UHGV-0160421 (vOTU-019589)

Viral Genome: UHGV-0160421

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0160421
vOTU ID	vOTU-019589
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_460848
Associated BioSample	SAMN05971411
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.43 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	5
Recoded stop codon	No

Viral Content
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.91
Jumbo phage	No

Genome content
Genome length (bp)	33,739
GC content	42.00%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	91%
Average CDS length (bps)	700.91
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0160421_1	K08131	40.2	0.0000000000098	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0160421_1	phrog_6616	727.0	0	tail protein	tail
UniRef90	UHGV-0160421_1	UniRef90_A0A1C5RGI0	1996.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0160421_1	476272.RUMHYD_01992	297.0	0	N/A	N/A
Pfam	UHGV-0160421_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0160421_1	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
structural_annotation	UHGV-0160421_1	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_2	phrog_1194	70.3	2.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0160421_2	33035.JPJF01000093_gene2242	165.0	0	N/A	N/A
structural_annotation	UHGV-0160421_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_3	phrog_1535	497.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0160421_3	UniRef90_A0A1C5RGR7	1550.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0160421_3	33035.JPJF01000093_gene2243	785.0	0	phage tail tape measure protein	N/A
COG	UHGV-0160421_3	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0160421_3	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_4	phrog_8355	96.1	1.5e-28	N/A	unknown function
UniRef90	UHGV-0160421_4	UniRef90_UPI001F2CFAB2	149.0	5.60519e-45	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0160421_4	33035.JPJF01000093_gene2244	84.7	1.37e-20	N/A	N/A
structural_annotation	UHGV-0160421_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_5	phrog_8300	82.0	6.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0160421_5	742740.HMPREF9474_03512	101.0	9.08e-27	N/A	N/A
structural_annotation	UHGV-0160421_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_6	phrog_820	110.9	8.5e-33	major tail protein	tail
eggNOG-mapper	UHGV-0160421_6	33035.JPJF01000093_gene2246	192.0	0	N/A	N/A
Pfam	UHGV-0160421_6	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
structural_annotation	UHGV-0160421_6	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_7	phrog_2595	84.7	1e-24	head-tail connector protein	connector
UniRef90	UHGV-0160421_7	UniRef90_UPI001C0EB705	245.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0160421_7	483218.BACPEC_01150	132.0	4.12e-38	N/A	N/A
Pfam	UHGV-0160421_7	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0160421_7	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_8	phrog_556	53.8	0.0000000000000033	minor head protein	head and packaging
eggNOG-mapper	UHGV-0160421_8	742740.HMPREF9474_03509	181.0	0	N/A	N/A
PHROG	UHGV-0160421_9	phrog_8710	149.2	9.80909e-45	N/A	unknown function
eggNOG-mapper	UHGV-0160421_9	742740.HMPREF9474_03508	158.0	0	N/A	N/A
structural_annotation	UHGV-0160421_9	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_10	phrog_541	93.6	1.8e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0160421_10	1298920.KI911353_gene4848	211.0	0	N/A	N/A
PHROG	UHGV-0160421_11	phrog_422	285.7	0	major head protein	head and packaging
UniRef90	UHGV-0160421_11	UniRef90_A0A414W378	633.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0160421_11	663278.Ethha_1589	401.0	0	N/A	N/A
structural_annotation	UHGV-0160421_11	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_12	phrog_2303	162.4	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0160421_12	1304866.K413DRAFT_0806	182.0	0	N/A	N/A
PHROG	UHGV-0160421_14	phrog_478	118.7	2.8e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0160421_14	UniRef90_R6R5K5	136.0	8.1e-39	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0160421_14	1111121.HMPREF1247_0834	136.0	1.08e-39	N/A	N/A
PHROG	UHGV-0160421_15	phrog_1048	168.7	0	N/A	unknown function
UniRef90	UHGV-0160421_15	UniRef90_A0A373P4J3	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-0160421_15	457412.RSAG_01107	267.0	0	N/A	N/A
Pfam	UHGV-0160421_15	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0160421_15	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0160421_15	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_16	phrog_581	246.5	0	minor head protein	head and packaging
UniRef90	UHGV-0160421_16	UniRef90_A0A414W2X3	1059.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0160421_16	33035.JPJF01000093_gene2255	537.0	0	N/A	N/A
Pfam	UHGV-0160421_16	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0160421_16	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0160421_16	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0160421_16	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_17	phrog_25639	75.8	3.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0160421_17	742740.HMPREF9474_03502	62.4	0.00000000000249	N/A	N/A
PHROG	UHGV-0160421_18	phrog_533	296.0	0	portal protein	head and packaging
UniRef90	UHGV-0160421_18	UniRef90_A0A1C5YZW6	1018.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0160421_18	742740.HMPREF9474_03501	723.0	0	N/A	N/A
structural_annotation	UHGV-0160421_18	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0160421_19	K06909	85.5	8.9e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0160421_19	phrog_2	70.9	2.9e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0160421_19	UniRef90_A0A414SEW8	934.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0160421_19	742740.HMPREF9474_03500	782.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0160421_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0160421_19	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0160421_20	K07474	137.2	2e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0160421_20	phrog_51	151.4	4.2039e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0160421_20	UniRef90_A0A415L5B5	298.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0160421_20	1298920.KI911353_gene4857	219.0	0	Terminase small subunit	N/A
Pfam	UHGV-0160421_20	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0160421_20	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0160421_20	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_21	phrog_36	46.8	0.00000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-0160421_21	UniRef90_UPI000931D7F9	239.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0160421_21	411459.RUMOBE_00943	256.0	0	N/A	N/A
structural_annotation	UHGV-0160421_21	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_22	phrog_6568	59.9	3.7e-17	N/A	unknown function
PHROG	UHGV-0160421_26	phrog_8684	110.7	1e-32	N/A	unknown function
UniRef90	UHGV-0160421_26	UniRef90_A0A395X9H4	245.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0160421_26	457412.RSAG_01162	207.0	0	YopX protein	N/A
Pfam	UHGV-0160421_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0160421_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0160421_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160421_27	UniRef90_A0A173WN74	315.0	0	Sigma-70, region 4	N/A
Pfam	UHGV-0160421_27	PF18024	N/A	N/A	Helix-turn-helix domain	HTH_50
Pfam	UHGV-0160421_27	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0160421_27	PF01710,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_29	phrog_23707	85.2	8.9e-25	N/A	unknown function
UniRef90	UHGV-0160421_29	UniRef90_UPI00156E1A02	131.0	1.36e-37	alanine racemase	N/A
eggNOG-mapper	UHGV-0160421_29	411483.FAEPRAA2165_01889	65.1	0.0000000000486	N/A	N/A
PHROG	UHGV-0160421_30	phrog_15982	133.0	3.1e-39	N/A	unknown function
UniRef90	UHGV-0160421_30	UniRef90_A5ZPN2	711.0	0	N/A	N/A
eggNOG-mapper	UHGV-0160421_30	411459.RUMOBE_00949	711.0	0	N/A	N/A
Pfam	UHGV-0160421_30	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0160421_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0160421_30	PF12961,PF11300,MF_00771,NF002615,COG2411	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_31	phrog_8470	341.3	0	N/A	unknown function
UniRef90	UHGV-0160421_31	UniRef90_UPI001D086F83	881.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0160421_31	411459.RUMOBE_00950	1365.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0160421_31	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0160421_31	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160421_32	411459.RUMOBE_00951	264.0	0	N/A	N/A
KOfam	UHGV-0160421_33	K03469	50.5	0.000000000000046	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0160421_33	phrog_531	54.3	0.0000000000000027	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160421_33	UniRef90_A0A173WRS0	266.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0160421_33	411459.RUMOBE_00952	264.0	0	RNase H	N/A
Pfam	UHGV-0160421_33	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0160421_33	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0160421_33	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_34	phrog_3584	141.2	6.69961e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0160421_34	411459.RUMOBE_00953	518.0	0	N/A	N/A
structural_annotation	UHGV-0160421_34	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160421_39	UniRef90_UPI001D0976C2	257.0	0	actin family protein	N/A
UniRef90	UHGV-0160421_40	UniRef90_UPI00189D0969	129.0	2.26e-37	N/A	N/A
eggNOG-mapper	UHGV-0160421_40	742723.HMPREF9477_00936	94.4	1.13e-24	Helix-turn-helix	N/A
Pfam	UHGV-0160421_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0160421_40	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0160421_41	K22299	57.0	5.2e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0160421_41	phrog_8	77.0	3.7e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0160421_41	UniRef90_UPI001D02CC6F	199.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0160421_41	742723.HMPREF9477_00937	168.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0160421_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0160421_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0160421_41	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_42	phrog_87	82.1	5e-24	metallo-protease	other
UniRef90	UHGV-0160421_42	UniRef90_A0A414EG59	294.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0160421_42	457412.RSAG_00798	196.0	0	Zn peptidase	N/A
Pfam	UHGV-0160421_42	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0160421_42	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0160421_42	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0160421_43	phrog_1847	346.7	0	N/A	unknown function
UniRef90	UHGV-0160421_43	UniRef90_A0A173ZYI4	643.0	0	T5orf172 domain	N/A
eggNOG-mapper	UHGV-0160421_43	1256908.HMPREF0373_00641	468.0	0	T5orf172	N/A
Pfam	UHGV-0160421_43	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0160421_43	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0160421_43	PF13250,NF041454	N/A	N/A	N/A	N/A
KOfam	UHGV-0160421_44	K06400	313.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0160421_44	phrog_95	324.6	0	integrase	integration and excision
UniRef90	UHGV-0160421_44	UniRef90_A5ZPQ0	928.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0160421_44	411459.RUMOBE_00967	928.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0160421_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0160421_44	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0160421_44	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0160421_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0160421_44	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A