UHGV-0160471 (vOTU-022213)

Viral Genome: UHGV-0160471

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0160471
vOTU ID	vOTU-022213
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_476027
Associated BioSample	SAMN06115463
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.07 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.01
Jumbo phage	No

Genome content
Genome length (bp)	36,980
GC content	39.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	86%
Average CDS length (bps)	455.74
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0160471_1	phrog_215	49.7	0.00000000000008	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0160471_1	UniRef90_A0A1G5IID5	79.7	6.78e-16	Ig-like domain (Group 2) (Fragment)	N/A
eggNOG-mapper	UHGV-0160471_1	445973.CLOBAR_00420	74.7	0.0000000000000344	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0160471_1	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0160471_1	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_2	phrog_1535	66.3	2e-22	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0160471_2	1298920.KI911353_gene2649	107.0	1.06e-20	tape measure	N/A
COG	UHGV-0160471_2	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0160471_3	phrog_7168	77.8	4.4e-23	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160471_3	UniRef90_A0A173UI60	595.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-0160471_3	745718.JADT01000019_gene1515	84.7	1.11e-16	Intron encoded nuclease repeat motif	N/A
Pfam	UHGV-0160471_3	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0160471_3	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-0160471_3	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0160471_3	PF07453,PF19835,PF04936,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_4	phrog_1535	66.4	2.2e-19	tail length tape measure protein	tail
UniRef90	UHGV-0160471_4	UniRef90_A0A173UI54	652.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0160471_4	1408437.JNJN01000010_gene1238	150.0	1.34e-37	domain protein	N/A
COG	UHGV-0160471_4	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_5	phrog_14030	129.5	2.3e-38	N/A	unknown function
UniRef90	UHGV-0160471_5	UniRef90_A0A3R6ARM6	206.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0160471_5	1235793.C809_02691	168.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0160471_5	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
UniRef90	UHGV-0160471_8	UniRef90_A0A8D9PGN2	184.0	0	Major tail protein	N/A
structural_annotation	UHGV-0160471_8	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160471_9	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160471_10	1298920.KI911353_gene2654	177.0	0	N/A	N/A
AcrCatalog	UHGV-0160471_10	cluster_24841	90.9	5.43e-25	NA	N/A
structural_annotation	UHGV-0160471_11	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_12	phrog_443	54.8	0.0000000000000029	holin	lysis
UniRef90	UHGV-0160471_12	UniRef90_UPI000BA3B743	98.6	9.63e-26	holin	N/A
eggNOG-mapper	UHGV-0160471_12	411490.ANACAC_00704	87.8	2.78e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0160471_12	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0160471_12	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_13	phrog_4105	84.4	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0160471_13	411459.RUMOBE_00911	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0160471_14	397290.C810_01402	62.0	0.000000000101	N/A	N/A
UniRef90	UHGV-0160471_15	UniRef90_A0A416G2T8	68.6	0.000000000000162	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-0160471_15	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_16	phrog_29	162.3	0	major head protein	head and packaging
UniRef90	UHGV-0160471_16	UniRef90_A0A173UF26	716.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0160471_16	1118054.CAGW01000102_gene4700	160.0	1.16308e-43	Phage major capsid protein E	N/A
Pfam	UHGV-0160471_16	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0160471_16	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_17	phrog_909	73.6	2.6e-21	major head protein	head and packaging
UniRef90	UHGV-0160471_17	UniRef90_R7BGI8	155.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0160471_17	1536772.R70723_06665	55.5	0.0000000191	N/A	N/A
UniRef90	UHGV-0160471_18	UniRef90_R6C0B6	170.0	0	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0160471_19	phrog_64	173.8	0	portal protein	head and packaging
UniRef90	UHGV-0160471_19	UniRef90_A0A173UGW9	931.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0160471_19	1298920.KI911353_gene2663	456.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0160471_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0160471_19	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_20	phrog_36	66.7	4.8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0160471_20	UniRef90_UPI000FF89671	80.1	1.75e-16	N/A	N/A
eggNOG-mapper	UHGV-0160471_20	994573.T472_0211085	78.2	1.96e-16	sigma factor activity	N/A
COG	UHGV-0160471_20	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0160471_20	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_21	phrog_38	153.5	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0160471_21	UniRef90_UPI001D009E65	1014.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0160471_21	1121866.AUGK01000003_gene1428	236.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0160471_21	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0160471_21	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160471_21	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160471_24	UniRef90_A0A8D9PGN8	93.2	2.84e-23	Acetyl-coA carboxylase zinc finger domain protein	N/A
structural_annotation	UHGV-0160471_26	PF04466	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160471_30	411473.RUMCAL_02525	72.0	0.00000000000000266	N/A	N/A
PHROG	UHGV-0160471_31	phrog_229	116.7	1.4e-34	MazG-like pyrophosphatase	other
UniRef90	UHGV-0160471_31	UniRef90_UPI001D02B1F9	273.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-0160471_31	428125.CLOLEP_01391	103.0	5.31e-27	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0160471_31	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0160471_31	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0160471_31	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160471_32	PF10750,MF_00508,TIGR00166	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160471_33	658655.HMPREF0988_00895	69.7	0.00000000000219	N/A	N/A
eggNOG-mapper	UHGV-0160471_37	1394176.AWUO01000014_gene642	49.7	0.00000397	N/A	N/A
KOfam	UHGV-0160471_38	K07727	54.5	0.0000000000000036	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0160471_38	UniRef90_F7K072	125.0	2.27e-36	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0160471_38	411470.RUMGNA_00075	125.0	3.8e-37	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0160471_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0160471_38	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_41	phrog_374	185.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160471_41	UniRef90_A0A0R1VMU2	184.0	0	Pathogenesis-related transcriptional factor and ERF protein	N/A
eggNOG-mapper	UHGV-0160471_41	1291743.LOSG293_110580	158.0	0	N/A	N/A
structural_annotation	UHGV-0160471_41	PF17375	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160471_43	PF20593	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_47	phrog_1233	48.3	0.00000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0160471_47	658655.HMPREF0988_00914	94.0	1.48e-23	N/A	N/A
eggNOG-mapper	UHGV-0160471_48	658655.HMPREF0988_00915	106.0	1.89e-25	N/A	N/A
PHROG	UHGV-0160471_49	phrog_20016	219.6	0	N/A	unknown function
UniRef90	UHGV-0160471_49	UniRef90_A0A285PT46	161.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0160471_49	397290.C810_05214	223.0	0	N/A	N/A
structural_annotation	UHGV-0160471_49	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_50	phrog_16490	193.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0160471_50	397290.C810_01328	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-0160471_51	658655.HMPREF0988_00918	89.0	1.85e-22	N/A	N/A
eggNOG-mapper	UHGV-0160471_52	658655.HMPREF0988_00919	91.7	3.65e-21	N/A	N/A
KOfam	UHGV-0160471_54	K14059	111.5	1.3e-32	int; integrase	N/A
PHROG	UHGV-0160471_54	phrog_1	114.5	1.3e-33	integrase	integration and excision
UniRef90	UHGV-0160471_54	UniRef90_A0A173REA3	788.0	0	Site-specific tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0160471_54	97139.C824_00125	324.0	0	Phage integrase family	N/A
Pfam	UHGV-0160471_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0160471_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0160471_54	PF00589,PF02920,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160471_55	UniRef90_A0A173RE24	149.0	1.4013e-45	Bacterial regulatory proteins, luxR family	N/A
Pfam	UHGV-0160471_55	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0160471_55	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0160471_56	K00571	117.2	2e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0160471_56	phrog_23224	149.6	8.40779e-45	DNA methyltransferase	other
UniRef90	UHGV-0160471_56	UniRef90_A0A3R6JG61	415.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0160471_56	981335.G4W934_9CAUD	219.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0160471_56	MTase_II_00172	119.0	5.4e-35	Type II methyltransferase	RM
Pfam	UHGV-0160471_56	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0160471_56	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_58	phrog_6724	82.0	4.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0160471_58	1463936.JOJI01000043_gene7935	63.2	0.0000000000686	N/A	N/A
eggNOG-mapper	UHGV-0160471_59	478749.BRYFOR_07594	50.4	0.00000535	N/A	N/A
PHROG	UHGV-0160471_61	phrog_874	187.0	0	N/A	unknown function
UniRef90	UHGV-0160471_61	UniRef90_UPI0018F57B3A	225.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0160471_61	411468.CLOSCI_00298	174.0	0	N/A	N/A
structural_annotation	UHGV-0160471_61	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_63	phrog_20593	87.9	8.1e-26	N/A	unknown function
PHROG	UHGV-0160471_64	phrog_8684	98.0	6.4e-29	N/A	unknown function
UniRef90	UHGV-0160471_64	UniRef90_A0A416ZXS5	190.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0160471_64	411470.RUMGNA_02199	86.7	1.24e-19	N/A	N/A
Pfam	UHGV-0160471_64	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0160471_64	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0160471_64	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0160471_65	phrog_7711	135.8	1.7e-40	N/A	unknown function
UniRef90	UHGV-0160471_65	UniRef90_UPI001C38CAD2	119.0	5.2e-31	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0160471_65	268407.PWYN_15580	115.0	3.1e-31	N/A	N/A
eggNOG-mapper	UHGV-0160471_66	476272.RUMHYD_03348	50.8	0.00000707	N/A	N/A
PHROG	UHGV-0160471_67	phrog_22292	66.4	3.8e-19	N/A	unknown function