UHGV-0157174 (vOTU-018223)

Viral Genome: UHGV-0157174

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0157174
vOTU ID	vOTU-018223
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_461195
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.11 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.46
Jumbo phage	No

Genome content
Genome length (bp)	29,713
GC content	50.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	93%
Average CDS length (bps)	614.93
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0157174_1	phrog_1129	65.5	6.5e-19	holin	lysis
UniRef90	UHGV-0157174_1	UniRef90_A0A2V2CUX8	94.7	1.15e-23	Enolase	N/A
eggNOG-mapper	UHGV-0157174_1	742740.HMPREF9474_03522	93.6	5.52e-24	N/A	N/A
Pfam	UHGV-0157174_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0157174_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_2	phrog_4105	83.1	2.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0157174_2	592026.GCWU0000282_003290	89.4	8.61e-22	N/A	N/A
KOfam	UHGV-0157174_3	K01447	78.0	1.7e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0157174_3	phrog_1794	161.7	0	amidase	lysis
UniRef90	UHGV-0157174_3	UniRef90_R5AZE6	286.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0157174_3	1235793.C809_04312	225.0	0	Ami_2	N/A
Pfam	UHGV-0157174_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0157174_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0157174_3	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157174_4	PF00629,NF033675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157174_5	411473.RUMCAL_00420	66.6	0.0000000076	nuclear chromosome segregation	N/A
COG	UHGV-0157174_5	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0157174_6	phrog_372	196.5	0	tail protein	tail
UniRef90	UHGV-0157174_6	UniRef90_UPI001C0AA9E4	151.0	5.83e-36	N/A	N/A
eggNOG-mapper	UHGV-0157174_6	1235802.C823_05263	113.0	1.24e-23	N/A	N/A
Pfam	UHGV-0157174_6	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0157174_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0157174_6	PF05895,NF010681,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_7	phrog_6616	128.5	2.9e-39	tail protein	tail
UniRef90	UHGV-0157174_7	UniRef90_R5GWP5	90.9	9.08e-16	KID repeat family protein	N/A
eggNOG-mapper	UHGV-0157174_7	469596.HMPREF9488_01318	282.0	0	N/A	N/A
structural_annotation	UHGV-0157174_7	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_8	phrog_1194	132.5	1.5e-39	N/A	unknown function
UniRef90	UHGV-0157174_8	UniRef90_A0A0B3VTI7	113.0	3.59e-30	N/A	N/A
eggNOG-mapper	UHGV-0157174_8	1280692.AUJL01000027_gene2149	108.0	3.88e-29	N/A	N/A
Pfam	UHGV-0157174_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0157174_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_9	phrog_1535	158.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0157174_9	1121866.AUGK01000003_gene1437	286.0	0	phage tail tape measure protein	N/A
COG	UHGV-0157174_9	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0157174_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157174_10	1121333.JMLH01000047_gene1011	80.9	1.85e-17	N/A	N/A
UniRef90	UHGV-0157174_11	UniRef90_UPI00164D364F	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157174_11	469596.HMPREF9488_01311	87.4	7.29e-21	N/A	N/A
Pfam	UHGV-0157174_11	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0157174_11	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_12	phrog_158	60.1	4.9e-17	major tail protein	tail
UniRef90	UHGV-0157174_12	UniRef90_UPI00164D954A	265.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0157174_12	1232453.BAIF02000058_gene1634	101.0	1.19e-25	N/A	N/A
Pfam	UHGV-0157174_12	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0157174_12	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157174_13	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157174_14	1232453.BAIF02000058_gene1631	58.9	0.0000000203	N/A	N/A
eggNOG-mapper	UHGV-0157174_15	1298920.KI911353_gene2656	86.7	4.61e-20	N/A	N/A
UniRef90	UHGV-0157174_16	UniRef90_UPI00164E20D5	204.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0157174_16	1298920.KI911353_gene2658	63.9	0.00000000000822	N/A	N/A
Pfam	UHGV-0157174_16	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0157174_16	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_17	phrog_1328	122.2	3.5e-36	major head protein	head and packaging
UniRef90	UHGV-0157174_17	UniRef90_UPI00164DD2D5	651.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157174_17	665956.HMPREF1032_03619	233.0	0	N/A	N/A
Pfam	UHGV-0157174_17	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0157174_17	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_20	phrog_64	209.2	0	portal protein	head and packaging
UniRef90	UHGV-0157174_20	UniRef90_UPI001C02F349	922.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0157174_20	1123263.AUKY01000015_gene1609	421.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0157174_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0157174_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_21	phrog_38	154.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0157174_21	UniRef90_UPI00164E3A67	1091.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0157174_21	1298920.KI911353_gene2682	289.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0157174_21	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0157174_21	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157174_21	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_22	phrog_8545	58.0	2e-16	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0157174_22	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0157174_22	PF12869,MF_01959,NF009635,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-0157174_23	K06400	199.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0157174_23	phrog_95	185.7	0	integrase	integration and excision
UniRef90	UHGV-0157174_23	UniRef90_UPI00164DD5BB	503.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0157174_23	697329.Rumal_3466	353.0	0	resolvase	N/A
Pfam	UHGV-0157174_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0157174_23	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0157174_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0157174_23	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157174_26	PF13742,MF_01959,NF009635,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_27	phrog_4264	68.9	6.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0157174_27	442493.A8E2H1_BPPHE	53.9	0.0000000529	N/A	N/A
PHROG	UHGV-0157174_28	phrog_606	43.3	0.0000000000032	terminase small subunit	head and packaging
UniRef90	UHGV-0157174_28	UniRef90_UPI001C012D23	278.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0157174_28	1235793.C809_00539	69.7	0.00000000000228	N/A	N/A
Pfam	UHGV-0157174_28	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0157174_28	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0157174_30	K23779	41.8	0.000000000023	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0157174_30	phrog_8	43.5	0.0000000000076	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157174_30	UniRef90_A0A1V5X1Q4	50.8	0.000000747	HTH-type transcriptional regulator SinR	N/A
eggNOG-mapper	UHGV-0157174_30	1123263.AUKY01000012_gene1991	48.5	0.00000102	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0157174_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157174_30	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0157174_30	PF13560,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_33	phrog_924	54.5	0.0000000000000023	N/A	unknown function
UniRef90	UHGV-0157174_33	UniRef90_UPI00086F80F1	61.6	0.00000000498	N/A	N/A
eggNOG-mapper	UHGV-0157174_33	1127357.I1TEE2_9CAUD	53.5	0.00000148	N/A	N/A
Pfam	UHGV-0157174_33	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0157174_35	UniRef90_Q5YA82	94.4	1.59e-23	28	N/A
dbAPIS	UHGV-0157174_35	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0157174_38	phrog_22389	46.0	0.00000000000055	N/A	unknown function
structural_annotation	UHGV-0157174_38	PF01402,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_41	phrog_599	45.4	0.0000000000019	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0157174_41	UniRef90_A0A845MWR1	50.8	0.000000538	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0157174_41	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0157174_41	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0157174_41	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_42	phrog_1156	317.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157174_42	UniRef90_UPI00164E4416	1015.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-0157174_42	649747.HMPREF0083_00553	324.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0157174_42	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0157174_42	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0157174_42	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0157174_42	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0157174_42	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0157174_42	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_44	phrog_1829	128.8	3.3e-38	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157174_44	UniRef90_UPI00164DE9BA	487.0	0	primase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0157174_44	1121866.AUGK01000003_gene1409	204.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-0157174_44	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0157174_44	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-0157174_44	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0157174_45	phrog_30550	174.9	0	N/A	unknown function
UniRef90	UHGV-0157174_45	UniRef90_A0A2N2CRJ1	165.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157174_45	1519439.JPJG01000077_gene920	136.0	1.16e-39	Cell Wall Hydrolase	N/A
structural_annotation	UHGV-0157174_45	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A