UHGV-0149339 (vOTU-075024)

Viral Genome: UHGV-0149339

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0149339
vOTU ID	vOTU-075024
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_415229
Associated BioSample	SAMN05414924
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.17
Jumbo phage	No

Genome content
Genome length (bp)	45,317
GC content	60.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	95%
Average CDS length (bps)	797.72
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0149339_1	K01269	470.5	0	yhfE; aminopeptidase [EC:3.4.11.-]	N/A
UniRef90	UHGV-0149339_1	UniRef90_A0A1C5ZLB2	652.0	0	Glutamyl aminopeptidase	N/A
eggNOG-mapper	UHGV-0149339_1	1121115.AXVN01000048_gene1292	539.0	0	M42 glutamyl aminopeptidase	N/A
Pfam	UHGV-0149339_1	PF05343	N/A	N/A	M42 glutamyl aminopeptidase	Peptidase_M42
COG	UHGV-0149339_1	COG1363	N/A	N/A	Putative aminopeptidase FrvX	N/A
structural_annotation	UHGV-0149339_1	PF05343,MF_00466,NF040822,COG1363	N/A	N/A	N/A	N/A
KOfam	UHGV-0149339_2	K03308	43.6	0.0000000000031	TC.NSS; neurotransmitter:Na+ symporter, NSS family	N/A
UniRef90	UHGV-0149339_2	UniRef90_A0A3C0WD08	93.6	3.52e-23	Sodium-dependent transporter (Fragment)	N/A
eggNOG-mapper	UHGV-0149339_2	411459.RUMOBE_02588	142.0	5.31e-40	Sodium:neurotransmitter symporter family	N/A
COG	UHGV-0149339_2	COG0733	N/A	N/A	Na+-dependent transporter, SNF family	N/A
PHROG	UHGV-0149339_3	phrog_1863	62.3	1.8e-18	N/A	unknown function
UniRef90	UHGV-0149339_3	UniRef90_UPI001F223E8B	68.6	0.000000000000232	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0149339_3	1226322.HMPREF1545_04027	68.2	0.0000000000000539	N/A	N/A
KOfam	UHGV-0149339_4	K01447	69.1	9e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0149339_4	phrog_1794	140.5	1.79997e-41	amidase	lysis
UniRef90	UHGV-0149339_4	UniRef90_R5AZE6	288.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0149339_4	1235793.C809_04312	203.0	0	Ami_2	N/A
Pfam	UHGV-0149339_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0149339_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0149339_4	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_5	phrog_22978	1211.5	0	N/A	unknown function
UniRef90	UHGV-0149339_5	UniRef90_A0A1Y4WLF7	796.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0149339_5	1519439.JPJG01000060_gene1905	405.0	0	N/A	N/A
Pfam	UHGV-0149339_5	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-0149339_6	1410650.JHWL01000003_gene2815	76.3	0.00000000000447	N/A	N/A
structural_annotation	UHGV-0149339_7	PF00629,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_9	phrog_38190	58.7	7.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0149339_9	762211.BSTEL_0610	64.7	0.00000000285	N/A	N/A
PHROG	UHGV-0149339_11	phrog_511	166.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0149339_11	1410650.JHWL01000003_gene2827	266.0	0	N/A	N/A
structural_annotation	UHGV-0149339_11	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_12	phrog_12105	129.9	1.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0149339_12	1226322.HMPREF1545_03850	86.3	4.85e-20	N/A	N/A
PHROG	UHGV-0149339_13	phrog_15239	46.1	0.0000000000008	N/A	unknown function
PHROG	UHGV-0149339_14	phrog_1357	217.6	0	major head protein	head and packaging
UniRef90	UHGV-0149339_14	UniRef90_A0A2V2CFL5	613.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0149339_14	1410650.JHWL01000003_gene2830	276.0	0	N/A	N/A
NCBIFam	UHGV-0149339_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0149339_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_15	phrog_13908	191.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0149339_15	1410650.JHWL01000003_gene2831	120.0	7.35e-29	N/A	N/A
KOfam	UHGV-0149339_16	K07584	44.1	0.0000000000037	N/A	N/A
PHROG	UHGV-0149339_16	phrog_4478	55.1	9.2e-16	peptidase	other
UniRef90	UHGV-0149339_16	UniRef90_UPI001A8F44BB	55.1	0.000000147	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0149339_16	521098.Aaci_1816	54.3	0.0000000492	Cysteine protease Prp	N/A
Pfam	UHGV-0149339_16	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0149339_16	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149339_16	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_17	phrog_156	298.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0149339_17	1410650.JHWL01000003_gene2833	521.0	0	N/A	N/A
structural_annotation	UHGV-0149339_17	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0149339_18	K06909	119.2	4.3e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0149339_18	phrog_979	119.6	4.6e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0149339_18	UniRef90_A0A810Q5R0	621.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0149339_18	1410650.JHWL01000003_gene2834	563.0	0	N/A	N/A
Pfam	UHGV-0149339_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0149339_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0149339_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_19	phrog_1206	41.5	0.0000000000048	terminase small subunit	head and packaging
PHROG	UHGV-0149339_21	phrog_25567	48.7	0.00000000000011	N/A	unknown function
UniRef90	UHGV-0149339_21	UniRef90_UPI00164AED9E	84.7	4.09e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0149339_21	1235798.C817_04600	73.9	0.00000000000000114	N/A	N/A
structural_annotation	UHGV-0149339_21	NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149339_22	UniRef90_A0A415ZLW7	92.0	7.06e-22	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0149339_22	1280664.AUIX01000040_gene2326	52.8	0.00000208	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0149339_22	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0149339_22	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0149339_24	K01160	56.4	8.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0149339_24	phrog_1682	78.0	1.4e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149339_24	UniRef90_A0A174WGH7	122.0	2.61e-33	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0149339_24	1235790.C805_00029	117.0	1.12e-32	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0149339_24	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0149339_24	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_25	phrog_474	118.4	1e-34	phosphofructokinase	other
UniRef90	UHGV-0149339_25	UniRef90_A0A7V6W4J9	116.0	3.18e-31	N/A	N/A
eggNOG-mapper	UHGV-0149339_25	665956.HMPREF1032_00639	113.0	7.77e-31	N/A	N/A
Pfam	UHGV-0149339_25	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0149339_25	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_27	phrog_599	48.6	0.0000000000002	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0149339_27	UniRef90_A0A845MWR1	55.1	0.0000000128	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0149339_27	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0149339_27	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0149339_27	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0149339_27	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_30	phrog_3392	115.2	6e-34	N/A	unknown function
UniRef90	UHGV-0149339_30	UniRef90_R7NB62	85.5	9.44e-18	Putative phage protein	N/A
eggNOG-mapper	UHGV-0149339_30	1217710.F969_00044	115.0	3.15e-28	N/A	N/A
UniRef90	UHGV-0149339_38	UniRef90_UPI001A9B9FB4	261.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0149339_38	1410632.JHWW01000006_gene695	200.0	0	N/A	N/A
Pfam	UHGV-0149339_38	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0149339_38	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_39	phrog_474	100.2	3e-29	phosphofructokinase	other
UniRef90	UHGV-0149339_39	UniRef90_A0A2V2EHL9	117.0	1.81e-31	N/A	N/A
eggNOG-mapper	UHGV-0149339_39	1203606.HMPREF1526_00237	101.0	8.55e-26	N/A	N/A
Pfam	UHGV-0149339_39	PF19905	N/A	N/A	N/A	DUF6378
PHROG	UHGV-0149339_40	phrog_36	51.2	0.000000000000028	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0149339_40	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_41	phrog_24386	124.3	8.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-0149339_41	1280679.ATVX01000028_gene1837	124.0	7.55e-35	UMP catabolic process	N/A
COG	UHGV-0149339_41	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
structural_annotation	UHGV-0149339_41	TIGR01689,COG0241	N/A	N/A	N/A	N/A
KOfam	UHGV-0149339_42	K14440	68.4	5.3e-37	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0149339_42	phrog_62	387.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149339_42	UniRef90_A0A3G9J1T4	534.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0149339_42	1296660.S5MA26_9CAUD	521.0	0	Type III restriction enzyme, res subunit	N/A
PADLOC	UHGV-0149339_42	DpdE_00012	87.4	1.6e-25	DpdE	DPD
Pfam	UHGV-0149339_42	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0149339_42	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
structural_annotation	UHGV-0149339_42	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0149339_45	K01449	49.8	0.00000000000005	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0149339_45	phrog_30550	183.8	0	N/A	unknown function
UniRef90	UHGV-0149339_45	UniRef90_A0A6N9PX25	153.0	1.76564e-43	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0149339_45	1519439.JPJG01000077_gene920	132.0	4.96e-37	Cell Wall Hydrolase	N/A
Pfam	UHGV-0149339_45	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
structural_annotation	UHGV-0149339_45	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
KOfam	UHGV-0149339_47	K02334	855.5	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0149339_47	phrog_17	404.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149339_47	UniRef90_A4J3S2	674.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0149339_47	349161.Dred_1191	674.0	0	DNA polymerase	N/A
Pfam	UHGV-0149339_47	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0149339_47	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0149339_47	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_48	phrog_112	174.3	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149339_48	UniRef90_UPI001C1238FC	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149339_48	1329516.JPST01000014_gene646	186.0	0	N/A	N/A
Pfam	UHGV-0149339_48	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0149339_48	PF10991,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0149339_49	phrog_69	288.0	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149339_49	UniRef90_UPI001A9ACF4A	297.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149339_49	591001.Acfer_1134	309.0	0	N/A	N/A
Pfam	UHGV-0149339_49	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0149339_49	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0149339_49	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149339_51	UniRef90_UPI001C8A0BEC	62.8	0.000000000041	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0149339_51	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0149339_51	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0149339_51	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
eggNOG-mapper	UHGV-0149339_54	573413.Spirs_1961	74.3	0.00000000000118	DNA RNA non-specific endonuclease	N/A
COG	UHGV-0149339_54	COG1864	N/A	N/A	DNA/RNA endonuclease G, NUC1	N/A