UHGV-0157403 (vOTU-064604)

Viral Genome: UHGV-0157403

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0157403
vOTU ID	vOTU-064604
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_472046
Associated BioSample	SAMN06111939
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.59 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.31
Jumbo phage	No

Genome content
Genome length (bp)	34,234
GC content	41.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	91%
Average CDS length (bps)	585.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0157403_1	K01448	40.1	0.00000000003	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0157403_1	phrog_2742	82.5	6.2e-24	endolysin	lysis
UniRef90	UHGV-0157403_1	UniRef90_A0A1C5YBQ9	395.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0157403_1	97139.C824_00247	250.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0157403_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0157403_1	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
COG	UHGV-0157403_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0157403_2	phrog_1129	88.1	5.7e-26	holin	lysis
UniRef90	UHGV-0157403_2	UniRef90_UPI001BC82F37	167.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0157403_2	411460.RUMTOR_01325	148.0	1.4013e-45	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0157403_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0157403_2	PF16079	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157403_3	UniRef90_A0A3R6SMZ1	140.0	1.45006e-41	CTP synthase	N/A
eggNOG-mapper	UHGV-0157403_3	411490.ANACAC_00599	133.0	1.57e-39	N/A	N/A
PHROG	UHGV-0157403_4	phrog_588	493.5	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0157403_4	UniRef90_UPI000467D60B	793.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0157403_4	411470.RUMGNA_02230	787.0	0	N/A	N/A
structural_annotation	UHGV-0157403_4	PF14594,PF19081,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_5	phrog_202	300.8	0	distal tail protein Dit	tail
UniRef90	UHGV-0157403_5	UniRef90_A0A1C5Y9Z6	445.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0157403_5	411470.RUMGNA_02229	394.0	0	N/A	N/A
Pfam	UHGV-0157403_5	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0157403_5	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0157403_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0157403_5	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_6	phrog_9959	165.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0157403_6	UniRef90_A0A8B3C0A6	779.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157403_6	411470.RUMGNA_02228	781.0	0	tape measure	N/A
Pfam	UHGV-0157403_6	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0157403_6	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0157403_6	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0157403_6	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_7	phrog_706	152.0	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0157403_7	UniRef90_A7B3U5	312.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0157403_7	411470.RUMGNA_02226	312.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0157403_7	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0157403_7	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_8	phrog_4450	113.7	1.2e-33	N/A	unknown function
UniRef90	UHGV-0157403_8	UniRef90_A0A7M2RHR3	58.2	0.0000000272	AP endonuclease	N/A
eggNOG-mapper	UHGV-0157403_8	411470.RUMGNA_02225	203.0	0	N/A	N/A
Pfam	UHGV-0157403_8	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0157403_8	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_9	phrog_3099	153.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0157403_9	411470.RUMGNA_02224	286.0	0	N/A	N/A
structural_annotation	UHGV-0157403_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_10	phrog_3266	156.7	0	tail completion	connector
UniRef90	UHGV-0157403_10	UniRef90_UPI001F2730AA	138.0	2.72e-39	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0157403_10	411470.RUMGNA_02223	277.0	0	N/A	N/A
structural_annotation	UHGV-0157403_10	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_11	phrog_556	140.5	4.60046e-42	minor head protein	head and packaging
UniRef90	UHGV-0157403_11	UniRef90_UPI001C8E2A32	220.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0157403_11	411470.RUMGNA_02222	219.0	0	N/A	N/A
structural_annotation	UHGV-0157403_11	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_12	phrog_3366	97.3	5.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0157403_12	411470.RUMGNA_02221	215.0	0	N/A	N/A
Pfam	UHGV-0157403_12	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0157403_12	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_13	phrog_541	99.2	3.2e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0157403_13	658655.HMPREF0988_02559	201.0	0	N/A	N/A
PHROG	UHGV-0157403_14	phrog_422	211.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0157403_14	411470.RUMGNA_02219	528.0	0	N/A	N/A
structural_annotation	UHGV-0157403_14	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_15	phrog_194	107.8	1.2e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0157403_15	UniRef90_A5KPA4	293.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0157403_15	658655.HMPREF0988_02561	304.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0157403_15	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0157403_15	PF06810	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0157403_16	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0157403_16	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157403_18	411470.RUMGNA_02215	120.0	4.94e-27	N/A	N/A
eggNOG-mapper	UHGV-0157403_19	411470.RUMGNA_02214	170.0	0	N/A	N/A
structural_annotation	UHGV-0157403_19	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_20	phrog_581	345.1	0	minor head protein	head and packaging
UniRef90	UHGV-0157403_20	UniRef90_UPI001EE14397	675.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0157403_20	658655.HMPREF0988_02563	652.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0157403_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0157403_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157403_20	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_21	phrog_533	339.5	0	portal protein	head and packaging
UniRef90	UHGV-0157403_21	UniRef90_A7B3T1	874.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0157403_21	411470.RUMGNA_02212	874.0	0	N/A	N/A
structural_annotation	UHGV-0157403_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0157403_22	K06909	84.4	1.7e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0157403_22	phrog_2	88.1	1.6e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0157403_22	UniRef90_A7B3T0	843.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0157403_22	411470.RUMGNA_02211	843.0	0	N/A	N/A
Pfam	UHGV-0157403_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0157403_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0157403_22	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_23	phrog_309	150.4	4.2039e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0157403_23	UniRef90_UPI001D05A70C	239.0	0	transposase	N/A
eggNOG-mapper	UHGV-0157403_23	411470.RUMGNA_02210	181.0	0	transposase activity	N/A
Pfam	UHGV-0157403_23	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0157403_23	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0157403_23	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_25	phrog_8680	249.1	0	N/A	unknown function
UniRef90	UHGV-0157403_25	UniRef90_UPI00073EEAD0	375.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157403_25	411470.RUMGNA_02208	362.0	0	N/A	N/A
Pfam	UHGV-0157403_25	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0157403_25	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_26	phrog_36	67.5	2.4e-19	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0157403_26	742765.HMPREF9457_02116	162.0	0	N/A	N/A
structural_annotation	UHGV-0157403_26	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_29	phrog_10714	48.6	0.00000000000013	N/A	unknown function
KOfam	UHGV-0157403_30	K00571	113.0	3.7e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0157403_30	phrog_67	95.2	3.9e-28	DNA methyltransferase	other
UniRef90	UHGV-0157403_30	UniRef90_A0A3A5TEY8	588.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0157403_30	658655.HMPREF0988_00878	501.0	0	DNA methylase	N/A
PADLOC	UHGV-0157403_30	MTase_II_00157	93.3	4.1e-27	Type II methyltransferase	RM
Pfam	UHGV-0157403_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0157403_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0157403_30	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157403_32	PF17399	N/A	N/A	N/A	N/A
KOfam	UHGV-0157403_33	K02315	176.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0157403_33	phrog_50	172.8	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157403_33	UniRef90_S2ZLG6	534.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157403_33	476272.RUMHYD_03359	228.0	0	DNA-dependent DNA replication	N/A
Pfam	UHGV-0157403_33	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0157403_33	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0157403_33	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_34	phrog_10469	224.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157403_34	UniRef90_S2YJX3	527.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0157403_34	397288.C806_03002	284.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0157403_34	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0157403_34	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0157403_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0157403_34	PF09681,TIGR01714,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0157403_35	K01160	56.6	8.2e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0157403_35	phrog_140	133.0	1.5e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157403_35	UniRef90_A7B3R6	211.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0157403_35	411470.RUMGNA_02196	211.0	0	COG COG4570 Holliday junction resolvase	N/A
Pfam	UHGV-0157403_35	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0157403_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-0157403_36	phrog_7566	57.1	3.2e-16	N/A	unknown function
UniRef90	UHGV-0157403_36	UniRef90_A0A3A5TWB4	155.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0157403_37	411490.ANACAC_00804	140.0	2.88e-39	N/A	N/A
structural_annotation	UHGV-0157403_37	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_38	phrog_14970	284.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0157403_38	411468.CLOSCI_00315	249.0	0	double-strand break repair protein	N/A
COG	UHGV-0157403_38	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0157403_38	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_41	phrog_5070	142.3	1.69978e-42	N/A	unknown function
UniRef90	UHGV-0157403_41	UniRef90_A0A174CB23	144.0	5.84e-40	Predicted acyltransferase	N/A
eggNOG-mapper	UHGV-0157403_41	411470.RUMGNA_02189	164.0	0	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0157403_41	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0157403_41	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
KOfam	UHGV-0157403_44	K07741	132.4	8.5e-39	antB; anti-repressor protein	N/A
PHROG	UHGV-0157403_44	phrog_130	264.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0157403_44	UniRef90_UPI001C3B87F0	409.0	0	Phage antirepressor	N/A
eggNOG-mapper	UHGV-0157403_44	1232452.BAIB02000007_gene1603	343.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0157403_44	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0157403_44	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0157403_44	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0157403_44	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157403_45	1235790.C805_00014	46.6	0.00000262	N/A	N/A
PHROG	UHGV-0157403_46	phrog_2211	42.2	0.000000000012	N/A	unknown function
KOfam	UHGV-0157403_50	K18830	44.6	0.0000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0157403_50	phrog_8	46.8	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157403_50	UniRef90_UPI001D04C7E1	177.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0157403_50	1235790.C805_00012	123.0	1.16e-34	Helix-turn-helix domain	N/A
Pfam	UHGV-0157403_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157403_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157403_50	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0157403_52	phrog_7974	57.8	1.3e-16	N/A	unknown function
UniRef90	UHGV-0157403_52	UniRef90_A7B3P6	429.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157403_52	411470.RUMGNA_02177	429.0	0	belongs to the thioredoxin family	N/A
Pfam	UHGV-0157403_52	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0157403_52	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0157403_52	PF14020,PF02368,COG1721	N/A	N/A	N/A	N/A
KOfam	UHGV-0157403_53	K14059	70.0	3e-20	int; integrase	N/A
PHROG	UHGV-0157403_53	phrog_1	105.9	2.5e-31	integrase	integration and excision
UniRef90	UHGV-0157403_53	UniRef90_S2ZG06	761.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0157403_53	1235792.C808_05256	457.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0157403_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0157403_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0157403_53	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A