UHGV-0160338 (vOTU-046289)

Viral Genome: UHGV-0160338

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0160338
vOTU ID	vOTU-046289
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_452661
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.37
Jumbo phage	No

Genome content
Genome length (bp)	42,919
GC content	52.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	93%
Average CDS length (bps)	530.80
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0160338_1	K07319	121.5	8.5e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0160338_1	phrog_498	439.8	0	DNA methyltransferase	other
UniRef90	UHGV-0160338_1	UniRef90_A0A810Q3Z7	436.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0160338_1	1423758.BN55_01455	424.0	0	DNA methylase	N/A
PADLOC	UHGV-0160338_1	MTase_II_00015	239.5	0	Type II methyltransferase	RM
Pfam	UHGV-0160338_1	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0160338_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0160338_1	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0160338_1	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0160338_4	K06909	377.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0160338_4	phrog_5653	161.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0160338_4	UniRef90_A0A2U1BEH4	712.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0160338_4	33035.JPJF01000106_gene3136	457.0	0	Terminase small subunit	N/A
Pfam	UHGV-0160338_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0160338_4	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0160338_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0160338_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0160338_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_5	phrog_533	350.0	0	portal protein	head and packaging
UniRef90	UHGV-0160338_5	UniRef90_UPI0006C81717	674.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0160338_5	1226322.HMPREF1545_00044	593.0	0	N/A	N/A
Pfam	UHGV-0160338_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0160338_5	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_7	phrog_8680	233.3	0	N/A	unknown function
UniRef90	UHGV-0160338_7	UniRef90_A0A3R6D7I3	259.0	0	N/A	N/A
eggNOG-mapper	UHGV-0160338_7	411470.RUMGNA_02208	239.0	0	N/A	N/A
Pfam	UHGV-0160338_7	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0160338_7	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_9	phrog_581	287.0	0	minor head protein	head and packaging
UniRef90	UHGV-0160338_9	UniRef90_UPI001D080D49	559.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0160338_9	1226322.HMPREF1545_00046	375.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0160338_9	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0160338_9	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_9	PF06152,TIGR01641	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_11	PF18152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160338_12	1232443.BAIA02000078_gene31	86.3	5.77e-19	N/A	N/A
structural_annotation	UHGV-0160338_12	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_13	phrog_10	167.1	0	major head protein	head and packaging
UniRef90	UHGV-0160338_13	UniRef90_A0A2U1BEF2	534.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0160338_13	1226322.HMPREF1545_00050	477.0	0	Phage capsid family	N/A
Pfam	UHGV-0160338_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0160338_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0160338_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0160338_13	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_14	phrog_541	106.1	2.3e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-0160338_14	642492.Clole_0822	67.0	0.0000000000029	N/A	N/A
PHROG	UHGV-0160338_15	phrog_3366	92.2	5.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0160338_15	1226322.HMPREF1545_00053	151.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0160338_15	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_16	phrog_556	70.7	1.9e-20	minor head protein	head and packaging
UniRef90	UHGV-0160338_16	UniRef90_UPI00195E1497	171.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0160338_16	1226322.HMPREF1545_00054	130.0	5.74e-37	Minor capsid protein	N/A
Pfam	UHGV-0160338_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0160338_16	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_17	phrog_3266	52.6	0.0000000000000069	tail completion	connector
eggNOG-mapper	UHGV-0160338_17	1232443.BAIA02000078_gene24	142.0	2.65e-41	N/A	N/A
structural_annotation	UHGV-0160338_17	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_18	phrog_3099	99.1	4.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0160338_18	1226322.HMPREF1545_00056	243.0	0	N/A	N/A
structural_annotation	UHGV-0160338_18	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_19	phrog_11299	88.8	6.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0160338_19	693746.OBV_18160	217.0	0	N/A	N/A
structural_annotation	UHGV-0160338_19	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_20	phrog_706	125.3	4.6e-37	N/A	unknown function
UniRef90	UHGV-0160338_20	UniRef90_UPI000682A80B	229.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0160338_20	693746.OBV_18170	219.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0160338_20	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0160338_20	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_22	phrog_1535	88.9	1.2e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0160338_22	693746.OBV_18190	175.0	2.12997e-42	domain protein	N/A
COG	UHGV-0160338_22	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_22	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_23	phrog_1194	54.7	0.0000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0160338_23	1226322.HMPREF1545_00060	204.0	0	N/A	N/A
structural_annotation	UHGV-0160338_23	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_24	phrog_32744	720.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0160338_24	1120998.AUFC01000030_gene2247	227.0	0	N/A	N/A
structural_annotation	UHGV-0160338_24	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_25	phrog_3904	77.1	1.2e-22	tail fiber protein	tail
eggNOG-mapper	UHGV-0160338_25	1519439.JPJG01000060_gene1892	61.6	0.000000209	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0160338_25	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0160338_25	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0160338_27	phrog_199	94.0	1.7e-27	holin	lysis
UniRef90	UHGV-0160338_27	UniRef90_K1UL76	284.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-0160338_27	411467.BACCAP_00280	139.0	4.37001e-40	Bacteriophage holin family	N/A
Pfam	UHGV-0160338_27	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0160338_27	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0160338_27	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0160338_27	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0160338_28	K08640	89.1	8.4e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0160338_28	phrog_18955	155.5	0	N/A	unknown function
UniRef90	UHGV-0160338_28	UniRef90_UPI001C035E39	593.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0160338_28	1235797.C816_04171	339.0	0	Peptidase M15	N/A
Pfam	UHGV-0160338_28	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0160338_28	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0160338_28	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_28	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_34	phrog_3754	109.2	3.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0160338_34	1226322.HMPREF1545_00073	164.0	0	N/A	N/A
PHROG	UHGV-0160338_35	phrog_21718	112.6	3.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0160338_35	397290.C810_05210	82.0	1.34e-17	N/A	N/A
PHROG	UHGV-0160338_36	phrog_22984	84.2	9.3e-25	N/A	unknown function
PHROG	UHGV-0160338_37	phrog_16490	146.9	2.24208e-44	N/A	unknown function
eggNOG-mapper	UHGV-0160338_37	1408437.JNJN01000043_gene803	154.0	1.06499e-43	N/A	N/A
PHROG	UHGV-0160338_38	phrog_20016	167.2	0	N/A	unknown function
UniRef90	UHGV-0160338_38	UniRef90_A0A2Z4QB67	159.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0160338_38	1226322.HMPREF1545_00077	147.0	1.1911e-43	N/A	N/A
structural_annotation	UHGV-0160338_38	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_39	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160338_40	1232443.BAIA02000078_gene6	55.8	0.0000000149	N/A	N/A
KOfam	UHGV-0160338_41	K06400	286.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0160338_41	phrog_95	296.0	0	integrase	integration and excision
UniRef90	UHGV-0160338_41	UniRef90_A0A3A9I9T1	353.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0160338_41	357809.Cphy_2997	297.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0160338_41	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0160338_41	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0160338_41	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0160338_41	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0160338_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0160338_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0160338_42	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_43	TIGR04165,COG3478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_46	PF03885	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_47	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160338_48	UniRef90_A0A810QCI5	70.5	0.0000000000000109	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0160338_48	1514668.JOOA01000002_gene1643	53.5	0.000000165	N/A	N/A
Pfam	UHGV-0160338_48	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0160338_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0160338_48	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_52	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_54	phrog_4973	50.1	0.000000000000044	N/A	unknown function
UniRef90	UHGV-0160338_54	UniRef90_A0A3D3Y5F2	66.2	0.000000000000952	DNA-binding protein	N/A
Pfam	UHGV-0160338_54	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0160338_54	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160338_55	UniRef90_A0A845QLQ8	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0160338_55	1238184.CM001792_gene2550	97.1	4.63e-22	N/A	N/A
Pfam	UHGV-0160338_55	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0160338_55	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160338_56	UniRef90_B0PAM4	166.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0160338_56	1238184.CM001792_gene2549	52.8	0.00000614	N/A	N/A
structural_annotation	UHGV-0160338_56	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_57	phrog_72	65.0	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160338_57	UniRef90_A0A8D9PDS2	180.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0160338_57	445972.ANACOL_01825	146.0	3.20057e-42	N/A	N/A
structural_annotation	UHGV-0160338_57	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_58	phrog_7566	91.3	7.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0160338_58	508419.F8J187_9CAUD	103.0	1.54e-27	N/A	N/A
KOfam	UHGV-0160338_59	K03111	149.3	3.92364e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0160338_59	phrog_44	144.7	5.49309e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160338_59	UniRef90_A0A1C5QDM6	207.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0160338_59	1226322.HMPREF1545_04080	206.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0160338_59	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0160338_59	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0160338_59	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0160338_59	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0160338_59	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_60	phrog_2149	67.4	2.6e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160338_60	UniRef90_A0A417QFV0	104.0	1.67e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0160338_60	742740.HMPREF9474_03117	181.0	0	N/A	N/A
structural_annotation	UHGV-0160338_60	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_62	PF21485	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_64	phrog_190	84.8	1.1e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160338_64	UniRef90_UPI0019595FE2	110.0	1.57e-27	N/A	N/A
eggNOG-mapper	UHGV-0160338_64	1226322.HMPREF1545_00295	108.0	1.57e-27	N/A	N/A
Pfam	UHGV-0160338_64	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0160338_64	PF06356,NF033179	N/A	N/A	N/A	N/A
KOfam	UHGV-0160338_66	K00558	132.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0160338_66	phrog_116	153.2	0	DNA methyltransferase	other
UniRef90	UHGV-0160338_66	UniRef90_A0A1C5KYC3	369.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0160338_66	138119.DSY0044	313.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0160338_66	oMTase_00004	159.1	0	orphan methyltransferase	RM
Pfam	UHGV-0160338_66	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0160338_66	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0160338_67	phrog_15198	41.9	0.000000000017	N/A	unknown function
UniRef90	UHGV-0160338_67	UniRef90_A0A3A6ECV8	108.0	3.04e-28	N/A	N/A
eggNOG-mapper	UHGV-0160338_67	411470.RUMGNA_00214	68.6	0.00000000000185	N/A	N/A
Pfam	UHGV-0160338_67	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0160338_67	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160338_68	PF10781	N/A	N/A	N/A	N/A
PHROG	UHGV-0160338_69	phrog_3136	62.3	9e-18	N/A	unknown function
Pfam	UHGV-0160338_69	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0160338_69	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
KOfam	UHGV-0160338_75	K22299	41.7	0.000000000023	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0160338_75	phrog_8	43.9	0.0000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-0160338_75	UniRef90_A0A1C6J963	106.0	2.92e-28	Helix-turn-helix	N/A
Pfam	UHGV-0160338_75	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0160338_75	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A