UHGV-0159452 (vOTU-027917)

Viral Genome: UHGV-0159452

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0159452
vOTU ID	vOTU-027917
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_479031
Associated BioSample	SAMN06115490
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.51 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9666
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-4.57
Jumbo phage	No

Genome content
Genome length (bp)	20,768
GC content	30.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	93%
Average CDS length (bps)	642.80
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0159452_2	phrog_541	63.2	4.3e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0159452_2	394503.Ccel_3289	66.6	0.00000000000189	N/A	N/A
PHROG	UHGV-0159452_3	phrog_8710	105.4	3.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0159452_3	1151292.QEW_2430	80.1	5.35e-18	N/A	N/A
structural_annotation	UHGV-0159452_3	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_4	phrog_556	54.9	0.0000000000000015	minor head protein	head and packaging
eggNOG-mapper	UHGV-0159452_4	585501.HMPREF6123_0831	103.0	6.49e-27	N/A	N/A
PHROG	UHGV-0159452_5	phrog_2595	62.4	6.7e-18	head-tail connector protein	connector
eggNOG-mapper	UHGV-0159452_5	1151292.QEW_2427	70.5	0.000000000000112	N/A	N/A
Pfam	UHGV-0159452_5	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0159452_5	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_6	phrog_820	113.1	1.4e-33	major tail protein	tail
eggNOG-mapper	UHGV-0159452_6	33035.JPJF01000093_gene2246	205.0	0	N/A	N/A
structural_annotation	UHGV-0159452_6	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_7	phrog_8300	55.7	8.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0159452_7	1151292.QEW_2425	60.5	0.000000000162	N/A	N/A
structural_annotation	UHGV-0159452_7	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_8	phrog_8355	105.8	9.7e-32	N/A	unknown function
UniRef90	UHGV-0159452_8	UniRef90_UPI001D0309B6	119.0	1.76e-32	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0159452_8	1415775.U729_2613	107.0	1.96e-28	N/A	N/A
Pfam	UHGV-0159452_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0159452_8	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159452_9	UniRef90_R7F982	63.9	0.00000000000137	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0159452_9	1540257.JQMW01000013_gene732	55.5	0.000000000513	Mu-like prophage protein Com	N/A
structural_annotation	UHGV-0159452_9	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_10	phrog_1535	476.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0159452_10	UniRef90_A0A174SV65	554.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0159452_10	33035.JPJF01000093_gene2243	577.0	0	phage tail tape measure protein	N/A
COG	UHGV-0159452_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0159452_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_11	phrog_1194	113.7	9.4e-34	N/A	unknown function
UniRef90	UHGV-0159452_11	UniRef90_R7F8R7	179.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0159452_11	1122918.KB907248_gene4488	112.0	1.3e-30	N/A	N/A
Pfam	UHGV-0159452_11	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0159452_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_12	phrog_6616	133.7	1.90001e-40	tail protein	tail
UniRef90	UHGV-0159452_12	UniRef90_R7F857	579.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0159452_12	272562.CA_C0063	95.9	2.39e-17	Prophage endopeptidase tail	N/A
COG	UHGV-0159452_12	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0159452_13	phrog_9116	149.4	1.54143e-44	tail protein	tail
UniRef90	UHGV-0159452_13	UniRef90_A0A3D1PJI0	216.0	0	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0159452_13	694427.Palpr_1970	139.0	2.6e-32	tail collar domain protein	N/A
Pfam	UHGV-0159452_13	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0159452_13	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0159452_14	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_15	phrog_5302	104.6	2.2e-31	tail protein	tail
eggNOG-mapper	UHGV-0159452_15	411470.RUMGNA_00248	171.0	3.78351e-44	Phage tail-collar fibre protein	N/A
COG	UHGV-0159452_15	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0159452_16	K00986	127.4	1.5e-37	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0159452_16	phrog_1423	245.9	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159452_16	UniRef90_A0A845LQ98	341.0	0	Reverse transcriptase	N/A
eggNOG-mapper	UHGV-0159452_16	755164.D6PSR5_9CAUD	305.0	0	RNA-directed DNA polymerase activity	N/A
PADLOC	UHGV-0159452_16	icity0040	97.2	3.3e-28	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0159452_16	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
structural_annotation	UHGV-0159452_16	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0159452_18	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0159452_20	phrog_918	126.6	6.1e-38	N/A	unknown function
UniRef90	UHGV-0159452_20	UniRef90_UPI0008A5D446	139.0	3.78995e-41	N/A	N/A
eggNOG-mapper	UHGV-0159452_20	1504823.CCMM01000008_gene1021	126.0	4.67e-37	N/A	N/A
Pfam	UHGV-0159452_20	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0159452_20	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_21	phrog_2459	49.1	0.00000000000013	N/A	unknown function
UniRef90	UHGV-0159452_21	UniRef90_A0A1Q6LC62	340.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0159452_21	411463.EUBVEN_00393	69.7	0.000000000403	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-0159452_21	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0159452_21	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0159452_21	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-0159452_21	PF03412,PF08239,NF040678,COG3807,COG3271	N/A	N/A	N/A	N/A
PHROG	UHGV-0159452_22	phrog_2329	61.4	6.4e-18	N/A	unknown function
PHROG	UHGV-0159452_23	phrog_10390	148.6	4.76441e-44	N/A	unknown function
UniRef90	UHGV-0159452_23	UniRef90_A0A1F8ULN8	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-0159452_23	86416.Clopa_0092	147.0	4.62428e-43	Phage-associated protein	N/A
Pfam	UHGV-0159452_23	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0159452_23	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0159452_23	PF13274,COG3600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0159452_24	390333.Ldb1186	55.8	0.0000000574	N/A	N/A
structural_annotation	UHGV-0159452_25	PF02583,COG1937	N/A	N/A	N/A	N/A
KOfam	UHGV-0159452_26	K22299	55.1	0.0000000000000016	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0159452_26	phrog_3	49.0	0.00000000000026	transcriptional repressor	transcription regulation
UniRef90	UHGV-0159452_26	UniRef90_R5Z201	91.7	6.93e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0159452_26	521460.Athe_2435	51.6	0.000000131	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0159452_26	retron_type_VI_hth_cluster2_1	51.7	0.000000000000028	N/A	Retron
Pfam	UHGV-0159452_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0159452_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0159452_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159452_27	UniRef90_R6I264	60.1	0.000000000227	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0159452_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0159452_27	PF01381,NF010465,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0159452_29	K00170	411.0	0	porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]	N/A
UniRef90	UHGV-0159452_29	UniRef90_R5Z364	647.0	0	Thiamine pyrophosphate TPP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0159452_29	1195236.CTER_1022	488.0	0	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	N/A
Pfam	UHGV-0159452_29	PF02775	N/A	N/A	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	TPP_enzyme_C
COG	UHGV-0159452_29	COG1013	N/A	N/A	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	N/A
KOfam	UHGV-0159452_30	K01872	295.9	0	AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7]	N/A
PHROG	UHGV-0159452_30	phrog_28604	190.9	0	N/A	unknown function
UniRef90	UHGV-0159452_30	UniRef90_A0A3C1WUG3	317.0	0	Alanine--tRNA ligase (Fragment)	N/A
eggNOG-mapper	UHGV-0159452_30	515620.EUBELI_00966	435.0	0	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	N/A
Pfam	UHGV-0159452_30	PF01411	N/A	N/A	tRNA synthetases class II (A)	tRNA-synt_2c
Pfam	UHGV-0159452_30	PF17147	N/A	N/A	Pyruvate:ferredoxin oxidoreductase core domain II	PFOR_II
COG	UHGV-0159452_30	COG0013	N/A	N/A	Alanyl-tRNA synthetase	N/A