UHGV-0152136 (vOTU-010560)

Viral Genome: UHGV-0152136

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0152136
vOTU ID	vOTU-010560
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_458409
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.84
Jumbo phage	No

Genome content
Genome length (bp)	43,200
GC content	38.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	86%
Average CDS length (bps)	794.23
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0152136_1	1035196.HMPREF9998_00748	50.4	0.0000000676	helix_turn_helix, Arsenical Resistance Operon Repressor	N/A
COG	UHGV-0152136_1	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
KOfam	UHGV-0152136_3	K01448	70.0	3.5e-20	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0152136_3	phrog_435	145.8	3.9937e-43	endolysin	lysis
UniRef90	UHGV-0152136_3	UniRef90_A0A374APK8	495.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0152136_3	411490.ANACAC_00597	236.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0152136_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0152136_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0152136_3	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_4	phrog_199	63.1	3.9e-18	holin	lysis
UniRef90	UHGV-0152136_4	UniRef90_A0A1Q2CAY6	288.0	0	Holin	N/A
eggNOG-mapper	UHGV-0152136_4	742723.HMPREF9477_00889	225.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0152136_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0152136_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0152136_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0152136_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_5	phrog_2566	75.9	3.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0152136_5	1232453.BAIF02000058_gene1639	61.6	0.0000000000138	N/A	N/A
PHROG	UHGV-0152136_6	phrog_16267	187.7	0	N/A	unknown function
UniRef90	UHGV-0152136_6	UniRef90_A0A417V835	2337.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0152136_6	1294142.CINTURNW_1706	201.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0152136_6	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0152136_6	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0152136_7	phrog_1401	55.4	0.0000000000000012	N/A	unknown function
UniRef90	UHGV-0152136_7	UniRef90_UPI001A9A8A65	56.2	0.000000159	N/A	N/A
structural_annotation	UHGV-0152136_7	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_8	phrog_1194	79.4	4.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0152136_8	33035.JPJF01000093_gene2242	130.0	7.61e-38	N/A	N/A
structural_annotation	UHGV-0152136_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_9	phrog_1535	259.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0152136_9	UniRef90_A0A1C5PIN9	516.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0152136_9	742740.HMPREF9474_03514	409.0	0	tape measure	N/A
COG	UHGV-0152136_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0152136_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_10	phrog_8355	100.6	6.1e-30	N/A	unknown function
UniRef90	UHGV-0152136_10	UniRef90_UPI001D0684E3	125.0	1.09e-35	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0152136_10	33035.JPJF01000093_gene2244	94.0	2.6e-24	N/A	N/A
PHROG	UHGV-0152136_11	phrog_8300	92.0	5.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0152136_11	33035.JPJF01000093_gene2245	102.0	6.05e-27	N/A	N/A
structural_annotation	UHGV-0152136_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_12	phrog_820	125.0	4.3e-37	major tail protein	tail
eggNOG-mapper	UHGV-0152136_12	1282664.H354_06691	202.0	0	N/A	N/A
structural_annotation	UHGV-0152136_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_13	phrog_2595	105.0	5.8e-31	head-tail connector protein	connector
UniRef90	UHGV-0152136_13	UniRef90_UPI001D0627B3	203.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0152136_13	679192.HMPREF9013_1297	140.0	2.95996e-41	N/A	N/A
Pfam	UHGV-0152136_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0152136_13	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_14	phrog_556	57.2	3.1e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0152136_14	742740.HMPREF9474_03509	164.0	0	N/A	N/A
PHROG	UHGV-0152136_15	phrog_8710	140.3	5.29971e-42	N/A	unknown function
eggNOG-mapper	UHGV-0152136_15	742740.HMPREF9474_03508	139.0	3.33005e-41	N/A	N/A
structural_annotation	UHGV-0152136_15	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_16	phrog_541	68.8	7.9e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0152136_16	742740.HMPREF9474_03507	132.0	2.83e-38	N/A	N/A
PHROG	UHGV-0152136_17	phrog_422	270.8	0	major head protein	head and packaging
UniRef90	UHGV-0152136_17	UniRef90_A0A417V845	628.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0152136_17	663278.Ethha_1589	413.0	0	N/A	N/A
structural_annotation	UHGV-0152136_17	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_18	phrog_2303	145.5	3.89561e-43	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0152136_18	742740.HMPREF9474_03504	177.0	0	N/A	N/A
structural_annotation	UHGV-0152136_19	PF20873	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_21	phrog_581	259.5	0	minor head protein	head and packaging
UniRef90	UHGV-0152136_21	UniRef90_UPI0015715021	1066.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0152136_21	33035.JPJF01000093_gene2255	432.0	0	N/A	N/A
Pfam	UHGV-0152136_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0152136_21	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0152136_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_22	phrog_25639	68.4	8.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0152136_22	742740.HMPREF9474_03502	58.5	0.000000000172	N/A	N/A
PHROG	UHGV-0152136_23	phrog_533	280.0	0	portal protein	head and packaging
UniRef90	UHGV-0152136_23	UniRef90_A0A417V837	1048.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0152136_23	33035.JPJF01000093_gene2257	592.0	0	N/A	N/A
structural_annotation	UHGV-0152136_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0152136_24	K06909	104.4	1.5e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0152136_24	phrog_2	71.9	1.4e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0152136_24	UniRef90_A0A417V8L6	919.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0152136_24	1304866.K413DRAFT_0811	742.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0152136_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0152136_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0152136_25	K07474	131.4	1.3e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0152136_25	phrog_51	146.6	1.4013e-43	terminase small subunit	head and packaging
UniRef90	UHGV-0152136_25	UniRef90_A0A417V811	315.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0152136_25	1298920.KI911353_gene4857	213.0	0	Terminase small subunit	N/A
Pfam	UHGV-0152136_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0152136_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0152136_25	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0152136_27	1220589.CD32_01770	167.0	0	N/A	N/A
AcrCatalog	UHGV-0152136_27	cluster_38765	177.0	0	NA	N/A
structural_annotation	UHGV-0152136_27	PF15931,NF001462,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_28	phrog_36	52.4	0.000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0152136_28	UniRef90_A0A1Q2C402	216.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0152136_28	33035.JPJF01000107_gene434	117.0	8.8e-32	Sigma-70, region 4	N/A
Pfam	UHGV-0152136_28	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0152136_28	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0152136_28	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0152136_29	MF_00773,NF011481,COG2888	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_30	phrog_31515	137.8	1.79997e-41	N/A	unknown function
structural_annotation	UHGV-0152136_30	PF07338,NF033776	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_31	phrog_17690	177.8	0	N/A	unknown function
UniRef90	UHGV-0152136_31	UniRef90_A0A6L5XWF4	119.0	4.19e-32	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0152136_31	476272.RUMHYD_03925	103.0	1.22e-26	N/A	N/A
KOfam	UHGV-0152136_32	K14440	115.9	1.6e-34	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0152136_32	phrog_62	407.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152136_32	UniRef90_A0A173S305	916.0	0	DNA methylase	N/A
eggNOG-mapper	UHGV-0152136_32	469618.FVAG_01298	594.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0152136_32	DpdE_00010	76.6	3.7e-22	DpdE	DPD
Pfam	UHGV-0152136_32	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0152136_32	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0152136_32	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0152136_32	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_33	phrog_93	73.4	3.3e-21	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152136_33	UniRef90_A0A173S1G6	221.0	0	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-0152136_33	86416.Clopa_0565	107.0	7.78e-29	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0152136_33	PF18741	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_34	phrog_256	1057.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152136_34	UniRef90_A0A173S1C5	1626.0	0	Predicted P-loop ATPase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0152136_34	1321778.HMPREF1982_02544	938.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0152136_34	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0152136_34	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0152136_34	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0152136_35	K02334	895.1	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0152136_35	phrog_17	410.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152136_35	UniRef90_A0A173S361	1332.0	0	DNA polymerase I, thermostable	N/A
eggNOG-mapper	UHGV-0152136_35	86416.Clopa_0561	750.0	0	DNA polymerase	N/A
Pfam	UHGV-0152136_35	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0152136_35	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0152136_35	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_36	phrog_112	216.1	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152136_36	UniRef90_UPI0009F98B20	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-0152136_36	1449126.JQKL01000006_gene839	224.0	0	N/A	N/A
Pfam	UHGV-0152136_36	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0152136_36	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_37	phrog_69	333.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152136_37	UniRef90_R7MZ29	394.0	0	N/A	N/A
eggNOG-mapper	UHGV-0152136_37	469618.FVAG_01292	370.0	0	N/A	N/A
Pfam	UHGV-0152136_37	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0152136_37	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0152136_37	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0152136_38	phrog_18562	165.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0152136_38	717606.PaecuDRAFT_3099	71.6	0.000000000000178	N/A	N/A
KOfam	UHGV-0152136_42	K22299	49.2	0.00000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0152136_42	phrog_8	46.2	0.00000000000097	transcriptional regulator	transcription regulation
UniRef90	UHGV-0152136_42	UniRef90_UPI001570EF62	160.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0152136_42	411490.ANACAC_00814	110.0	3.29e-31	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0152136_42	retron_type_VI_hth_cluster2_1	43.0	0.000000000015	N/A	Retron
Pfam	UHGV-0152136_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0152136_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0152136_43	K01356	143.1	3.59994e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0152136_43	phrog_4	128.6	5.7e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0152136_43	UniRef90_UPI00156D79C9	390.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0152136_43	411490.ANACAC_00815	338.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0152136_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0152136_43	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0152136_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0152136_43	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0152136_44	UniRef90_UPI00157087A4	392.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0152136_44	1449050.JNLE01000003_gene3872	136.0	6.07e-37	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0152136_44	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-0152136_44	PF02368,NF005261,COG3121	N/A	N/A	N/A	N/A
UniRef90	UHGV-0152136_45	UniRef90_A0A173RTG3	459.0	0	Bacterial Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-0152136_45	1449050.JNLE01000003_gene3872	127.0	1.46e-33	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0152136_45	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-0152136_45	PF02368,NF005261,COG3121	N/A	N/A	N/A	N/A
KOfam	UHGV-0152136_46	K14059	107.9	1.7e-31	int; integrase	N/A
PHROG	UHGV-0152136_46	phrog_1	144.3	1.19951e-42	integrase	integration and excision
UniRef90	UHGV-0152136_46	UniRef90_A0A374AMT2	829.0	0	Zinc-ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0152136_46	428125.CLOLEP_01345	499.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0152136_46	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0152136_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0152136_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0152136_46	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0152136_47	UniRef90_A0A843FHH4	62.0	0.00000000000396	GGGtGRT protein	N/A
eggNOG-mapper	UHGV-0152136_47	1235790.C805_01619	75.1	9.86e-16	Cytoplasmic, score 8.87	N/A
Pfam	UHGV-0152136_47	PF14057	N/A	N/A	GGGtGRT protein	GGGtGRT