UHGV-0154940 (vOTU-000222)

Viral Genome: UHGV-0154940

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0154940
vOTU ID	vOTU-000222
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_465021
Associated BioSample	SAMN06111972
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.62
Jumbo phage	No

Genome content
Genome length (bp)	46,526
GC content	41.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	91%
Average CDS length (bps)	588.92
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0154940_1	PF01522	N/A	N/A	Polysaccharide deacetylase	Polysacc_deac_1
PHROG	UHGV-0154940_2	phrog_533	288.2	0	portal protein	head and packaging
UniRef90	UHGV-0154940_2	UniRef90_A0A1C6CDM8	702.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0154940_2	33035.JPJF01000106_gene3135	542.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0154940_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0154940_4	K06909	330.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0154940_4	phrog_3717	159.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0154940_4	UniRef90_A0A395X9V4	833.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0154940_4	33035.JPJF01000106_gene3136	406.0	0	Terminase small subunit	N/A
Pfam	UHGV-0154940_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0154940_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0154940_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0154940_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_5	phrog_606	89.9	2.9e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0154940_5	UniRef90_UPI00195648BB	173.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0154940_5	397290.C810_05185	176.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0154940_5	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0154940_5	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0154940_8	1235790.C805_00035	52.4	0.000000409	N/A	N/A
structural_annotation	UHGV-0154940_11	PF06107,COG4481	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_12	phrog_20593	52.2	0.0000000000000085	N/A	unknown function
PHROG	UHGV-0154940_13	phrog_20593	57.6	8.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0154940_14	476272.RUMHYD_01751	49.3	0.00000322	N/A	N/A
AcrCatalog	UHGV-0154940_14	cluster_11670	45.1	0.00000000564	NA	N/A
structural_annotation	UHGV-0154940_20	PF18350,TIGR00739,COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_21	phrog_17690	130.1	7.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-0154940_21	476272.RUMHYD_03925	166.0	0	N/A	N/A
UniRef90	UHGV-0154940_23	UniRef90_A0A6L8SWV5	169.0	0	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0154940_23	PF01726,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0154940_25	K15255	247.9	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-0154940_25	phrog_325	265.7	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154940_25	UniRef90_A0A2V2D011	878.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0154940_25	1121333.JMLH01000003_gene334	273.0	0	PIF1-like helicase	N/A
PADLOC	UHGV-0154940_25	cluster10	56.5	6.3e-19	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-0154940_25	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-0154940_25	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0154940_25	PF05970,PF18350,MF_03176,TIGR02768,COG0507	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_26	phrog_8841	491.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154940_26	UniRef90_A0A3A6GQS5	1277.0	0	N/A	N/A
eggNOG-mapper	UHGV-0154940_26	411460.RUMTOR_02070	531.0	0	N/A	N/A
Pfam	UHGV-0154940_26	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0154940_26	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0154940_26	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154940_26	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0154940_27	K02316	74.7	1.4e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0154940_27	phrog_11992	126.8	1.9e-37	N/A	unknown function
UniRef90	UHGV-0154940_27	UniRef90_A0A3A6GSV7	334.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0154940_27	411460.RUMTOR_02069	125.0	2.97e-34	CHC2 zinc finger	N/A
PADLOC	UHGV-0154940_27	drt-UG29	45.0	0.00000000000089	DRT	DRT
Pfam	UHGV-0154940_27	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0154940_27	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0154940_27	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_28	phrog_3490	157.1	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154940_28	UniRef90_R9KEE1	262.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0154940_28	1256908.HMPREF0373_00660	270.0	0	N/A	N/A
Pfam	UHGV-0154940_28	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0154940_28	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_29	phrog_18107	238.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0154940_29	1256908.HMPREF0373_00659	223.0	0	N/A	N/A
structural_annotation	UHGV-0154940_29	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_30	phrog_2872	243.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154940_30	UniRef90_UPI0015715A02	381.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0154940_30	1256908.HMPREF0373_00658	339.0	0	AAA domain	N/A
Pfam	UHGV-0154940_30	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0154940_30	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0154940_31	UniRef90_R6RDX0	78.6	7.47e-18	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0154940_32	NF011879	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0154940_36	cluster_17974	57.8	0.00000000000000767	NA	N/A
PHROG	UHGV-0154940_37	phrog_6058	52.4	0.0000000000000056	N/A	unknown function
UniRef90	UHGV-0154940_37	UniRef90_A0A2V1JQ38	62.4	0.000000000127	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0154940_37	742733.HMPREF9469_05094	60.5	0.000000000121	N/A	N/A
UniRef90	UHGV-0154940_39	UniRef90_A0A373NQX7	137.0	4.77997e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0154940_39	1163671.JAGI01000002_gene3923	87.0	7.36e-22	N/A	N/A
structural_annotation	UHGV-0154940_39	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0154940_40	K22299	64.6	2.2e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0154940_40	phrog_8	70.8	3.1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0154940_40	UniRef90_UPI000E51662C	227.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0154940_40	1140001.I571_01121	96.7	3.02e-23	Peptidase S24-like	N/A
Pfam	UHGV-0154940_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0154940_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0154940_40	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_42	phrog_8545	63.3	3.8e-18	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0154940_42	UniRef90_UPI001C0EAFDF	209.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0154940_42	742740.HMPREF9474_03479	149.0	4.48416e-44	tRNA_anti-like	N/A
Pfam	UHGV-0154940_42	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0154940_42	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-0154940_43	K14059	99.8	4.1e-29	int; integrase	N/A
PHROG	UHGV-0154940_43	phrog_1	127.7	1.2e-37	integrase	integration and excision
UniRef90	UHGV-0154940_43	UniRef90_A0A6L8SXX0	801.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0154940_43	1235792.C808_05256	354.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0154940_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0154940_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0154940_43	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0154940_44	K07273	200.7	0	acm; lysozyme	N/A
PHROG	UHGV-0154940_44	phrog_6745	180.6	0	endolysin	lysis
UniRef90	UHGV-0154940_44	UniRef90_A0A6L8SXR6	903.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0154940_44	457412.RSAG_00790	665.0	0	CHAP domain	N/A
Pfam	UHGV-0154940_44	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0154940_44	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0154940_44	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0154940_44	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0154940_44	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154940_45	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-0154940_47	K19719	121.4	2.3e-36	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0154940_47	phrog_819	164.3	0	tail protein	tail
UniRef90	UHGV-0154940_47	UniRef90_A0A416SLH3	1286.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0154940_47	1508644.SFBmNL_00815	101.0	3.99e-19	N/A	N/A
Pfam	UHGV-0154940_47	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0154940_47	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0154940_47	PF19789,PF16323,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_48	phrog_6616	537.0	0	tail protein	tail
UniRef90	UHGV-0154940_48	UniRef90_A0A352BLY8	527.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0154940_48	33035.JPJF01000043_gene1002	262.0	0	N/A	N/A
structural_annotation	UHGV-0154940_48	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_49	phrog_1194	85.3	5.5e-25	N/A	unknown function
structural_annotation	UHGV-0154940_49	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_50	phrog_1535	395.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0154940_50	UniRef90_A0A173R880	616.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0154940_50	476272.RUMHYD_01785	612.0	0	phage tail tape measure protein	N/A
COG	UHGV-0154940_50	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154940_50	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_51	phrog_59	139.3	1.49995e-41	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0154940_51	UniRef90_UPI000A2DD08F	153.0	3.92364e-44	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0154940_51	1206110.L0P6F5_9CAUD	147.0	3.64057e-42	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-0154940_51	HEase_00016	98.9	2e-29	homing endonuclease	RM
Pfam	UHGV-0154940_51	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0154940_51	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0154940_51	PF07463,PF07453	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_52	phrog_1535	65.4	2.3e-19	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0154940_52	476272.RUMHYD_01785	235.0	0	phage tail tape measure protein	N/A
COG	UHGV-0154940_52	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154940_52	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_53	phrog_706	135.5	3.7e-40	N/A	unknown function
UniRef90	UHGV-0154940_53	UniRef90_UPI001BAD00AD	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0154940_53	411459.RUMOBE_01383	352.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0154940_53	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0154940_53	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_54	phrog_11299	65.3	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0154940_54	476272.RUMHYD_01783	53.5	0.000000639	N/A	N/A
structural_annotation	UHGV-0154940_54	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_55	phrog_3099	132.6	2.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0154940_55	411902.CLOBOL_00129	171.0	0	N/A	N/A
structural_annotation	UHGV-0154940_55	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_56	phrog_3266	92.5	3.6e-27	tail completion	connector
eggNOG-mapper	UHGV-0154940_56	476272.RUMHYD_01781	149.0	8.96831e-44	N/A	N/A
structural_annotation	UHGV-0154940_56	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_57	phrog_556	65.3	6.7e-19	minor head protein	head and packaging
UniRef90	UHGV-0154940_57	UniRef90_UPI000E4989EB	301.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0154940_57	476272.RUMHYD_01780	160.0	0	N/A	N/A
Pfam	UHGV-0154940_57	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0154940_57	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_58	phrog_3366	96.3	2.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0154940_58	476272.RUMHYD_01779	157.0	0	N/A	N/A
structural_annotation	UHGV-0154940_58	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_59	phrog_1129	76.3	2.5e-22	holin	lysis
UniRef90	UHGV-0154940_59	UniRef90_A0A395X7B2	175.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0154940_59	411461.DORFOR_00721	114.0	5.73e-32	N/A	N/A
Pfam	UHGV-0154940_59	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0154940_59	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_60	phrog_541	97.7	7.4e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0154940_60	476272.RUMHYD_01778	94.4	2.77e-22	N/A	N/A
PHROG	UHGV-0154940_61	phrog_544	170.4	0	major head protein	head and packaging
UniRef90	UHGV-0154940_61	UniRef90_A0A395X7A1	703.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0154940_61	1232453.BAIF02000011_gene3359	390.0	0	N/A	N/A
Pfam	UHGV-0154940_61	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0154940_61	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_62	phrog_194	63.5	4.6e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0154940_62	UniRef90_UPI001D14C9C8	191.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0154940_62	476272.RUMHYD_01775	197.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0154940_62	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0154940_63	phrog_28802	221.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0154940_63	476272.RUMHYD_01772	198.0	0	N/A	N/A
PHROG	UHGV-0154940_64	phrog_20016	204.2	0	N/A	unknown function
UniRef90	UHGV-0154940_64	UniRef90_A0A285PT46	164.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0154940_64	397290.C810_05214	184.0	0	N/A	N/A
structural_annotation	UHGV-0154940_64	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0154940_65	phrog_16490	192.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0154940_65	397290.C810_01328	186.0	0	N/A	N/A
PHROG	UHGV-0154940_66	phrog_22984	90.5	1.2e-26	N/A	unknown function
PHROG	UHGV-0154940_67	phrog_21718	134.0	6.7e-40	N/A	unknown function
eggNOG-mapper	UHGV-0154940_67	476272.RUMHYD_01768	131.0	3.97e-37	N/A	N/A
UniRef90	UHGV-0154940_68	UniRef90_A0A395X7A4	178.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0154940_68	476272.RUMHYD_01766	120.0	3.06e-34	N/A	N/A
PHROG	UHGV-0154940_69	phrog_3754	111.8	5e-33	N/A	unknown function
eggNOG-mapper	UHGV-0154940_69	476272.RUMHYD_01764	171.0	0	N/A	N/A
PHROG	UHGV-0154940_70	phrog_581	253.1	0	minor head protein	head and packaging
UniRef90	UHGV-0154940_70	UniRef90_A0A395X791	703.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0154940_70	33035.JPJF01000106_gene3134	382.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0154940_70	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0154940_70	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0154940_70	PF06152	N/A	N/A	N/A	N/A