UHGV-0160290 (vOTU-016522)

Viral Genome: UHGV-0160290

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0160290
vOTU ID	vOTU-016522
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_491971
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.86 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9757
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.04
Jumbo phage	No

Genome content
Genome length (bp)	27,394
GC content	40.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	94%
Average CDS length (bps)	694.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0160290_3	K03497	155.2	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0160290_3	phrog_6218	254.6	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160290_3	UniRef90_UPI000E47CAB6	511.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0160290_3	1408437.JNJN01000030_gene1074	253.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0160290_3	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0160290_3	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0160290_3	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0160290_3	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0160290_4	K03427	150.3	1.68156e-44	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0160290_4	phrog_6380	282.9	0	DNA methyltransferase	other
UniRef90	UHGV-0160290_4	UniRef90_UPI001B3C6DA9	405.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0160290_4	1444306.JFZC01000034_gene2643	232.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0160290_4	MTase_I_00005	92.1	5.8e-27	Type I methyltransferase	RM
Pfam	UHGV-0160290_4	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0160290_4	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
PHROG	UHGV-0160290_5	phrog_6380	67.7	1.5e-19	DNA methyltransferase	other
UniRef90	UHGV-0160290_5	UniRef90_G9R0Z5	148.0	3.83e-40	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0160290_5	1111134.HMPREF1253_0397	130.0	5.51e-34	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0160290_5	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
PHROG	UHGV-0160290_6	phrog_24518	81.2	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0160290_6	1519439.JPJG01000077_gene922	110.0	1.35e-27	N/A	N/A
PHROG	UHGV-0160290_7	phrog_824	145.3	2.00386e-43	N/A	unknown function
UniRef90	UHGV-0160290_7	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0160290_7	397288.C806_00096	158.0	0	VRR_NUC	N/A
Pfam	UHGV-0160290_7	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0160290_7	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_9	phrog_2118	119.5	3.2e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160290_9	UniRef90_A0A374DVG7	236.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0160290_9	610130.Closa_0730	146.0	6.86636e-44	HNH endonuclease	N/A
Pfam	UHGV-0160290_9	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0160290_9	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0160290_9	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_10	phrog_8684	96.4	1.6e-28	N/A	unknown function
UniRef90	UHGV-0160290_10	UniRef90_A0A374DV44	174.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0160290_10	563031.HMPREF0666_01127	79.0	4.02e-17	YopX protein	N/A
Pfam	UHGV-0160290_10	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0160290_10	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0160290_10	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_13	phrog_3584	150.6	1.12104e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0160290_13	1235800.C819_00515	72.8	0.00000000000197	N/A	N/A
structural_annotation	UHGV-0160290_13	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_14	phrog_31049	40.6	0.00000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0160290_14	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-0160290_14	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_15	phrog_119	68.4	1.1e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160290_15	UniRef90_A0A412ULY9	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0160290_15	1158607.UAU_01026	103.0	3.57e-27	HNH endonuclease	N/A
Pfam	UHGV-0160290_15	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0160290_15	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0160290_16	phrog_5110	82.7	3.3e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0160290_16	UniRef90_A0A1M5U1D5	114.0	8.42e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0160290_16	86416.Clopa_0336	100.0	2.96e-26	N/A	N/A
Pfam	UHGV-0160290_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0160290_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_17	phrog_9	301.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0160290_17	UniRef90_A0A412UM03	1003.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0160290_17	86416.Clopa_0337	629.0	0	Phage Terminase	N/A
Pfam	UHGV-0160290_17	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0160290_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0160290_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0160290_17	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_18	phrog_12	91.0	1.1e-26	portal protein	head and packaging
UniRef90	UHGV-0160290_18	UniRef90_A0A412ULV9	745.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0160290_18	1415774.U728_1254	258.0	0	Phage portal protein	N/A
Pfam	UHGV-0160290_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0160290_18	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0160290_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0160290_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0160290_19	K01358	142.8	3.59994e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0160290_19	phrog_94	212.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0160290_19	UniRef90_A0A412ULU1	452.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0160290_19	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0160290_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0160290_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0160290_19	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_20	phrog_10	128.9	5.4e-38	major head protein	head and packaging
UniRef90	UHGV-0160290_20	UniRef90_A0A412ULW9	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0160290_20	1211817.CCAT010000053_gene2132	325.0	0	Phage capsid family	N/A
Pfam	UHGV-0160290_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0160290_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0160290_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0160290_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_21	phrog_749	54.6	0.0000000000000018	N/A	unknown function
UniRef90	UHGV-0160290_21	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0160290_21	1211817.CCAT010000053_gene2133	58.9	0.000000000584	N/A	N/A
PHROG	UHGV-0160290_22	phrog_19734	75.1	8.5e-22	N/A	unknown function
UniRef90	UHGV-0160290_22	UniRef90_UPI00057FE645	59.3	0.00000000441	phage head closure protein	N/A
eggNOG-mapper	UHGV-0160290_22	86416.Clopa_0343	62.0	0.0000000000798	N/A	N/A
NCBIFam	UHGV-0160290_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0160290_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160290_23	879305.HMPREF9290_0134	52.4	0.000000373	N/A	N/A
structural_annotation	UHGV-0160290_23	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160290_24	UniRef90_UPI000E5564A4	265.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0160290_24	1235792.C808_00089	50.4	0.00000606	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0160290_24	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0160290_24	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_25	phrog_88	75.3	9.2e-22	major tail protein	tail
UniRef90	UHGV-0160290_25	UniRef90_A0A1G5CNS8	150.0	1.84971e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0160290_25	1321782.HMPREF1986_01362	65.1	0.000000000263	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0160290_25	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0160290_25	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160290_26	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0160290_27	K20283	53.1	2.9e-16	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0160290_27	phrog_1272	269.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0160290_27	UniRef90_A0A412ULX0	1760.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0160290_27	588581.Cpap_1264	215.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0160290_27	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0160290_27	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0160290_27	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_28	phrog_33	80.5	3.7e-23	distal tail protein Dit	tail
UniRef90	UHGV-0160290_28	UniRef90_A0A1G5CPA2	139.0	1.41e-36	Phage-related protein	N/A
eggNOG-mapper	UHGV-0160290_28	1160721.RBI_I01575	90.9	4.94e-19	Phage tail protein	N/A
COG	UHGV-0160290_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0160290_28	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_29	phrog_1067	95.0	2.3e-28	minor head protein	head and packaging
UniRef90	UHGV-0160290_29	UniRef90_A0A348ZBV6	143.0	1.4e-35	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0160290_29	1462527.CCDM010000003_gene3730	62.0	0.000000201	gp58-like protein	N/A
Pfam	UHGV-0160290_29	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0160290_29	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0160290_29	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160290_29	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160290_30	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160290_32	UniRef90_A0A374MYZ3	179.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0160290_32	1007096.BAGW01000032_gene1580	87.4	2.12e-21	N/A	N/A
PHROG	UHGV-0160290_33	phrog_881	87.2	9.9e-26	holin	lysis
UniRef90	UHGV-0160290_33	UniRef90_A0A4Q7P349	103.0	1.59e-27	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0160290_33	742740.HMPREF9474_02251	106.0	1.74e-29	Putative phage holin Dp-1	N/A
Pfam	UHGV-0160290_33	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0160290_33	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_34	phrog_774	60.3	4.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0160290_34	397290.C810_05225	109.0	5.63e-30	N/A	N/A
KOfam	UHGV-0160290_35	K01447	56.8	4.9e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0160290_35	phrog_20388	308.2	0	endolysin	lysis
UniRef90	UHGV-0160290_35	UniRef90_A0A374N1L8	542.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0160290_35	1203606.HMPREF1526_00253	315.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0160290_35	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0160290_35	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0160290_35	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0160290_35	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0160290_36	K23518	274.0	0	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]	N/A
UniRef90	UHGV-0160290_36	UniRef90_A0A2N0UKU7	638.0	0	O-acetyl-ADP-ribose deacetylase	N/A
eggNOG-mapper	UHGV-0160290_36	500632.CLONEX_01035	435.0	0	domain protein	N/A
Pfam	UHGV-0160290_36	PF01661	N/A	N/A	Macro domain	Macro
NCBIFam	UHGV-0160290_36	NF001664.0	N/A	N/A	O-acetyl-ADP-ribose deacetylase	N/A
COG	UHGV-0160290_36	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0160290_36	PF01661,PF13560,MF_01205,NF001660,NF041951,COG2110,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0160290_37	phrog_7371	192.3	0	N/A	unknown function
UniRef90	UHGV-0160290_37	UniRef90_A0A2N0UQY2	433.0	0	VWFA domain-containing protein	N/A
eggNOG-mapper	UHGV-0160290_37	411467.BACCAP_02989	318.0	0	N/A	N/A
COG	UHGV-0160290_37	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A
structural_annotation	UHGV-0160290_37	PF00092,MF_01340,NF010238,COG4245	N/A	N/A	N/A	N/A