UHGV-0151878 (vOTU-027502)

Viral Genome: UHGV-0151878

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0151878
vOTU ID	vOTU-027502
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_453553
Associated BioSample	SAMN05971692
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.87 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.41
Jumbo phage	No

Genome content
Genome length (bp)	28,043
GC content	52.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	89%
Average CDS length (bps)	611.93
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0151878_1	K03695	224.2	0	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB	N/A
PHROG	UHGV-0151878_1	phrog_4871	200.4	0	ATP-dependent protease	other
UniRef90	UHGV-0151878_1	UniRef90_R5EJD1	243.0	0	ATP-dependent chaperone protein ClpB	N/A
eggNOG-mapper	UHGV-0151878_1	657322.FPR_14510	244.0	0	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	N/A
Pfam	UHGV-0151878_1	PF07724	N/A	N/A	AAA domain (Cdc48 subfamily)	AAA_2
Pfam	UHGV-0151878_1	PF10431	N/A	N/A	C-terminal, D2-small domain, of ClpB protein	ClpB_D2-small
COG	UHGV-0151878_1	COG0542	N/A	N/A	ATP-dependent Clp protease, ATP-binding subunit ClpA	N/A
KOfam	UHGV-0151878_2	K14059	119.6	1.5e-35	int; integrase	N/A
PHROG	UHGV-0151878_2	phrog_1	134.0	1.4e-39	integrase	integration and excision
UniRef90	UHGV-0151878_2	UniRef90_A0A3D3Y5E0	259.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0151878_2	411471.SUBVAR_05137	132.0	7.98e-33	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0151878_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0151878_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0151878_2	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0151878_3	K07504	442.9	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-0151878_3	phrog_4225	464.5	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151878_3	UniRef90_UPI001BB478CB	530.0	0	type I restriction endonuclease	N/A
eggNOG-mapper	UHGV-0151878_3	742738.HMPREF9460_04035	514.0	0	Type I restriction enzyme R protein N terminus (HSDR_N)	N/A
Pfam	UHGV-0151878_3	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-0151878_3	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0151878_3	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
KOfam	UHGV-0151878_4	K18830	71.5	1.8e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0151878_4	phrog_8	55.7	0.0000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0151878_4	UniRef90_R6HTL1	228.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0151878_4	1235797.C816_03553	122.0	1.45e-33	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0151878_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0151878_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0151878_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0151878_7	PF16857	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_10	phrog_757	245.2	0	DNA methyltransferase	other
UniRef90	UHGV-0151878_10	UniRef90_A0A6L9HEX6	313.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0151878_10	485918.Cpin_3834	277.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0151878_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0151878_10	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_13	phrog_253	117.6	1e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151878_13	UniRef90_UPI00051BDF29	122.0	3.29e-32	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0151878_13	397290.C810_05162	125.0	3.14e-34	Siphovirus Gp157	N/A
Pfam	UHGV-0151878_13	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0151878_13	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_15	phrog_2872	214.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151878_15	UniRef90_UPI000C080C89	284.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0151878_15	1345695.CLSA_c30180	266.0	0	AAA domain	N/A
Pfam	UHGV-0151878_15	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0151878_15	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0151878_16	568816.Acin_1852	74.3	0.0000000000000442	N/A	N/A
structural_annotation	UHGV-0151878_16	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_17	phrog_8841	469.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151878_17	UniRef90_A0A173Y540	659.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0151878_17	742738.HMPREF9460_02495	658.0	0	N/A	N/A
Pfam	UHGV-0151878_17	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0151878_17	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0151878_17	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0151878_17	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0151878_18	K17677	395.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0151878_18	phrog_16	241.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151878_18	UniRef90_A0A2U1BEG6	710.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0151878_18	742738.HMPREF9460_02499	694.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0151878_18	mREase_IV_00005	113.4	8.5e-34	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0151878_18	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0151878_18	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0151878_18	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0151878_18	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_19	phrog_3253	45.3	0.00000000000069	N/A	unknown function
UniRef90	UHGV-0151878_19	UniRef90_UPI0011773349	60.5	0.0000000000574	resolvase	N/A
PHROG	UHGV-0151878_20	phrog_824	121.9	3.2e-36	N/A	unknown function
UniRef90	UHGV-0151878_20	UniRef90_A0A3D0M2W9	145.0	6.20775e-43	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0151878_20	742738.HMPREF9460_02501	130.0	8.66e-38	VRR_NUC	N/A
Pfam	UHGV-0151878_20	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0151878_20	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_22	phrog_6568	84.1	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0151878_23	693746.OBV_25230	164.0	0	N/A	N/A
structural_annotation	UHGV-0151878_23	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0151878_24	K00571	148.0	9.24857e-44	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0151878_24	phrog_498	80.2	2.9e-23	DNA methyltransferase	other
UniRef90	UHGV-0151878_24	UniRef90_A0A6L9H9Q7	299.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0151878_24	1321782.HMPREF1986_02265	271.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-0151878_24	MTase_II_00107	152.6	4.2039e-45	Type II methyltransferase	RM
Pfam	UHGV-0151878_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0151878_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0151878_24	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0151878_25	K23779	43.5	0.0000000000072	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0151878_25	UniRef90_A0A4Z0Y8T7	77.4	1.95e-17	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0151878_25	1415774.U728_2928	59.3	0.0000000000392	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0151878_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0151878_25	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_28	phrog_119	76.2	4.6e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151878_28	UniRef90_A0A1C6FFC2	163.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0151878_28	1415774.U728_1257	83.6	2.38e-19	HNH nucleases	N/A
COG	UHGV-0151878_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0151878_29	phrog_5110	85.2	5.5e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0151878_29	UniRef90_A0A139CWZ4	63.9	0.0000000000753	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0151878_29	1265845.PWEIH_00610	55.8	0.0000000222	Phage terminase, small subunit	N/A
Pfam	UHGV-0151878_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0151878_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_30	phrog_9	261.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0151878_30	UniRef90_A0A1C6FFC9	884.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0151878_30	1235792.C808_00083	641.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0151878_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0151878_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0151878_30	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_31	phrog_12	126.3	2e-37	portal protein	head and packaging
UniRef90	UHGV-0151878_31	UniRef90_A0A328UFT7	516.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0151878_31	349161.Dred_2606	311.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0151878_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0151878_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0151878_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0151878_31	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0151878_32	K01358	123.1	3.6e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0151878_32	phrog_94	223.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0151878_32	UniRef90_A0A1C6FFN6	317.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0151878_32	349161.Dred_2605	279.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0151878_32	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0151878_32	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0151878_32	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_33	phrog_10	135.8	4.9e-40	major head protein	head and packaging
UniRef90	UHGV-0151878_33	UniRef90_UPI0018757887	605.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0151878_33	1235792.C808_00086	423.0	0	Phage capsid family	N/A
Pfam	UHGV-0151878_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0151878_33	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0151878_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0151878_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0151878_33	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_34	phrog_749	72.4	5.3e-21	N/A	unknown function
UniRef90	UHGV-0151878_34	UniRef90_A0A7V7BBS9	68.6	0.00000000000062	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0151878_34	1235792.C808_00087	71.2	0.0000000000000104	N/A	N/A
PHROG	UHGV-0151878_35	phrog_19734	120.5	1e-35	N/A	unknown function
UniRef90	UHGV-0151878_35	UniRef90_A0A6I7GNS7	141.0	9.18005e-41	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0151878_35	349161.Dred_2602	81.3	3.55e-18	N/A	N/A
structural_annotation	UHGV-0151878_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0151878_36	1235798.C817_04588	95.9	2.59e-24	N/A	N/A
structural_annotation	UHGV-0151878_36	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_37	phrog_5	52.0	0.000000000000019	tail completion or Neck1 protein	connector
UniRef90	UHGV-0151878_37	UniRef90_R6UNR2	120.0	7.34e-32	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0151878_37	1235798.C817_04589	133.0	1.27e-37	N/A	N/A
structural_annotation	UHGV-0151878_37	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0151878_38	phrog_88	89.9	3e-26	major tail protein	tail
UniRef90	UHGV-0151878_38	UniRef90_A0A414B835	92.4	9.77e-20	Phage tail protein	N/A
NCBIFam	UHGV-0151878_38	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0151878_38	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0151878_40	K16308	45.7	0.00000000000013	CIT; citron Rho-interacting kinase [EC:2.7.11.1]	N/A
PHROG	UHGV-0151878_40	phrog_10613	75.1	1.4e-21	tail length tape measure protein	tail
UniRef90	UHGV-0151878_40	UniRef90_A0A1I5SCZ6	82.8	0.00000000000303	Peptidase family M23	N/A
eggNOG-mapper	UHGV-0151878_40	1123314.AUIO01000016_gene849	213.0	0	Phage tail tape measure protein	N/A
COG	UHGV-0151878_40	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0151878_40	PF20155	N/A	N/A	N/A	N/A