UHGV-0158628 (vOTU-134133)

Viral Genome: UHGV-0158628

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0158628
vOTU ID	vOTU-134133
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_453937
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.45 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.972
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.99
Jumbo phage	No

Genome content
Genome length (bp)	33,725
GC content	41.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	92%
Average CDS length (bps)	583.42
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0158628_1	K11062	90.7	1.2e-26	entD; probable enterotoxin D	N/A
PHROG	UHGV-0158628_1	phrog_3088	171.4	0	amidase	lysis
UniRef90	UHGV-0158628_1	UniRef90_A0A414EG98	793.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0158628_1	411459.RUMOBE_00909	748.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0158628_1	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0158628_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0158628_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0158628_1	PF01832,NF008758,NF009354,COG5632,COG4193	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_2	phrog_18218	139.2	1.10002e-41	N/A	unknown function
UniRef90	UHGV-0158628_2	UniRef90_UPI001C0EBFB3	178.0	0	ribonuclease	N/A
eggNOG-mapper	UHGV-0158628_2	411459.RUMOBE_00910	188.0	0	N/A	N/A
structural_annotation	UHGV-0158628_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_3	phrog_4105	90.2	1.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0158628_3	411459.RUMOBE_00911	194.0	0	N/A	N/A
structural_annotation	UHGV-0158628_4	PF14400,NF012201	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0158628_6	PF07703,NF038114,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_7	phrog_32322	55.1	0.0000000000000012	N/A	unknown function
UniRef90	UHGV-0158628_7	UniRef90_UPI00164A17D5	239.0	0	PF13754 domain-containing protein	N/A
eggNOG-mapper	UHGV-0158628_7	411461.DORFOR_01183	70.5	0.0000000000000322	N/A	N/A
Pfam	UHGV-0158628_7	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-0158628_7	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-0158628_8	K13276	69.8	4.5e-21	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0158628_8	phrog_11157	288.2	0	N/A	unknown function
UniRef90	UHGV-0158628_8	UniRef90_UPI00189E1472	550.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0158628_8	33035.JPJF01000023_gene3227	411.0	0	N/A	N/A
Pfam	UHGV-0158628_8	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0158628_8	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0158628_8	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0158628_8	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0158628_9	1121866.AUGK01000003_gene1445	81.6	4.18e-16	N/A	N/A
Pfam	UHGV-0158628_9	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-0158628_10	phrog_6616	462.8	0	tail protein	tail
UniRef90	UHGV-0158628_10	UniRef90_A0A414EG21	1538.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0158628_10	1121866.AUGK01000003_gene1439	243.0	0	Phage minor structural protein	N/A
COG	UHGV-0158628_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0158628_10	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_11	phrog_1194	69.5	4.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0158628_11	33035.JPJF01000093_gene2242	157.0	0	N/A	N/A
structural_annotation	UHGV-0158628_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_12	phrog_1535	501.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0158628_12	UniRef90_A0A1C5RGR7	1209.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0158628_12	33035.JPJF01000093_gene2243	772.0	0	phage tail tape measure protein	N/A
COG	UHGV-0158628_12	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0158628_12	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_13	phrog_8355	96.4	1.2e-28	N/A	unknown function
UniRef90	UHGV-0158628_13	UniRef90_UPI001F2CFAB2	156.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0158628_13	483218.BACPEC_01147	85.5	6.11e-21	Bacteriophage Gp15 protein	N/A
structural_annotation	UHGV-0158628_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_14	phrog_8300	86.4	2.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0158628_14	33035.JPJF01000093_gene2245	65.5	0.00000000000153	N/A	N/A
structural_annotation	UHGV-0158628_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_15	phrog_820	110.6	9.2e-33	major tail protein	tail
eggNOG-mapper	UHGV-0158628_15	33035.JPJF01000093_gene2246	186.0	0	N/A	N/A
structural_annotation	UHGV-0158628_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_16	phrog_2595	92.9	3e-27	head-tail connector protein	connector
UniRef90	UHGV-0158628_16	UniRef90_UPI001C0EB705	234.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0158628_16	483218.BACPEC_01150	129.0	1.41e-36	N/A	N/A
Pfam	UHGV-0158628_16	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0158628_16	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_17	phrog_556	55.0	0.0000000000000014	minor head protein	head and packaging
eggNOG-mapper	UHGV-0158628_17	742740.HMPREF9474_03509	170.0	0	N/A	N/A
PHROG	UHGV-0158628_18	phrog_8710	134.0	4.6e-40	N/A	unknown function
eggNOG-mapper	UHGV-0158628_18	742740.HMPREF9474_03508	138.0	6.70998e-41	N/A	N/A
structural_annotation	UHGV-0158628_18	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_19	phrog_541	90.5	1.6e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0158628_19	1298920.KI911353_gene4848	206.0	0	N/A	N/A
PHROG	UHGV-0158628_20	phrog_422	280.0	0	major head protein	head and packaging
UniRef90	UHGV-0158628_20	UniRef90_A0A414EG86	647.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0158628_20	663278.Ethha_1589	396.0	0	N/A	N/A
structural_annotation	UHGV-0158628_20	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_21	phrog_2303	160.9	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0158628_21	1304866.K413DRAFT_0806	175.0	0	N/A	N/A
PHROG	UHGV-0158628_23	phrog_478	116.0	1.9e-34	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0158628_23	UniRef90_R6R5K5	132.0	2.58e-37	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0158628_23	521003.COLINT_02327	131.0	8.7e-38	N/A	N/A
PHROG	UHGV-0158628_24	phrog_1048	171.5	0	N/A	unknown function
UniRef90	UHGV-0158628_24	UniRef90_A0A373P4J3	292.0	0	N/A	N/A
eggNOG-mapper	UHGV-0158628_24	457412.RSAG_01107	274.0	0	N/A	N/A
Pfam	UHGV-0158628_24	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0158628_24	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0158628_24	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0158628_26	1423724.BAMM01000020_gene1767	111.0	1.13e-27	N/A	N/A
KOfam	UHGV-0158628_28	K07741	86.8	6.7e-25	antB; anti-repressor protein	N/A
PHROG	UHGV-0158628_28	phrog_9438	152.1	1.4013e-45	anti-repressor	transcription regulation
UniRef90	UHGV-0158628_28	UniRef90_UPI000E507582	241.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0158628_28	658655.HMPREF0988_02592	209.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0158628_28	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0158628_28	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0158628_28	PF03374,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0158628_30	UniRef90_UPI001A185102	103.0	1.12e-27	LLM class flavin-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0158628_30	588581.Cpap_1508	89.7	5.96e-23	N/A	N/A
structural_annotation	UHGV-0158628_30	PF20075,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_32	phrog_17690	132.9	1.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0158628_32	476272.RUMHYD_03925	199.0	0	N/A	N/A
KOfam	UHGV-0158628_34	K01160	43.6	0.0000000000083	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0158628_34	phrog_140	92.0	7.4e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0158628_34	UniRef90_A0A414EG57	251.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0158628_34	1235792.C808_05386	212.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0158628_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0158628_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0158628_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_35	phrog_16687	91.7	4.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0158628_35	1123511.KB905868_gene197	52.4	0.0000000716	N/A	N/A
KOfam	UHGV-0158628_36	K07505	426.7	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0158628_36	phrog_2597	1223.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0158628_36	UniRef90_A0A414EG95	1494.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0158628_36	411462.DORLON_00808	1085.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0158628_36	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0158628_36	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0158628_36	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0158628_36	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0158628_37	K17677	354.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0158628_37	phrog_16	287.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0158628_37	UniRef90_UPI001C0EDFF6	1001.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-0158628_37	411462.DORLON_00809	911.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0158628_37	mREase_IV_00005	137.8	9.79998e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0158628_37	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0158628_37	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0158628_37	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0158628_37	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_38	phrog_2698	169.5	0	N/A	unknown function
UniRef90	UHGV-0158628_38	UniRef90_A0A414EG49	298.0	0	N/A	N/A
eggNOG-mapper	UHGV-0158628_38	478749.BRYFOR_07585	169.0	0	N/A	N/A
Pfam	UHGV-0158628_38	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0158628_38	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_39	phrog_124	254.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0158628_39	UniRef90_UPI001C0F250F	685.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0158628_39	411462.DORLON_00811	457.0	0	AAA domain	N/A
Pfam	UHGV-0158628_39	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0158628_39	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0158628_40	K03546	62.0	7.9e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0158628_40	phrog_1499	506.1	0	N/A	unknown function
UniRef90	UHGV-0158628_40	UniRef90_A0A414EG91	797.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0158628_40	411462.DORLON_00812	594.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0158628_40	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0158628_40	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0158628_40	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_42	phrog_6058	52.0	0.0000000000000079	N/A	unknown function
UniRef90	UHGV-0158628_42	UniRef90_A0A2V1JQ38	61.2	0.000000000327	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0158628_42	742733.HMPREF9469_05094	66.6	0.000000000000422	N/A	N/A
UniRef90	UHGV-0158628_44	UniRef90_A0A414EGH7	145.0	2.10195e-44	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0158628_44	1235792.C808_05261	52.4	0.0000000448	N/A	N/A
structural_annotation	UHGV-0158628_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0158628_45	UniRef90_A0A414EGA2	210.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0158628_45	1235798.C817_00736	99.0	3.61e-25	addiction module antidote protein HigA	N/A
COG	UHGV-0158628_45	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0158628_45	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_46	phrog_27136	163.4	0	N/A	unknown function
UniRef90	UHGV-0158628_46	UniRef90_UPI001CED3949	459.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0158628_46	1282664.H354_06486	136.0	7.98e-37	Short C-terminal domain	N/A
eggNOG-mapper	UHGV-0158628_47	457412.RSAG_01053	134.0	3.38e-40	N/A	N/A
UniRef90	UHGV-0158628_48	UniRef90_A0A414EGB5	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-0158628_48	657322.FPR_11180	151.0	0	N/A	N/A
Pfam	UHGV-0158628_48	PF13711	N/A	N/A	N/A	DUF4160
PHROG	UHGV-0158628_49	phrog_87	79.3	3.8e-23	metallo-protease	other
UniRef90	UHGV-0158628_49	UniRef90_A0A414EG59	315.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0158628_49	457412.RSAG_00798	200.0	0	Zn peptidase	N/A
Pfam	UHGV-0158628_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0158628_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0158628_49	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_50	phrog_7395	150.4	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0158628_50	UniRef90_A0A416Q226	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0158628_50	1168067.JAGP01000001_gene1216	119.0	4.3e-32	N/A	N/A
Pfam	UHGV-0158628_50	PF14015	N/A	N/A	N/A	DUF4231
NCBIFam	UHGV-0158628_50	NF033634.1	N/A	N/A	SLATT domain-containing protein	N/A
structural_annotation	UHGV-0158628_50	PF14015,NF033634	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_51	phrog_419	77.8	1.4e-24	N/A	unknown function
UniRef90	UHGV-0158628_51	UniRef90_UPI001CF863AC	109.0	3.18e-30	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0158628_51	203119.Cthe_2457	111.0	7.4e-32	N/A	N/A
Pfam	UHGV-0158628_51	PF14083	N/A	N/A	PGDYG protein	PGDYG
structural_annotation	UHGV-0158628_51	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0158628_52	phrog_6988	137.1	6.09999e-41	N/A	unknown function
UniRef90	UHGV-0158628_52	UniRef90_A0A173WRJ1	288.0	0	N/A	N/A
eggNOG-mapper	UHGV-0158628_52	203119.Cthe_2456	139.0	1.55e-40	N/A	N/A
PADLOC	UHGV-0158628_52	ThsB1_00002	44.2	0.0000000000035	TIR-like	Thoeris
Pfam	UHGV-0158628_52	PF08937	N/A	N/A	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
structural_annotation	UHGV-0158628_52	PF08937,MF_03036,TIGR03646,COG0758	N/A	N/A	N/A	N/A
KOfam	UHGV-0158628_53	K14059	101.0	1.8e-29	int; integrase	N/A
PHROG	UHGV-0158628_53	phrog_1	121.6	8.6e-36	integrase	integration and excision
UniRef90	UHGV-0158628_53	UniRef90_A0A414EG15	807.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0158628_53	1235792.C808_05256	353.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0158628_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0158628_53	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A