UHGV-0155187 (vOTU-163779)

Viral Genome: UHGV-0155187

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0155187
vOTU ID	vOTU-163779
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_479122
Associated BioSample	SAMN06115530
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.64 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9534
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.45
Jumbo phage	No

Genome content
Genome length (bp)	38,209
GC content	40.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	94%
Average CDS length (bps)	761.68
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0155187_2	phrog_8	41.5	0.000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0155187_2	UniRef90_A0A8D9UFU3	86.7	1.78e-19	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0155187_2	585501.HMPREF6123_0867	69.3	0.000000000000288	carbohydrate binding	N/A
Pfam	UHGV-0155187_2	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0155187_2	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-0155187_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0155187_3	UniRef90_UPI0011C48861	61.2	0.0000000000585	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0155187_3	1280692.AUJL01000011_gene3217	50.8	0.000000128	N/A	N/A
structural_annotation	UHGV-0155187_3	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_5	phrog_16447	97.5	1.2e-28	N/A	unknown function
UniRef90	UHGV-0155187_5	UniRef90_A0A352P177	122.0	1.98e-32	N/A	N/A
eggNOG-mapper	UHGV-0155187_5	269796.Rru_A2918	107.0	3.69e-27	N/A	N/A
Pfam	UHGV-0155187_5	PF10083	N/A	N/A	N/A	DUF2321
COG	UHGV-0155187_5	COG4306	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0155187_5	PF10083,COG4306	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0155187_7	1123288.SOV_5c02190	49.3	0.00000482	Lysin motif	N/A
Pfam	UHGV-0155187_7	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0155187_7	COG1388	N/A	N/A	LysM repeat	N/A
UniRef90	UHGV-0155187_8	UniRef90_A0A3D4MVI6	51.6	0.00000999	DpnD protein	N/A
Pfam	UHGV-0155187_8	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0155187_8	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
KOfam	UHGV-0155187_10	K19171	83.9	1.1e-24	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0155187_10	phrog_77	204.4	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0155187_10	UniRef90_A0A6P1Y9P5	286.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0155187_10	218284.CCDN010000001_gene819	268.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0155187_10	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0155187_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0155187_10	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_11	phrog_561	165.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0155187_11	UniRef90_H2BD49	204.0	0	Putative RecT protein	N/A
eggNOG-mapper	UHGV-0155187_11	1215092.PA6_009_00610	209.0	0	N/A	N/A
structural_annotation	UHGV-0155187_11	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0155187_12	K06167	59.5	5.9e-17	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0155187_12	phrog_392	205.8	0	metal-dependent hydrolase	other
UniRef90	UHGV-0155187_12	UniRef90_A0A268E2G0	232.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0155187_12	1196323.ALKF01000160_gene5063	227.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0155187_12	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0155187_12	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0155187_12	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_13	phrog_11269	55.9	6.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0155187_13	1121428.DESHY_20121___1	76.6	0.000000000000012	N/A	N/A
PHROG	UHGV-0155187_14	phrog_11233	91.8	5.5e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0155187_14	UniRef90_UPI0018C576A5	118.0	1.78e-28	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0155187_14	1280689.AUJC01000011_gene1501	102.0	3.14e-23	DnaD domain protein	N/A
Pfam	UHGV-0155187_14	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
COG	UHGV-0155187_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0155187_14	PF07106,MF_01819,NF040642,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0155187_15	K02315	115.1	8.5e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0155187_15	phrog_50	110.1	2.5e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0155187_15	UniRef90_A0A410PX27	221.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0155187_15	445972.ANACOL_01829	210.0	0	N/A	N/A
COG	UHGV-0155187_15	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0155187_15	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_16	phrog_5706	53.1	0.0000000000000058	N/A	unknown function
KOfam	UHGV-0155187_17	K03111	140.3	2.20004e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0155187_17	phrog_44	137.4	9.70007e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0155187_17	UniRef90_E8LE33	195.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0155187_17	626939.HMPREF9443_01150	195.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0155187_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0155187_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0155187_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0155187_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0155187_17	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_23	phrog_36	49.2	0.000000000000051	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0155187_23	1123288.SOV_4c02500	105.0	2.35e-26	Archaeal holliday junction resolvase (hjc)	N/A
Pfam	UHGV-0155187_23	PF08279	N/A	N/A	HTH domain	HTH_11
eggNOG-mapper	UHGV-0155187_24	279808.SH0067	92.0	1.39e-19	N/A	N/A
KOfam	UHGV-0155187_26	K02238	51.3	0.000000000000013	comEC; competence protein ComEC	N/A
PHROG	UHGV-0155187_26	phrog_7043	51.1	0.0000000000000078	tail protein	tail
UniRef90	UHGV-0155187_26	UniRef90_UPI001ADD747F	278.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0155187_26	1122216.AUHW01000016_gene1020	256.0	0	competence protein COMEC	N/A
Pfam	UHGV-0155187_26	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
COG	UHGV-0155187_26	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0155187_27	K06926	160.2	0	N/A	N/A
PHROG	UHGV-0155187_27	phrog_5836	104.2	1.3e-30	N/A	unknown function
UniRef90	UHGV-0155187_27	UniRef90_Q0SUZ1	448.0	0	ATPase_AAA_core domain-containing protein	N/A
eggNOG-mapper	UHGV-0155187_27	397290.C810_01297	385.0	0	AAA domain, putative AbiEii toxin, Type IV TA system	N/A
PADLOC	UHGV-0155187_27	AbiLi-1	124.2	1.7e-36	AbiLi	Abi
Pfam	UHGV-0155187_27	PF13304	N/A	N/A	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
COG	UHGV-0155187_27	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0155187_27	PF13304,MF_00365,NF041760,COG4637	N/A	N/A	N/A	N/A
KOfam	UHGV-0155187_28	K07319	124.2	1.6e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0155187_28	phrog_498	414.4	0	DNA methyltransferase	other
UniRef90	UHGV-0155187_28	UniRef90_A0A0U1L1W0	484.0	0	Adenine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0155187_28	1123288.SOV_2c03720	484.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0155187_28	MTase_II_00015	261.6	0	Type II methyltransferase	RM
Pfam	UHGV-0155187_28	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0155187_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0155187_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0155187_28	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_29	phrog_2443	278.4	0	amidoligase enzyme	other
UniRef90	UHGV-0155187_29	UniRef90_A0A6N7W213	368.0	0	Amidoligase	N/A
eggNOG-mapper	UHGV-0155187_29	1408422.JHYF01000021_gene987	363.0	0	amidoligase enzyme	N/A
Pfam	UHGV-0155187_29	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0155187_29	PF12224	N/A	N/A	N/A	N/A
KOfam	UHGV-0155187_31	K22014	51.4	0.000000000000018	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	N/A
PHROG	UHGV-0155187_31	phrog_57	70.3	2.5e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0155187_31	UniRef90_UPI001E630431	99.4	3.63e-22	terminase small subunit	N/A
eggNOG-mapper	UHGV-0155187_31	1122180.Lokhon_01868	63.2	0.00000000293	Phage DNA packaging protein Nu1	N/A
COG	UHGV-0155187_31	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
KOfam	UHGV-0155187_32	K21512	360.9	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0155187_32	phrog_15	473.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0155187_32	UniRef90_A0A316S753	982.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0155187_32	883156.HMPREF9282_01236	582.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0155187_32	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0155187_32	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0155187_32	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
structural_annotation	UHGV-0155187_32	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_34	phrog_21	273.7	0	portal protein	head and packaging
UniRef90	UHGV-0155187_34	UniRef90_A0A316S9H5	639.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0155187_34	665959.HMPREF1013_00845	360.0	0	Portal protein	N/A
Pfam	UHGV-0155187_34	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0155187_34	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0155187_34	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0155187_34	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0155187_35	K06904	64.1	2.3e-18	N/A	N/A
PHROG	UHGV-0155187_35	phrog_4523	459.4	0	major head and protease protein	head and packaging
UniRef90	UHGV-0155187_35	UniRef90_A0A3C1INU1	615.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0155187_35	883156.HMPREF9282_01239	392.0	0	Caudovirus prohead protease	N/A
Pfam	UHGV-0155187_35	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0155187_35	COG3087	N/A	N/A	Cell division protein FtsN	N/A
structural_annotation	UHGV-0155187_35	PF19821,PF04586,MF_04119,TIGR04387,TIGR01543,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_36	phrog_122	58.0	1.4e-16	head decoration	head and packaging
UniRef90	UHGV-0155187_36	UniRef90_A0A316S7V6	149.0	2.94273e-44	DNA breaking-rejoining protein	N/A
eggNOG-mapper	UHGV-0155187_36	318161.Sden_3248	60.5	0.000000000307	N/A	N/A
Pfam	UHGV-0155187_36	PF09956	N/A	N/A	N/A	DUF2190
COG	UHGV-0155187_36	COG5471	N/A	N/A	Predicted phage recombinase, RecA/RadA family	N/A
structural_annotation	UHGV-0155187_36	PF09956,COG5471	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0155187_37	PF13856,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0155187_38	910314.HMPREF9220_0616	137.0	1.32e-38	N/A	N/A
structural_annotation	UHGV-0155187_38	PF05069,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_39	phrog_17431	53.3	0.0000000000000044	N/A	unknown function
structural_annotation	UHGV-0155187_39	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_40	phrog_290	156.7	0	minor tail protein	tail
UniRef90	UHGV-0155187_40	UniRef90_UPI001032C993	299.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0155187_40	484770.UFO1_2456	245.0	0	N/A	N/A
Pfam	UHGV-0155187_40	PF18906	N/A	N/A	Phage tail tube protein	Phage_tube_2
structural_annotation	UHGV-0155187_40	PF18906,TIGR02241,TIGR02126,COG5437,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_42	phrog_30973	140.1	0	N/A	unknown function
UniRef90	UHGV-0155187_42	UniRef90_UPI001032C687	639.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0155187_42	484770.UFO1_2454	317.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0155187_42	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0155187_42	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_43	phrog_384	57.3	4.3e-16	virion structural protein	head and packaging
UniRef90	UHGV-0155187_43	UniRef90_UPI001032B7DB	106.0	1.41e-27	phage tail protein	N/A
eggNOG-mapper	UHGV-0155187_43	1280706.AUJE01000003_gene2251	61.6	0.000000000154	N/A	N/A
structural_annotation	UHGV-0155187_43	PF05939,TIGR02217,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_44	phrog_18	59.0	3.2e-17	minor tail protein	tail
UniRef90	UHGV-0155187_44	UniRef90_UPI000405B9EE	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0155187_44	1280706.AUJE01000003_gene2250	221.0	0	Phage minor tail protein L	N/A
Pfam	UHGV-0155187_44	PF05100	N/A	N/A	Phage minor tail protein L	Phage_tail_L
COG	UHGV-0155187_44	COG4672	N/A	N/A	Phage tail protein	N/A
structural_annotation	UHGV-0155187_44	PF08875,TIGR01600,COG4672	N/A	N/A	N/A	N/A
KOfam	UHGV-0155187_45	K13695	60.3	3.1e-17	nlpC; probable lipoprotein NlpC	N/A
PHROG	UHGV-0155187_45	phrog_329	51.2	0.000000000000012	minor tail protein	tail
UniRef90	UHGV-0155187_45	UniRef90_A0A316S7W5	200.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0155187_45	1273103.NM10_03081	159.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0155187_45	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0155187_45	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0155187_45	PF00877,NF008096,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_46	phrog_31	415.4	0	baseplate hub protein Tal	tail
UniRef90	UHGV-0155187_46	UniRef90_A0A316S7W9	1414.0	0	Phage-tail_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0155187_46	1280706.AUJE01000003_gene2248	716.0	0	cellulase activity	N/A
Pfam	UHGV-0155187_46	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
NCBIFam	UHGV-0155187_46	NF040662.1	N/A	N/A	host specificity factor TipJ family phage tail protein	N/A
COG	UHGV-0155187_46	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0155187_46	PF13550,PF00041,PF16323,NF040662,COG4733	N/A	N/A	N/A	N/A
PHROG	UHGV-0155187_47	phrog_4209	45.6	2.4e-24	tail fiber protein	tail
eggNOG-mapper	UHGV-0155187_47	1121346.KB899820_gene2840	61.2	0.000000114	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0155187_47	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A