_41	397290.C810_05210	74.3	0.0000000000000143	N/A	N/A
PHROG	UHGV-0148735_42	phrog_3754	103.2	2.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0148735_42	476272.RUMHYD_01764	181.0	0	N/A	N/A
UniRef90	UHGV-0148735_44	UniRef90_A0A1C6JAI6	75.1	4.99e-16	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0148735_44	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
COG	UHGV-0148735_45	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A