UHGV-0157721 (vOTU-010662)

Viral Genome: UHGV-0157721

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0157721
vOTU ID	vOTU-010662
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_449790
Associated BioSample	SAMN05971719
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9699
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.78
Jumbo phage	No

Genome content
Genome length (bp)	38,790
GC content	39.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	89%
Average CDS length (bps)	614.89
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0157721_1	UniRef90_S2ZLJ4	85.5	3.84e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_1	411470.RUMGNA_03786	82.4	1.48e-18	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0157721_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0157721_3	1232453.BAIF02000002_gene1276	58.2	0.00000000011	N/A	N/A
structural_annotation	UHGV-0157721_3	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_5	phrog_34107	92.7	2.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0157721_5	1235800.C819_00521	95.5	2.94e-23	N/A	N/A
PHROG	UHGV-0157721_11	phrog_1220	211.5	0	head protein	head and packaging
UniRef90	UHGV-0157721_11	UniRef90_A0A2X0ZY62	135.0	5.74e-34	Phage structural protein, truncation	N/A
eggNOG-mapper	UHGV-0157721_11	1145276.T479_19910	145.0	7.42e-39	N/A	N/A
structural_annotation	UHGV-0157721_11	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_12	phrog_538	198.7	0	minor tail protein	tail
UniRef90	UHGV-0157721_12	UniRef90_UPI0004813F81	204.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0157721_12	742740.HMPREF9474_02260	189.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0157721_12	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0157721_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_13	phrog_33	73.8	4.3e-21	distal tail protein Dit	tail
UniRef90	UHGV-0157721_13	UniRef90_A0A6N7STN1	227.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0157721_13	411460.RUMTOR_01334	125.0	4.02e-31	COG NOG18823 non supervised orthologous group	N/A
Pfam	UHGV-0157721_13	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0157721_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0157721_13	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_14	phrog_1272	382.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0157721_14	UniRef90_A0A6N7SRV7	308.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_14	588581.Cpap_1264	281.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0157721_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0157721_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0157721_14	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_16	phrog_88	96.5	2.8e-28	major tail protein	tail
UniRef90	UHGV-0157721_16	UniRef90_A0A843HLZ4	138.0	1.3e-35	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_16	1246626.BleG1_2876	86.3	2.98e-18	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0157721_16	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0157721_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0157721_16	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157721_17	PF05657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157721_18	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_19	phrog_25	42.0	0.000000000017	head closure Hc1	connector
UniRef90	UHGV-0157721_19	UniRef90_R7FBN9	140.0	7.50003e-41	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0157721_19	1536774.H70357_10645	60.5	0.000000000392	N/A	N/A
Pfam	UHGV-0157721_19	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0157721_19	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0157721_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157721_20	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_21	phrog_10	105.3	8.2e-31	major head protein	head and packaging
UniRef90	UHGV-0157721_21	UniRef90_UPI00069461CE	560.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0157721_21	1157490.EL26_20710	276.0	0	Phage capsid family	N/A
Pfam	UHGV-0157721_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0157721_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0157721_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0157721_21	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_22	K06904	109.8	3.6e-32	N/A	N/A
PHROG	UHGV-0157721_22	phrog_80	139.4	3.50002e-41	head maturation protease	head and packaging
UniRef90	UHGV-0157721_22	UniRef90_UPI00156EFB92	286.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0157721_22	927704.SELR_18200	214.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0157721_22	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0157721_22	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0157721_22	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0157721_22	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_23	phrog_12	131.1	7.3e-39	portal protein	head and packaging
UniRef90	UHGV-0157721_23	UniRef90_A0A6N2W8E6	519.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0157721_23	1157490.EL26_20720	356.0	0	Phage portal protein	N/A
Pfam	UHGV-0157721_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0157721_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0157721_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_24	phrog_9	263.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0157721_24	UniRef90_UPI00156FA9A2	889.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0157721_24	642492.Clole_1855	545.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0157721_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0157721_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0157721_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0157721_24	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_26	phrog_4581	111.3	7.7e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0157721_26	UniRef90_A0A6N7SRM8	308.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_26	97138.C820_00619	191.0	0	HNH endonuclease	N/A
Pfam	UHGV-0157721_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0157721_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0157721_26	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_27	phrog_4636	214.2	0	tail spike protein	tail
eggNOG-mapper	UHGV-0157721_27	1403313.AXBR01000002_gene4314	192.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-0157721_27	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0157721_27	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0157721_28	phrog_309	105.3	5.1e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0157721_28	UniRef90_A0A3D0FZE1	106.0	3.41e-26	Transposase	N/A
eggNOG-mapper	UHGV-0157721_28	1408437.JNJN01000045_gene597	77.0	0.00000000000000165	HNH endonuclease	N/A
COG	UHGV-0157721_28	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0157721_28	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_29	K02395	40.4	0.000000000059	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0157721_29	phrog_3513	94.4	1.3e-27	endolysin	lysis
UniRef90	UHGV-0157721_29	UniRef90_A0A3A9T4U3	189.0	0	LYZ2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_29	1408324.JNJK01000006_gene1400	175.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0157721_29	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0157721_29	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0157721_29	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0157721_29	PF01471,PF01832,NF038016,COG1705,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_30	phrog_1863	73.4	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0157721_30	1232453.BAIF02000059_gene1610	77.4	4.94e-18	N/A	N/A
PHROG	UHGV-0157721_31	phrog_1129	67.9	1.1e-19	holin	lysis
UniRef90	UHGV-0157721_31	UniRef90_UPI0013F5D614	117.0	1.86e-32	phage holin family protein	N/A
eggNOG-mapper	UHGV-0157721_31	411461.DORFOR_00721	122.0	3.06e-35	N/A	N/A
Pfam	UHGV-0157721_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0157721_31	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_32	K07727	52.9	0.000000000000011	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0157721_32	UniRef90_S0J8W4	103.0	1.59e-27	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_32	1235790.C805_03092	103.0	2.66e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0157721_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0157721_32	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0157721_32	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157721_34	UniRef90_R7F9V4	115.0	1.82e-30	Putative RNA polymerase sigma factor sigma-F	N/A
eggNOG-mapper	UHGV-0157721_34	138119.DSY2187	54.7	0.000000233	DNA-templated transcription, initiation	N/A
COG	UHGV-0157721_34	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0157721_34	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_35	K00571	90.9	1.7e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0157721_35	phrog_23224	118.5	2.8e-37	DNA methyltransferase	other
UniRef90	UHGV-0157721_35	UniRef90_UPI0008494978	414.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0157721_35	411154.GFO_2469	301.0	0	DNA methylase	N/A
PADLOC	UHGV-0157721_35	MTase_II_00172	139.0	3.80004e-41	Type II methyltransferase	RM
Pfam	UHGV-0157721_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0157721_35	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0157721_35	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157721_36	1235798.C817_04576	85.5	8.64e-20	N/A	N/A
PHROG	UHGV-0157721_41	phrog_13489	48.2	0.00000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0157721_41	1158601.I585_01174	68.2	0.00000000000022	N/A	N/A
PHROG	UHGV-0157721_44	phrog_4068	54.6	0.0000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0157721_44	178901.AmDm5_1358	47.8	0.00000457	N/A	N/A
structural_annotation	UHGV-0157721_44	PF19757,NF038178	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_45	K03497	69.3	3.6e-20	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0157721_45	phrog_15982	509.5	0	N/A	unknown function
UniRef90	UHGV-0157721_45	UniRef90_R9K3A6	406.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_45	1232453.BAIF02000028_gene2716	418.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0157721_45	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0157721_45	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0157721_45	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0157721_45	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_46	K03496	157.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0157721_46	phrog_164	151.9	4.2039e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157721_46	UniRef90_A0A7U9NG21	379.0	0	Chromosome partitioning protein ParA	N/A
eggNOG-mapper	UHGV-0157721_46	1235792.C808_00063	368.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0157721_46	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0157721_46	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0157721_46	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157721_47	UniRef90_UPI00164A90AD	113.0	4.07e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0157721_47	1235800.C819_02254	118.0	7.7e-33	HNH nucleases	N/A
KOfam	UHGV-0157721_48	K03698	43.1	0.0000000000066	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0157721_48	phrog_5889	91.8	6.2e-27	N/A	unknown function
UniRef90	UHGV-0157721_48	UniRef90_A0A1C5UD48	200.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-0157721_48	1219626.HMPREF1639_07345	178.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
Pfam	UHGV-0157721_48	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-0157721_48	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0157721_48	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_49	K03469	59.1	1e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0157721_49	phrog_531	53.5	0.0000000000000049	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157721_49	UniRef90_A0A3E3J0L4	155.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157721_49	411902.CLOBOL_05701	144.0	1.90997e-42	RNase H	N/A
Pfam	UHGV-0157721_49	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0157721_49	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0157721_49	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_50	phrog_3584	272.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157721_50	UniRef90_A0A4P8IFK4	398.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157721_50	1235798.C817_02593	335.0	0	N/A	N/A
structural_annotation	UHGV-0157721_50	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0157721_52	phrog_36464	75.0	1.1e-21	N/A	unknown function
UniRef90	UHGV-0157721_52	UniRef90_R6QN85	86.3	9.7e-21	50S ribosomal protein L11 domain protein	N/A
eggNOG-mapper	UHGV-0157721_52	742740.HMPREF9474_03484	68.9	0.0000000000000116	N/A	N/A
structural_annotation	UHGV-0157721_52	PF09035	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157721_54	UniRef90_A0A3A9C4G4	80.1	4.33e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0157721_54	97139.C824_00059	87.4	7.92e-22	N/A	N/A
structural_annotation	UHGV-0157721_54	PF13443,NF010465,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_55	K01356	59.8	6.3e-17	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0157721_55	phrog_4	94.5	1.7e-27	transcriptional repressor	transcription regulation
UniRef90	UHGV-0157721_55	UniRef90_A0A7U9S4E0	226.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0157721_55	1235793.C809_01937	187.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0157721_55	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0157721_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157721_55	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0157721_56	K14059	144.9	1.10002e-42	int; integrase	N/A
PHROG	UHGV-0157721_56	phrog_1	135.3	6e-40	integrase	integration and excision
UniRef90	UHGV-0157721_56	UniRef90_A0A7G9G722	348.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0157721_56	887325.HMPREF0381_0117	347.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0157721_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0157721_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0157721_56	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A