UHGV-0149390 (vOTU-046122)

Viral Genome: UHGV-0149390

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0149390
vOTU ID	vOTU-046122
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_441323
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.34
Jumbo phage	No

Genome content
Genome length (bp)	30,087
GC content	60.82%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	95%
Average CDS length (bps)	633.33
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0149390_2	phrog_3558	203.3	0	tail protein	tail
UniRef90	UHGV-0149390_2	UniRef90_A0A3D1VAY1	500.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0149390_2	877414.ATWA01000019_gene2050	139.0	2.77e-31	Phage minor structural protein	N/A
Pfam	UHGV-0149390_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0149390_2	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
NCBIFam	UHGV-0149390_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0149390_2	COG4926	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-0149390_3	411490.ANACAC_00709	58.5	0.000000427	phage tail	N/A
COG	UHGV-0149390_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0149390_3	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_4	phrog_9959	149.0	2.52234e-44	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0149390_4	411470.RUMGNA_02228	190.0	0	tape measure	N/A
Pfam	UHGV-0149390_4	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0149390_4	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0149390_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0149390_4	COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149390_5	1219626.HMPREF1639_07460	60.1	0.0000000000539	N/A	N/A
eggNOG-mapper	UHGV-0149390_6	411468.CLOSCI_00542	50.4	0.00000127	N/A	N/A
structural_annotation	UHGV-0149390_6	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_7	phrog_2175	84.4	1.5e-24	protein with Ig domain	other
eggNOG-mapper	UHGV-0149390_7	1219626.HMPREF1639_07450	211.0	0	N/A	N/A
structural_annotation	UHGV-0149390_7	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149390_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_9	phrog_5	45.0	0.000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-0149390_9	UniRef90_UPI00156FE9DA	104.0	1.99e-26	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0149390_9	482234.SCAZ3_03240	72.8	0.00000000000000933	N/A	N/A
structural_annotation	UHGV-0149390_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_10	phrog_1951	69.6	3.6e-20	head-tail adaptor	connector
UniRef90	UHGV-0149390_10	UniRef90_A0A3D1VD59	175.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0149390_10	573061.Clocel_2434	65.5	0.000000000000931	head-tail adaptor	N/A
COG	UHGV-0149390_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0149390_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_11	phrog_2550	69.1	4.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0149390_11	1226322.HMPREF1545_00117	63.9	0.0000000000042	N/A	N/A
structural_annotation	UHGV-0149390_11	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_12	phrog_10	179.0	0	major head protein	head and packaging
UniRef90	UHGV-0149390_12	UniRef90_A0A3D1VAZ0	702.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0149390_12	396034.A6XMJ6_9CAUD	382.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0149390_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0149390_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0149390_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_13	K06904	144.6	9.59889e-43	N/A	N/A
PHROG	UHGV-0149390_13	phrog_80	164.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0149390_13	UniRef90_A0A3D1VA27	365.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0149390_13	1235798.C817_04584	225.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0149390_13	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0149390_13	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0149390_13	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0149390_13	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_14	phrog_12	160.0	0	portal protein	head and packaging
UniRef90	UHGV-0149390_14	UniRef90_A0A3D1VH02	730.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0149390_14	1121423.JONT01000042_gene1421	417.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0149390_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0149390_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0149390_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0149390_14	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_15	phrog_9	287.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0149390_15	UniRef90_A0A3D1VAR5	1176.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0149390_15	1226322.HMPREF1545_00113	786.0	0	Phage Terminase	N/A
Pfam	UHGV-0149390_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0149390_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0149390_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0149390_15	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_16	phrog_361	76.9	3.1e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0149390_16	UniRef90_UPI0016236BF7	78.6	2.62e-16	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0149390_16	596315.HMPREF0634_0388	77.4	1.24e-16	Phage terminase, small subunit	N/A
Pfam	UHGV-0149390_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0149390_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_17	K07451	48.5	0.00000000000018	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0149390_17	phrog_119	78.8	6.7e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149390_17	UniRef90_A0A3D1VCB5	176.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0149390_17	1121423.JONT01000065_gene1369	106.0	1.98e-28	HNH nucleases	N/A
Pfam	UHGV-0149390_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0149390_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0149390_18	UniRef90_UPI001D014F8E	82.0	2.44e-19	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0149390_18	1226322.HMPREF1545_00110	61.6	0.00000000000626	Cysteine-rich KTR	N/A
Pfam	UHGV-0149390_18	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0149390_18	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_19	phrog_3584	167.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0149390_19	1203606.HMPREF1526_00985	194.0	0	N/A	N/A
structural_annotation	UHGV-0149390_19	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_24	phrog_2245	105.2	5.9e-31	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0149390_24	UniRef90_A0A4U9RLZ8	89.7	1.54e-21	N/A	N/A
eggNOG-mapper	UHGV-0149390_24	293826.Amet_2596	99.0	3.88e-25	N/A	N/A
structural_annotation	UHGV-0149390_24	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_26	phrog_5781	74.6	1.1e-21	N/A	unknown function
UniRef90	UHGV-0149390_26	UniRef90_A0A413FXK8	108.0	2.2e-27	N/A	N/A
eggNOG-mapper	UHGV-0149390_26	1397284.AYMN01000083_gene2419	82.4	4.06e-18	N/A	N/A
Pfam	UHGV-0149390_26	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0149390_26	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0149390_26	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_27	K03497	81.6	1.2e-23	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0149390_27	phrog_27290	203.8	0	N/A	unknown function
UniRef90	UHGV-0149390_27	UniRef90_A0A3D1VH09	719.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0149390_27	693746.OBV_19860	163.0	2.26029e-42	ParB-like nuclease domain	N/A
Pfam	UHGV-0149390_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0149390_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0149390_27	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_28	K03496	200.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0149390_28	phrog_164	179.1	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149390_28	UniRef90_A0A3D1VAU9	461.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0149390_28	742738.HMPREF9460_00854	202.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0149390_28	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0149390_28	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0149390_28	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_30	K02314	258.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0149390_30	phrog_19	247.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149390_30	UniRef90_A0A3D1V9Y4	797.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0149390_30	1007096.BAGW01000033_gene1616	257.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0149390_30	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0149390_30	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0149390_30	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0149390_30	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_31	phrog_270	119.0	5.4e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149390_31	UniRef90_UPI001F33ADD3	213.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0149390_31	1297617.JPJD01000031_gene2014	144.0	1.13e-38	COG NOG34358 non supervised orthologous group	N/A
Pfam	UHGV-0149390_31	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0149390_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0149390_31	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149390_32	UniRef90_A0A3D1V9Y1	162.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0149390_32	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0149390_32	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0149390_32	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_33	phrog_6499	117.7	5.1e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0149390_33	UniRef90_A0A3D1VA62	305.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0149390_33	1415774.U728_1274	119.0	1.73e-32	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0149390_33	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0149390_33	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0149390_33	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_35	K07729	49.9	0.000000000000074	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0149390_35	phrog_4	44.0	0.0000000000049	transcriptional repressor	transcription regulation
UniRef90	UHGV-0149390_35	UniRef90_A0A3D1VD81	116.0	4.54e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0149390_35	938278.CAJO01000073_gene1356	58.5	0.0000000029	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0149390_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0149390_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0149390_35	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_36	K01356	159.2	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0149390_36	phrog_4	141.6	6.69961e-42	transcriptional repressor	transcription regulation
UniRef90	UHGV-0149390_36	UniRef90_A0A3D1VDF3	382.0	0	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0149390_36	428125.CLOLEP_01832	231.0	0	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0149390_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0149390_36	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0149390_36	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0149390_36	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0149390_37	K02342	118.9	5e-35	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0149390_37	phrog_192	100.4	1.8e-29	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149390_37	UniRef90_A0A3D1VB11	636.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0149390_37	1408303.JNJJ01000108_gene69	202.0	0	3' exoribonuclease, RNase T-like	N/A
PADLOC	UHGV-0149390_37	cd06127	82.5	1.2e-23	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0149390_37	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0149390_37	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0149390_37	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0149390_37	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149390_38	1232453.BAIF02000097_gene2773	57.8	0.000000221	EXOIII	N/A
COG	UHGV-0149390_38	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
KOfam	UHGV-0149390_39	K14059	205.2	0	int; integrase	N/A
PHROG	UHGV-0149390_39	phrog_1	164.8	0	integrase	integration and excision
UniRef90	UHGV-0149390_39	UniRef90_A0A3D1VH24	621.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0149390_39	1297617.JPJD01000022_gene1664	285.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0149390_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0149390_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0149390_39	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_40	phrog_1129	60.8	1.8e-17	holin	lysis
UniRef90	UHGV-0149390_40	UniRef90_A0A8J6J3M3	102.0	1.38e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0149390_40	742740.HMPREF9474_03522	96.3	4.57e-25	N/A	N/A
Pfam	UHGV-0149390_40	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0149390_40	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_41	phrog_4105	77.4	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0149390_41	592026.GCWU0000282_003290	82.8	3.37e-19	N/A	N/A
KOfam	UHGV-0149390_42	K01447	70.1	4.3e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0149390_42	phrog_1794	142.8	3.39955e-42	amidase	lysis
UniRef90	UHGV-0149390_42	UniRef90_R5AZE6	272.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0149390_42	1235800.C819_03946	214.0	0	Ami_2	N/A
Pfam	UHGV-0149390_42	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0149390_42	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0149390_42	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0149390_42	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0149390_43	phrog_30034	107.3	2.1e-31	N/A	unknown function
UniRef90	UHGV-0149390_43	UniRef90_R6RWR8	135.0	2.72e-37	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0149390_43	411460.RUMTOR_02099	120.0	4.5e-32	N/A	N/A
Pfam	UHGV-0149390_43	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0149390_43	PF14600	N/A	N/A	N/A	N/A
Pfam	UHGV-0149390_45	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0149390_45	PF13306	N/A	N/A	N/A	N/A