UHGV-0160741 (vOTU-093895)

Viral Genome: UHGV-0160741

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0160741
vOTU ID	vOTU-093895
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_455855
Associated BioSample	SAMN05971550
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.6 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.59
Jumbo phage	No

Genome content
Genome length (bp)	22,928
GC content	42.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	93%
Average CDS length (bps)	482.86
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0160741_1	phrog_3240	80.6	2.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0160741_1	1158607.UAU_01711	83.6	2.14e-20	N/A	N/A
KOfam	UHGV-0160741_6	K04763	187.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0160741_6	phrog_1	151.8	5.60519e-45	integrase	integration and excision
UniRef90	UHGV-0160741_6	UniRef90_B0NA30	361.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0160741_6	411468.CLOSCI_00297	361.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0160741_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0160741_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0160741_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0160741_6	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0160741_8	K03111	139.8	3.09995e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0160741_8	phrog_44	140.7	9.19952e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0160741_8	UniRef90_A0A2Z4UEP8	252.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0160741_8	537007.BLAHAN_04317	228.0	0	N/A	N/A
Pfam	UHGV-0160741_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0160741_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0160741_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0160741_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0160741_8	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160741_9	1235792.C808_00065	241.0	0	N/A	N/A
PHROG	UHGV-0160741_10	phrog_8470	254.5	0	N/A	unknown function
UniRef90	UHGV-0160741_10	UniRef90_UPI000CDA663D	887.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0160741_10	999413.HMPREF1094_04705	552.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0160741_10	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0160741_10	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_11	phrog_15077	98.0	4.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0160741_11	97139.C824_05986	341.0	0	N/A	N/A
structural_annotation	UHGV-0160741_11	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_12	phrog_37410	84.5	6.8e-25	N/A	unknown function
UniRef90	UHGV-0160741_14	UniRef90_UPI001C0AC902	170.0	0	long-chain fatty acid--CoA ligase	N/A
eggNOG-mapper	UHGV-0160741_14	411470.RUMGNA_02041	115.0	4.1e-32	N/A	N/A
PHROG	UHGV-0160741_15	phrog_599	43.8	0.0000000000056	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0160741_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0160741_15	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0160741_15	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0160741_15	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0160741_17	UniRef90_UPI001F178C7B	91.7	1.58e-19	N/A	N/A
eggNOG-mapper	UHGV-0160741_17	1235793.C809_02210	110.0	2.57e-28	N/A	N/A
structural_annotation	UHGV-0160741_18	PF04319,COG4014	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0160741_22	478749.BRYFOR_07594	53.5	0.000000259	N/A	N/A
eggNOG-mapper	UHGV-0160741_26	476272.RUMHYD_01751	93.6	3.33e-23	N/A	N/A
PHROG	UHGV-0160741_27	phrog_33130	115.3	1.7e-34	N/A	unknown function
UniRef90	UHGV-0160741_27	UniRef90_A0A3B9CD52	79.0	1.72e-17	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0160741_27	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0160741_28	K06909	426.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0160741_28	phrog_3717	167.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0160741_28	UniRef90_UPI00156D9D24	977.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0160741_28	33035.JPJF01000106_gene3136	748.0	0	Terminase small subunit	N/A
Pfam	UHGV-0160741_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0160741_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0160741_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0160741_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0160741_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0160741_28	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_30	phrog_533	253.3	0	portal protein	head and packaging
UniRef90	UHGV-0160741_30	UniRef90_A0A173R9C0	784.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0160741_30	476272.RUMHYD_01758	843.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0160741_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_31	phrog_1129	92.9	1.7e-27	holin	lysis
UniRef90	UHGV-0160741_31	UniRef90_UPI00051B7422	164.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0160741_31	1232453.BAIF02000013_gene3227	154.0	0	N/A	N/A
Pfam	UHGV-0160741_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0160741_31	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_32	phrog_419	117.9	9.4e-35	N/A	unknown function
UniRef90	UHGV-0160741_32	UniRef90_A0A0Y3MTG9	114.0	1.33e-31	Prophage Lp2 protein 33	N/A
eggNOG-mapper	UHGV-0160741_32	1444310.JANV01000162_gene1177	119.0	3.2e-34	N/A	N/A
structural_annotation	UHGV-0160741_32	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_33	phrog_581	247.7	0	minor head protein	head and packaging
UniRef90	UHGV-0160741_33	UniRef90_A0A373MXM0	514.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0160741_33	476272.RUMHYD_01761	568.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0160741_33	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0160741_33	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0160741_33	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_34	phrog_194	77.3	2.8e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0160741_34	UniRef90_UPI001D14C9C8	211.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0160741_34	476272.RUMHYD_01775	171.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0160741_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0160741_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_35	phrog_247	278.2	0	major head protein	head and packaging
UniRef90	UHGV-0160741_35	UniRef90_UPI00156F9026	715.0	0	phage coat protein	N/A
eggNOG-mapper	UHGV-0160741_35	536233.CLO_0886	403.0	0	N/A	N/A
COG	UHGV-0160741_35	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0160741_35	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_36	phrog_541	81.7	7.3e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0160741_36	476272.RUMHYD_01778	218.0	0	N/A	N/A
PHROG	UHGV-0160741_37	phrog_1233	83.8	2.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0160741_37	33035.JPJF01000106_gene3130	107.0	1.16e-28	N/A	N/A
PHROG	UHGV-0160741_39	phrog_3366	96.4	2.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0160741_39	476272.RUMHYD_01779	206.0	0	N/A	N/A
structural_annotation	UHGV-0160741_39	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_40	phrog_556	76.4	3e-22	minor head protein	head and packaging
UniRef90	UHGV-0160741_40	UniRef90_UPI0008B4CFF0	158.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0160741_40	476272.RUMHYD_01780	223.0	0	N/A	N/A
Pfam	UHGV-0160741_40	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0160741_40	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_41	phrog_3266	89.6	2.8e-26	tail completion	connector
eggNOG-mapper	UHGV-0160741_41	476272.RUMHYD_01781	256.0	0	N/A	N/A
structural_annotation	UHGV-0160741_41	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_42	phrog_3099	111.0	1.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0160741_42	476272.RUMHYD_01782	252.0	0	N/A	N/A
structural_annotation	UHGV-0160741_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_43	phrog_11299	120.2	1.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0160741_43	33035.JPJF01000106_gene3125	110.0	2.74e-29	N/A	N/A
structural_annotation	UHGV-0160741_43	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0160741_44	phrog_706	127.1	8.6e-38	N/A	unknown function
UniRef90	UHGV-0160741_44	UniRef90_UPI00156F9D1C	271.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0160741_44	33035.JPJF01000106_gene3124	190.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0160741_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0160741_44	PF06854	N/A	N/A	N/A	N/A