UHGV-0157131 (vOTU-046236)

Viral Genome: UHGV-0157131

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0157131
vOTU ID	vOTU-046236
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_445289
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.58
Jumbo phage	No

Genome content
Genome length (bp)	42,387
GC content	54.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	93%
Average CDS length (bps)	636.77
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0157131_2	445972.ANACOL_01149	89.0	1.11e-22	N/A	N/A
COG	UHGV-0157131_3	COG1395	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-0157131_3	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_4	phrog_524	95.1	1.2e-27	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0157131_4	UniRef90_UPI001B389E5A	187.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_4	397290.C810_01339	180.0	0	P22_AR N-terminal domain	N/A
Pfam	UHGV-0157131_4	PF10547	N/A	N/A	P22_AR N-terminal domain	P22_AR_N
Pfam	UHGV-0157131_4	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0157131_4	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0157131_4	PF10552,PF10547,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_5	phrog_18248	46.4	0.00000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157131_5	UniRef90_A0A847W1V2	87.4	2.29e-21	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0157131_5	1308866.J416_09304	63.2	0.0000000000046	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0157131_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0157131_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157131_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0157131_7	K22300	50.9	0.000000000000034	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0157131_7	phrog_3	47.2	0.000000000001	transcriptional repressor	transcription regulation
UniRef90	UHGV-0157131_7	UniRef90_A0A329TTX5	73.2	9.95e-16	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0157131_7	1504823.CCMM01000008_gene1079	58.2	0.000000000172	sequence-specific DNA binding	N/A
Pfam	UHGV-0157131_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157131_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157131_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0157131_8	K22300	54.4	0.0000000000000032	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0157131_8	phrog_2967	61.5	1.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157131_8	UniRef90_A0A1Y3ZRE4	75.5	0.00000000000001	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_8	1235798.C817_00620	70.5	0.000000000000139	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0157131_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157131_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0157131_8	PF12844,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0157131_11	K14059	177.7	0	int; integrase	N/A
PHROG	UHGV-0157131_11	phrog_1	160.3	0	integrase	integration and excision
UniRef90	UHGV-0157131_11	UniRef90_A0A8J6JEJ8	323.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0157131_11	742738.HMPREF9460_01344	236.0	0	Phage integrase family	N/A
Pfam	UHGV-0157131_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0157131_11	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0157131_11	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_12	phrog_19458	444.6	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157131_12	UniRef90_A0A1V5KAU2	328.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_12	1226322.HMPREF1545_03514	409.0	0	N/A	N/A
Pfam	UHGV-0157131_12	PF12083	N/A	N/A	N/A	DUF3560
COG	UHGV-0157131_12	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-0157131_14	phrog_10415	63.8	1.3e-18	N/A	unknown function
UniRef90	UHGV-0157131_14	UniRef90_UPI00068FC51E	271.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_14	1519439.JPJG01000053_gene1369	271.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0157131_14	PF00226	N/A	N/A	DnaJ domain	DnaJ
Pfam	UHGV-0157131_14	PF18847	N/A	N/A	Large polyvalent protein associated domain 29	LPD29
COG	UHGV-0157131_14	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
UniRef90	UHGV-0157131_15	UniRef90_A0A1Y3R5J8	61.6	0.0000000000248	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_15	1160721.RBI_I00206	62.8	0.00000000000153	N/A	N/A
structural_annotation	UHGV-0157131_15	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_16	phrog_374	64.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157131_16	UniRef90_A0A316L5V7	258.0	0	AP2/ERF domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_16	879308.HMPREF9130_0377	119.0	2.61e-30	N/A	N/A
Pfam	UHGV-0157131_16	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0157131_16	PF18337,PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-0157131_17	K22300	41.2	0.000000000036	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0157131_17	UniRef90_A0A6N3FXW7	140.0	1.82996e-41	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0157131_17	742738.HMPREF9460_04059	74.7	9.38e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0157131_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157131_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157131_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0157131_18	cluster_11486	50.4	0.0000000000698	NA	N/A
KOfam	UHGV-0157131_19	K07474	150.7	1.68156e-44	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0157131_19	phrog_51	163.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0157131_19	UniRef90_A0A354J789	158.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0157131_19	509191.AEDB02000023_gene3615	154.0	2.8026e-45	Terminase small subunit	N/A
Pfam	UHGV-0157131_19	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0157131_19	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0157131_19	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0157131_20	K06909	147.7	1.09301e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0157131_20	phrog_979	168.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0157131_20	UniRef90_UPI0019677368	560.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0157131_20	665956.HMPREF1032_03884	511.0	0	Terminase-like family	N/A
Pfam	UHGV-0157131_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0157131_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0157131_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_21	phrog_156	102.5	2.7e-30	portal protein	head and packaging
structural_annotation	UHGV-0157131_21	PF12236,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157131_23	COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_24	phrog_371	53.9	0.0000000000000029	major head protein	head and packaging
UniRef90	UHGV-0157131_24	UniRef90_R7FUR2	226.0	0	Mu-like prophage major head subunit gpt-like protein	N/A
Pfam	UHGV-0157131_24	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0157131_24	PF19774,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_25	phrog_13046	141.3	5.5001e-42	N/A	unknown function
structural_annotation	UHGV-0157131_25	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_26	phrog_3287	160.0	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0157131_26	1232449.BAHV02000016_gene1816	416.0	0	N/A	N/A
structural_annotation	UHGV-0157131_26	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_28	phrog_24451	55.3	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0157131_28	1408437.JNJN01000040_gene189	133.0	1.3e-38	N/A	N/A
UniRef90	UHGV-0157131_29	UniRef90_A0A1Y3Z0U4	53.9	0.00000000825	XkdX family protein (Fragment)	N/A
structural_annotation	UHGV-0157131_29	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0157131_30	K01448	154.4	1.4013e-45	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0157131_30	phrog_435	166.7	0	endolysin	lysis
UniRef90	UHGV-0157131_30	UniRef90_A0A1Y4RIN0	576.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_30	1121344.JHZO01000003_gene744	247.0	0	Ami_3	N/A
Pfam	UHGV-0157131_30	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0157131_30	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0157131_30	PF09992,COG4632,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157131_32	UniRef90_U2AS96	1082.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_32	693746.OBV_01590	606.0	0	N/A	N/A
Pfam	UHGV-0157131_32	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0157131_33	phrog_1129	67.0	2.2e-19	holin	lysis
UniRef90	UHGV-0157131_33	UniRef90_UPI0002E32382	120.0	6.42e-34	phage holin family protein	N/A
eggNOG-mapper	UHGV-0157131_33	1007096.BAGW01000036_gene2663	120.0	1.08e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0157131_33	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0157131_33	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157131_36	UniRef90_A0A1Y3RJS2	165.0	0	Sigma70_r4_2 domain-containing protein	N/A
KOfam	UHGV-0157131_39	K03091	84.1	2.4e-24	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0157131_39	UniRef90_A0A174RNL1	129.0	1.74e-35	RNA polymerase sigma factor SigS	N/A
eggNOG-mapper	UHGV-0157131_39	506534.Rhein_1610	54.7	0.000000789	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	N/A
Pfam	UHGV-0157131_39	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0157131_39	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
NCBIFam	UHGV-0157131_39	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0157131_39	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0157131_39	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_40	phrog_3301	137.7	4.69996e-41	pyrophosphatase	other
eggNOG-mapper	UHGV-0157131_40	411459.RUMOBE_01042	122.0	2.51e-34	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-0157131_40	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0157131_40	COG1694	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157131_42	UniRef90_UPI00082EBC63	56.6	0.0000000312	Lar family restriction alleviation protein	N/A
UniRef90	UHGV-0157131_47	UniRef90_UPI00187349CE	256.0	0	N/A	N/A
UniRef90	UHGV-0157131_48	UniRef90_A0A315Y4I9	90.1	6.14e-21	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0157131_48	742738.HMPREF9460_04054	62.4	0.0000000000931	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0157131_52	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
structural_annotation	UHGV-0157131_52	PF13392,PF20987	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_53	phrog_1770	98.1	9.7e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157131_53	UniRef90_A0A533R9G2	106.0	2.16e-26	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-0157131_53	1121438.JNJA01000001_gene2624	91.3	8.76e-21	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-0157131_53	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-0157131_53	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_54	phrog_9804	161.6	0	N/A	unknown function
UniRef90	UHGV-0157131_54	UniRef90_UPI0018976F94	253.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0157131_54	1121344.JHZO01000003_gene981	207.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0157131_54	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0157131_54	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_55	phrog_270	81.2	1.8e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0157131_55	498761.HM1_0053	85.1	1.71e-16	HNH endonuclease	N/A
COG	UHGV-0157131_55	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0157131_56	K03111	151.1	1.12104e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0157131_56	phrog_44	152.6	1.4013e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157131_56	UniRef90_A0A8J7VJS5	219.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0157131_56	411467.BACCAP_02389	214.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0157131_56	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0157131_56	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0157131_56	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0157131_56	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0157131_56	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0157131_57	K06167	40.2	0.000000000016	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0157131_57	phrog_392	110.1	3e-32	metal-dependent hydrolase	other
UniRef90	UHGV-0157131_57	UniRef90_UPI001D0251E4	304.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0157131_57	665956.HMPREF1032_03101	179.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0157131_57	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0157131_57	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0157131_57	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_58	phrog_3657	331.8	0	N/A	unknown function
UniRef90	UHGV-0157131_58	UniRef90_UPI001DC4E782	277.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0157131_58	411461.DORFOR_00020	294.0	0	N/A	N/A
PHROG	UHGV-0157131_59	phrog_674	160.1	0	N/A	unknown function
UniRef90	UHGV-0157131_59	UniRef90_A0A7X9AE52	161.0	1.82169e-44	N/A	N/A
eggNOG-mapper	UHGV-0157131_59	665956.HMPREF1032_03103	162.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0157131_59	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0157131_59	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0157131_61	phrog_4433	238.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0157131_61	33035.JPJF01000122_gene2458	150.0	3.33999e-41	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0157131_61	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0157131_61	NF007410	N/A	N/A	N/A	N/A