UHGV-0159412 (vOTU-085188)

Viral Genome: UHGV-0159412

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0159412
vOTU ID	vOTU-085188
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_457677
Associated BioSample	SAMN05971437
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.95 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9675
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.91
Jumbo phage	No

Genome content
Genome length (bp)	32,857
GC content	51.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	96%
Average CDS length (bps)	603.75
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0159412_1	K14059	148.3	9.66896e-44	int; integrase	N/A
PHROG	UHGV-0159412_1	phrog_1	181.8	0	integrase	integration and excision
UniRef90	UHGV-0159412_1	UniRef90_A0A7K4BXA9	279.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0159412_1	693746.OBV_19730	237.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0159412_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0159412_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0159412_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0159412_3	K01356	104.3	1.9e-30	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0159412_3	phrog_4	113.9	1.8e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-0159412_3	UniRef90_A0A6N9NXR9	193.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0159412_3	634956.Geoth_0743	85.9	7.39e-18	Peptidase S24-like	N/A
Pfam	UHGV-0159412_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0159412_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0159412_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0159412_3	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159412_4	UniRef90_A0A2N0ULV0	79.0	1.77e-17	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0159412_4	1211844.CBLM010000016_gene1521	52.4	0.0000000816	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0159412_4	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
PHROG	UHGV-0159412_5	phrog_6058	45.0	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0159412_5	693746.OBV_19810	52.0	0.000000309	N/A	N/A
KOfam	UHGV-0159412_7	K01449	57.9	1.8e-16	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0159412_7	phrog_18750	151.1	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0159412_7	UniRef90_A0A3D5TM41	213.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0159412_7	1203606.HMPREF1526_01876	142.0	3.23001e-40	Cell wall hydrolase	N/A
Pfam	UHGV-0159412_7	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0159412_7	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0159412_7	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159412_9	UniRef90_A0A2V2EEG3	77.8	0.0000000000000176	N/A	N/A
eggNOG-mapper	UHGV-0159412_9	665950.HMPREF1025_02540	69.7	0.00000000000962	N/A	N/A
Pfam	UHGV-0159412_9	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0159412_10	phrog_22040	45.0	0.0000000000015	N/A	unknown function
structural_annotation	UHGV-0159412_10	PF07073,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_14	phrog_824	132.6	1.3e-39	N/A	unknown function
UniRef90	UHGV-0159412_14	UniRef90_A0A3D5TLJ2	330.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0159412_14	1235792.C808_00075	141.0	2.9e-39	VRR_NUC	N/A
Pfam	UHGV-0159412_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0159412_14	PF08774,COG1996	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_15	phrog_3777	79.2	2.7e-23	N/A	unknown function
UniRef90	UHGV-0159412_15	UniRef90_A0A417F5N7	109.0	2.22e-28	N/A	N/A
eggNOG-mapper	UHGV-0159412_15	1504823.CCMM01000006_gene385	80.1	1.24e-16	Antirestriction protein (ArdA)	N/A
Pfam	UHGV-0159412_15	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0159412_15	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
KOfam	UHGV-0159412_16	K03497	147.8	1.4013e-43	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0159412_16	phrog_6218	248.1	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159412_16	UniRef90_A0A3D1I1E6	761.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0159412_16	445972.ANACOL_00162	254.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0159412_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0159412_16	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0159412_16	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0159412_16	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
Pfam	UHGV-0159412_20	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0159412_20	PF14354,NF007260	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0159412_22	1235790.C805_00069	64.7	0.00000000000228	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0159412_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0159412_23	phrog_24518	46.0	0.00000000000074	N/A	unknown function
eggNOG-mapper	UHGV-0159412_23	693746.OBV_25370	82.0	6.93e-17	N/A	N/A
PHROG	UHGV-0159412_24	phrog_3584	129.7	1.9e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0159412_24	537013.CLOSTMETH_02141	79.0	0.00000000000000319	N/A	N/A
structural_annotation	UHGV-0159412_24	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_25	phrog_954	162.0	0	DNA methyltransferase	other
UniRef90	UHGV-0159412_25	UniRef90_A0A498CN80	196.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0159412_25	1280698.AUJS01000007_gene1028	192.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0159412_25	MTase_II_00074	179.5	0	Type II methyltransferase	RM
Pfam	UHGV-0159412_25	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0159412_25	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0159412_25	PF05148,MF_01057,NF011527,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_26	phrog_11237	79.0	6.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0159412_26	537013.CLOSTMETH_01096	59.7	0.00000000106	N/A	N/A
structural_annotation	UHGV-0159412_26	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0159412_27	K00571	161.1	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0159412_27	phrog_12862	168.0	0	N/A	unknown function
UniRef90	UHGV-0159412_27	UniRef90_UPI000A26DFF4	330.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0159412_27	1120998.AUFC01000030_gene2227	314.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0159412_27	MTase_II_00037	148.0	0	Type II methyltransferase	RM
Pfam	UHGV-0159412_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0159412_27	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0159412_27	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0159412_28	K07451	48.7	0.00000000000014	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0159412_28	phrog_144	107.0	1.5e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159412_28	UniRef90_UPI0006D7C695	94.4	3.45e-22	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0159412_28	1508644.SFBmNL_01550	88.2	9.02e-21	HNH endonuclease	N/A
Pfam	UHGV-0159412_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0159412_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0159412_28	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_29	phrog_83	83.1	3.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0159412_29	UniRef90_UPI00067FA7FA	132.0	1.76e-36	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0159412_29	1567013.A0A0A7S0C4_9CAUD	129.0	3.79e-36	Phage terminase, small subunit	N/A
Pfam	UHGV-0159412_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0159412_29	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
structural_annotation	UHGV-0159412_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_30	phrog_9	331.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0159412_30	UniRef90_UPI000C7CE66A	718.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0159412_30	742738.HMPREF9460_04067	649.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0159412_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0159412_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0159412_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0159412_30	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_31	phrog_12	275.2	0	portal protein	head and packaging
UniRef90	UHGV-0159412_31	UniRef90_UPI000C7BDACF	486.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0159412_31	634956.Geoth_0787	431.0	0	Phage portal protein	N/A
Pfam	UHGV-0159412_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0159412_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0159412_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0159412_31	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_32	phrog_16951	255.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0159412_32	246199.CUS_7602	191.0	0	N/A	N/A
structural_annotation	UHGV-0159412_32	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_33	phrog_10	159.2	0	major head protein	head and packaging
UniRef90	UHGV-0159412_33	UniRef90_UPI000C7BECD8	313.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0159412_33	1414720.CBYM010000002_gene572	233.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0159412_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0159412_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0159412_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0159412_33	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_34	phrog_40	40.7	0.000000000035	head-tail adaptor Ad1	connector
UniRef90	UHGV-0159412_34	UniRef90_UPI0006544DF9	53.5	0.000000237	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0159412_34	1274524.BSONL12_06143	48.1	0.000008	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0159412_34	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0159412_34	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0159412_34	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_35	phrog_1951	48.7	0.00000000000013	head-tail adaptor	connector
eggNOG-mapper	UHGV-0159412_35	457396.CSBG_01051	53.9	0.0000000567	head-tail adaptor	N/A
Pfam	UHGV-0159412_35	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0159412_35	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
UniRef90	UHGV-0159412_36	UniRef90_A0A174CK72	98.2	1.97e-23	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0159412_36	1195236.CTER_5108	84.3	7.46e-19	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0159412_36	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_37	phrog_78	51.6	0.000000000000019	tail terminator	connector
eggNOG-mapper	UHGV-0159412_37	1238184.CM001792_gene2512	75.5	3.57e-16	N/A	N/A
structural_annotation	UHGV-0159412_37	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_38	phrog_88	79.1	5.6e-23	major tail protein	tail
UniRef90	UHGV-0159412_38	UniRef90_UPI001D07B441	135.0	1.18e-36	major tail protein	N/A
eggNOG-mapper	UHGV-0159412_38	411459.RUMOBE_00930	123.0	9.85e-33	N/A	N/A
NCBIFam	UHGV-0159412_38	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0159412_38	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0159412_39	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_40	phrog_58	98.8	6.7e-34	tail length tape measure protein	tail
UniRef90	UHGV-0159412_40	UniRef90_A0A316QKN8	292.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0159412_40	1230342.CTM_17027	271.0	0	tape measure	N/A
COG	UHGV-0159412_40	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0159412_40	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_41	phrog_33	63.3	6.6e-18	distal tail protein Dit	tail
UniRef90	UHGV-0159412_41	UniRef90_UPI00164BA811	138.0	1.26e-36	phage tail family protein	N/A
eggNOG-mapper	UHGV-0159412_41	1444306.JFZC01000034_gene2623	150.0	3.30006e-42	tail component	N/A
COG	UHGV-0159412_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0159412_41	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_42	phrog_1067	355.0	0	minor head protein	head and packaging
UniRef90	UHGV-0159412_42	UniRef90_R6GLF8	342.0	0	Phage minor structural protein region	N/A
eggNOG-mapper	UHGV-0159412_42	1160721.RBI_I01574	317.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0159412_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0159412_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0159412_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0159412_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0159412_44	K08131	53.0	0.0000000000000015	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0159412_44	phrog_11541	92.1	2.3e-27	N/A	unknown function
UniRef90	UHGV-0159412_44	UniRef90_UPI00068310FF	188.0	0	SGNH/GDSL hydrolase family protein	N/A
Pfam	UHGV-0159412_44	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0159412_44	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
structural_annotation	UHGV-0159412_45	PF02973	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_48	phrog_27545	85.3	8.1e-25	N/A	unknown function
UniRef90	UHGV-0159412_48	UniRef90_R6ELD6	92.0	7.65e-22	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0159412_48	411471.SUBVAR_06976	87.8	7.26e-21	N/A	N/A
KOfam	UHGV-0159412_49	K01448	118.4	7.4e-35	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0159412_49	phrog_435	138.7	5.60001e-41	endolysin	lysis
UniRef90	UHGV-0159412_49	UniRef90_R6HWJ2	634.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0159412_49	1203606.HMPREF1526_00346	112.0	1.07e-26	Ami_3	N/A
Pfam	UHGV-0159412_49	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0159412_49	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0159412_49	PF01520,PF15591,MF_00562,TIGR02883,NF033202,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0159412_50	phrog_1863	77.4	9.6e-23	N/A	unknown function
UniRef90	UHGV-0159412_50	UniRef90_A0A2K9NYV1	85.1	3.18e-20	Holin	N/A
eggNOG-mapper	UHGV-0159412_50	428125.CLOLEP_01781	89.7	6.92e-23	N/A	N/A
PHROG	UHGV-0159412_51	phrog_263	72.6	3.6e-21	holin	lysis
UniRef90	UHGV-0159412_51	UniRef90_R6ITV1	186.0	0	Phage lysis protein holin	N/A
eggNOG-mapper	UHGV-0159412_51	445971.ANASTE_00091	59.7	0.000000000352	SPP1 phage holin	N/A
Pfam	UHGV-0159412_51	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
structural_annotation	UHGV-0159412_51	PF04688,TIGR01592	N/A	N/A	N/A	N/A