UHGV-0159474 (vOTU-124371)

Viral Genome: UHGV-0159474

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0159474
vOTU ID	vOTU-124371
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_498189
Associated BioSample	SAMN06110138
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.08 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.2
Jumbo phage	No

Genome content
Genome length (bp)	28,738
GC content	45.29%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	91%
Average CDS length (bps)	608.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0159474_2	phrog_32311	64.3	9.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0159474_2	537007.BLAHAN_05238	65.1	0.0000000531	translation initiation factor activity	N/A
COG	UHGV-0159474_2	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0159474_2	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_3	phrog_892	50.4	0.000000000000032	tail fiber protein	tail
eggNOG-mapper	UHGV-0159474_3	1401067.HMPREF0872_03800	132.0	4.38e-28	cellulase activity	N/A
COG	UHGV-0159474_3	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0159474_4	phrog_399	48.2	0.000000000000085	structural protein	head and packaging
Pfam	UHGV-0159474_4	PF20387	N/A	N/A	N/A	DUF6682
structural_annotation	UHGV-0159474_4	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_5	phrog_334	297.5	0	major head protein	head and packaging
UniRef90	UHGV-0159474_5	UniRef90_A0A316SB53	442.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0159474_5	401526.TcarDRAFT_1286	314.0	0	N/A	N/A
Pfam	UHGV-0159474_5	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0159474_5	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0159474_5	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_8	phrog_156	436.5	0	portal protein	head and packaging
UniRef90	UHGV-0159474_8	UniRef90_F7NK66	510.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0159474_8	401526.TcarDRAFT_1284	537.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0159474_8	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0159474_8	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
Pfam	UHGV-0159474_9	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0159474_9	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159474_10	UniRef90_A0A351MZY3	94.0	5.05e-20	Terminase-like family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0159474_10	1009370.ALO_12436	236.0	0	Phage terminase, large subunit	N/A
COG	UHGV-0159474_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0159474_10	PF20441,MF_04144,TIGR01547	N/A	N/A	N/A	N/A
KOfam	UHGV-0159474_11	K06909	200.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0159474_11	phrog_3717	229.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0159474_11	UniRef90_A0A4S3L2W2	311.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0159474_11	1430331.EP10_10340	311.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0159474_11	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0159474_11	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0159474_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
KOfam	UHGV-0159474_12	K07474	86.3	8.2e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0159474_12	phrog_51	90.0	2.4e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0159474_12	UniRef90_UPI000833FD0A	99.8	4.64e-24	terminase small subunit	N/A
eggNOG-mapper	UHGV-0159474_12	1391647.AVSV01000003_gene1801	92.0	1.13e-21	Terminase small subunit	N/A
Pfam	UHGV-0159474_12	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0159474_12	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0159474_12	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0159474_13	1280689.AUJC01000003_gene960	54.7	0.0000000251	N/A	N/A
PHROG	UHGV-0159474_15	phrog_2329	73.0	2.5e-21	N/A	unknown function
UniRef90	UHGV-0159474_15	UniRef90_UPI001AEB4F95	63.9	0.00000000000341	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0159474_15	1120746.CCNL01000005_gene152	67.8	0.000000000000273	N/A	N/A
Pfam	UHGV-0159474_15	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
structural_annotation	UHGV-0159474_15	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0159474_17	401526.TcarDRAFT_1279	77.8	4.35e-16	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0159474_17	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_18	phrog_190	149.1	2.24208e-44	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159474_18	UniRef90_UPI0018C4B0C5	131.0	3.22e-37	N/A	N/A
eggNOG-mapper	UHGV-0159474_18	1347392.CCEZ01000043_gene417	122.0	1.97e-34	N/A	N/A
Pfam	UHGV-0159474_18	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0159474_18	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0159474_19	K03111	135.2	7.6e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0159474_19	phrog_44	142.7	2.20004e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159474_19	UniRef90_R6WK64	180.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0159474_19	626939.HMPREF9443_01150	169.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0159474_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0159474_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0159474_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0159474_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0159474_19	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0159474_21	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159474_23	UniRef90_A0A6N7WVF3	66.6	0.0000000000233	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0159474_24	phrog_3878	47.2	0.00000000000036	N/A	unknown function
PHROG	UHGV-0159474_27	phrog_12728	43.4	0.0000000000067	N/A	unknown function
KOfam	UHGV-0159474_28	K00558	237.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0159474_28	phrog_116	258.4	0	DNA methyltransferase	other
UniRef90	UHGV-0159474_28	UniRef90_A0A1Q6RAH0	649.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0159474_28	1235799.C818_00443	365.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0159474_28	MTase_II_00058	215.4	0	Type II methyltransferase	RM
Pfam	UHGV-0159474_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0159474_28	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0159474_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0159474_28	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_30	phrog_9804	40.7	0.000000000032	N/A	unknown function
UniRef90	UHGV-0159474_30	UniRef90_A0A316S7J6	97.1	7.08e-22	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0159474_30	1280706.AUJE01000046_gene1152	67.8	0.000000000018	N/A	N/A
structural_annotation	UHGV-0159474_30	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_31	phrog_270	104.1	1.7e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159474_31	UniRef90_UPI0011DDD220	108.0	1.98e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0159474_31	1232453.BAIF02000016_gene3127	108.0	1.13e-24	N/A	N/A
Pfam	UHGV-0159474_31	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0159474_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0159474_31	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_32	phrog_72	57.8	1.5e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0159474_32	445972.ANACOL_01825	115.0	4.4e-30	N/A	N/A
structural_annotation	UHGV-0159474_32	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_33	phrog_1366	298.9	0	N/A	unknown function
UniRef90	UHGV-0159474_33	UniRef90_UPI001EDFC883	364.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0159474_33	555779.Dthio_PD3616	266.0	0	SMART AAA ATPase	N/A
Pfam	UHGV-0159474_33	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0159474_33	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0159474_33	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0159474_36	phrog_14367	49.7	0.000000000000025	N/A	unknown function
UniRef90	UHGV-0159474_36	UniRef90_R6WTN1	79.7	2.11e-17	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0159474_36	478749.BRYFOR_06242	53.9	0.0000000269	LysM domain	N/A
Pfam	UHGV-0159474_36	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0159474_36	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0159474_36	MF_02014,NF010723	N/A	N/A	N/A	N/A
KOfam	UHGV-0159474_38	K07729	52.8	0.0000000000000092	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0159474_38	phrog_3	43.1	0.000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-0159474_38	UniRef90_A0A316S6E7	73.2	0.00000000000000119	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0159474_38	1250278.JQNQ01000001_gene3158	46.6	0.00000539	transcriptional regulator	N/A
Pfam	UHGV-0159474_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0159474_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0159474_38	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0159474_39	K22300	66.0	7.8e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0159474_39	phrog_8	73.5	4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0159474_39	UniRef90_A0A316SAV3	71.6	0.00000000000011	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0159474_39	431943.CKL_3317	68.9	0.00000000000112	transcriptional regulator	N/A
PADLOC	UHGV-0159474_39	retron_type_VI_hth_cluster2_1	47.3	0.0000000000005	N/A	Retron
Pfam	UHGV-0159474_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0159474_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0159474_39	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0159474_43	K06400	386.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0159474_43	phrog_95	369.0	0	integrase	integration and excision
UniRef90	UHGV-0159474_43	UniRef90_E8LBZ4	415.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0159474_43	626939.HMPREF9443_00357	415.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0159474_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0159474_43	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0159474_43	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0159474_43	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0159474_43	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A