UHGV-0154737 (vOTU-046196)

Viral Genome: UHGV-0154737

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0154737
vOTU ID	vOTU-046196
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_471143
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.975
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.81
Jumbo phage	No

Genome content
Genome length (bp)	39,650
GC content	37.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	88%
Average CDS length (bps)	522.49
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0154737_1	K14060	51.3	0.000000000000025	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0154737_1	phrog_125	54.2	0.0000000000000033	DNA invertase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0154737_1	1219080.VEZ01S_05_00370	48.5	0.00000602	Resolvase, N terminal domain	N/A
Pfam	UHGV-0154737_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0154737_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-0154737_6	phrog_757	190.7	0	DNA methyltransferase	other
UniRef90	UHGV-0154737_6	UniRef90_A0A355YQL4	301.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0154737_6	397290.C810_01487	291.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0154737_6	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0154737_6	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_7	phrog_3136	114.9	2.7e-34	N/A	unknown function
UniRef90	UHGV-0154737_7	UniRef90_UPI001C02A61B	128.0	1.62e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0154737_7	97139.C824_00742	65.9	0.0000000000494	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0154737_7	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0154737_7	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0154737_8	K00390	84.5	9e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0154737_8	phrog_424	149.2	1.82169e-44	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0154737_8	UniRef90_A0A3D4KZM8	382.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0154737_8	1280696.ATVY01000096_gene1971	332.0	0	N/A	N/A
Pfam	UHGV-0154737_8	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0154737_8	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0154737_8	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0154737_10	K00558	44.5	0.0000000000016	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0154737_10	phrog_17284	68.5	2.2e-20	N/A	unknown function
UniRef90	UHGV-0154737_10	UniRef90_A0A350S1S8	94.0	2.14e-22	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0154737_10	1121871.AUAT01000002_gene1371	89.4	9.47e-20	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0154737_10	oMTase_00023	77.6	3.6e-27	orphan methyltransferase	RM
Pfam	UHGV-0154737_10	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0154737_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0154737_11	K00558	143.6	1.19951e-42	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0154737_11	phrog_116	141.7	3.50044e-42	DNA methyltransferase	other
UniRef90	UHGV-0154737_11	UniRef90_A0A412KF70	303.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0154737_11	397290.C810_05213	290.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0154737_11	MTase_II_00058	147.7	1.59748e-43	Type II methyltransferase	RM
Pfam	UHGV-0154737_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0154737_11	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0154737_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0154737_14	phrog_8684	80.4	2.3e-23	N/A	unknown function
UniRef90	UHGV-0154737_14	UniRef90_A0A412ULY6	147.0	6.41795e-43	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0154737_14	40522.A8ASP1_BPA50	64.7	0.0000000000276	YopX protein	N/A
Pfam	UHGV-0154737_14	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-0154737_16	phrog_10469	92.7	1.7e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154737_16	UniRef90_UPI0008D987E5	183.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0154737_16	1122172.KB890259_gene1441	172.0	0	N/A	N/A
Pfam	UHGV-0154737_16	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0154737_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0154737_16	NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0154737_17	K03111	128.4	9.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0154737_17	phrog_44	128.1	7.1e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154737_17	UniRef90_A0A1V5ZUU4	125.0	2.26e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0154737_17	748224.HMPREF9436_03359	115.0	7.66e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0154737_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0154737_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0154737_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0154737_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0154737_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_18	phrog_3490	154.3	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154737_18	UniRef90_A0A414SKQ9	127.0	3.31e-34	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0154737_18	1163671.JAGI01000002_gene1297	124.0	1.38e-33	ERCC4 domain	N/A
Pfam	UHGV-0154737_18	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0154737_18	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_20	phrog_561	116.2	2.1e-34	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154737_20	UniRef90_UPI001D07CFE1	151.0	2.76e-41	recombinase RecT	N/A
eggNOG-mapper	UHGV-0154737_20	563192.HMPREF0179_00147	145.0	1.74e-39	N/A	N/A
structural_annotation	UHGV-0154737_20	NF007351	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0154737_21	563031.HMPREF0666_01114	58.5	0.00000015	N/A	N/A
UniRef90	UHGV-0154737_22	UniRef90_A0A098GES5	93.6	6.45e-23	Putative phage associated protein	N/A
structural_annotation	UHGV-0154737_22	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_23	phrog_298	83.9	1.1e-24	exonuclease	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0154737_23	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
Pfam	UHGV-0154737_27	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0154737_27	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
Pfam	UHGV-0154737_28	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
eggNOG-mapper	UHGV-0154737_31	658655.HMPREF0988_00916	140.0	1.90002e-41	N/A	N/A
PHROG	UHGV-0154737_32	phrog_16490	69.1	9.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0154737_32	641112.ACOK01000103_gene525	100.0	2.57e-23	N/A	N/A
PHROG	UHGV-0154737_34	phrog_21718	44.6	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0154737_34	1235790.C805_00058	54.3	0.00000042	N/A	N/A
Pfam	UHGV-0154737_36	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0154737_36	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0154737_37	cluster_17974	42.4	0.0000000287	NA	N/A
PHROG	UHGV-0154737_39	phrog_443	57.9	2.7e-16	holin	lysis
UniRef90	UHGV-0154737_39	UniRef90_A0A1M6RHE6	90.1	4.15e-22	Holin, r1t family	N/A
eggNOG-mapper	UHGV-0154737_39	1469948.JPNB01000002_gene3855	82.8	5.9e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0154737_39	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
KOfam	UHGV-0154737_40	K01447	103.5	2.9e-30	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0154737_40	phrog_3088	231.5	0	amidase	lysis
UniRef90	UHGV-0154737_40	UniRef90_A0A8F2F1D1	259.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0154737_40	428125.CLOLEP_01782	251.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0154737_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0154737_40	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0154737_40	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_44	phrog_24267	112.9	3.1e-33	N/A	unknown function
UniRef90	UHGV-0154737_44	UniRef90_R5LPM8	115.0	2.08e-29	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-0154737_44	1123302.KB904167_gene530	112.0	4.67e-26	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0154737_44	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0154737_44	COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154737_45	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_46	phrog_1194	54.8	0.0000000000000014	N/A	unknown function
UniRef90	UHGV-0154737_46	UniRef90_A0A8D9PDT1	87.0	2.75e-19	YolD-like protein	N/A
eggNOG-mapper	UHGV-0154737_46	483218.BACPEC_01144	96.3	1.18e-23	N/A	N/A
Pfam	UHGV-0154737_46	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0154737_46	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_47	phrog_1535	88.8	2.4e-29	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0154737_47	1121333.JMLH01000047_gene1009	97.8	4.02e-18	N/A	N/A
eggNOG-mapper	UHGV-0154737_50	1211844.CBLM010000023_gene989	149.0	7.9874e-44	N/A	N/A
structural_annotation	UHGV-0154737_50	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154737_51	PF06141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154737_53	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_55	phrog_212	254.4	0	major head protein	head and packaging
UniRef90	UHGV-0154737_55	UniRef90_A0A354MR33	449.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0154737_55	1232449.BAHV02000010_gene2714	363.0	0	N/A	N/A
structural_annotation	UHGV-0154737_55	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_56	phrog_314	80.5	1.8e-23	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154737_56	UniRef90_A0A3R6RDR5	135.0	2.16e-36	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0154737_56	1139219.I569_01385	95.5	9.83e-22	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-0154737_56	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0154737_56	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
Pfam	UHGV-0154737_56	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-0154737_56	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0154737_56	PF19835,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_58	phrog_64	149.7	9.80909e-45	portal protein	head and packaging
UniRef90	UHGV-0154737_58	UniRef90_A0A7X7EMS9	302.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0154737_58	428127.EUBDOL_01552	204.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0154737_58	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0154737_58	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0154737_59	phrog_38	75.8	3.7e-22	terminase large subunit	head and packaging
Pfam	UHGV-0154737_59	PF14890	N/A	N/A	Intein splicing domain	Intein_splicing
NCBIFam	UHGV-0154737_59	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
COG	UHGV-0154737_59	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
PHROG	UHGV-0154737_60	phrog_801	100.0	3.4e-29	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0154737_60	UniRef90_A0A7X8EV86	131.0	5.67e-38	N/A	N/A
eggNOG-mapper	UHGV-0154737_60	943335.F4N9T4_9CAUD	79.7	2.13e-17	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0154737_60	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0154737_60	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-0154737_63	K03466	220.1	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0154737_63	phrog_1358	171.0	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0154737_63	UniRef90_A0A1E5NH19	166.0	3.92364e-44	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-0154737_63	714313.LSA_10210	167.0	9.80909e-44	Belongs to the FtsK SpoIIIE SftA family	N/A
PADLOC	UHGV-0154737_63	SspH_00004	140.6	1.29998e-41	SspH	SSP
Pfam	UHGV-0154737_63	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0154737_63	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-0154737_63	PF01580,PF17854,MF_01076,NF041214,COG0433	N/A	N/A	N/A	N/A
Pfam	UHGV-0154737_65	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
PHROG	UHGV-0154737_66	phrog_4973	58.1	1.6e-16	N/A	unknown function
UniRef90	UHGV-0154737_66	UniRef90_A0A3R6RL03	55.8	0.0000000137	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0154737_66	40215.BBOS01000010_gene3125	52.0	0.0000000738	Helix-turn-helix domain	N/A
Pfam	UHGV-0154737_66	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0154737_66	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0154737_67	K14060	73.1	5.4e-21	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0154737_67	phrog_125	69.9	5e-20	DNA invertase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0154737_67	1123311.KB904475_gene1420	57.0	0.0000000582	recombinase activity	N/A
Pfam	UHGV-0154737_67	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0154737_67	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A