UHGV-0161000 (vOTU-140110)

Viral Genome: UHGV-0161000

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0161000
vOTU ID	vOTU-140110
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_475642
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.75 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.36
Jumbo phage	No

Genome content
Genome length (bp)	29,071
GC content	45.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	93%
Average CDS length (bps)	554.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0161000_3	phrog_659	199.7	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161000_3	UniRef90_UPI0009E55993	408.0	0	N/A	N/A
eggNOG-mapper	UHGV-0161000_3	1507.HMPREF0262_00431	212.0	0	N/A	N/A
Pfam	UHGV-0161000_3	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0161000_3	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_4	phrog_72	56.9	2.8e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0161000_4	1304866.K413DRAFT_1197	90.5	1.85e-20	N/A	N/A
PHROG	UHGV-0161000_5	phrog_7566	85.0	5.8e-25	N/A	unknown function
UniRef90	UHGV-0161000_5	UniRef90_A0A8D9UHC0	86.3	5.78e-20	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0161000_5	693746.OBV_25470	101.0	2.09e-26	N/A	N/A
KOfam	UHGV-0161000_6	K03111	134.7	1.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0161000_6	phrog_44	142.7	2.40042e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161000_6	UniRef90_A0A3A6ECW8	257.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0161000_6	665956.HMPREF1032_00430	206.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0161000_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0161000_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0161000_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0161000_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0161000_6	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_7	phrog_2514	85.4	7.3e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0161000_7	665956.HMPREF1032_02617	221.0	0	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-0161000_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0161000_7	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0161000_8	K02314	265.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0161000_8	phrog_19	261.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161000_8	UniRef90_A0A0W7TNB4	818.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0161000_8	665956.HMPREF1032_02618	684.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0161000_8	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0161000_8	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0161000_8	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0161000_8	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_10	phrog_244	81.2	1.7e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0161000_10	33035.JPJF01000122_gene2460	173.0	0	N/A	N/A
structural_annotation	UHGV-0161000_10	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0161000_12	K00571	107.2	2.1e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0161000_12	phrog_67	98.8	3.1e-30	DNA methyltransferase	other
UniRef90	UHGV-0161000_12	UniRef90_A0A3A6E967	524.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0161000_12	910314.HMPREF9220_0636	374.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0161000_12	MTase_II_00157	82.3	2.9e-25	Type II methyltransferase	RM
Pfam	UHGV-0161000_12	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0161000_12	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0161000_12	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_15	phrog_599	46.9	0.00000000000041	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0161000_15	UniRef90_U2DJA0	50.1	0.0000064	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0161000_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0161000_15	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_17	phrog_757	215.4	0	DNA methyltransferase	other
UniRef90	UHGV-0161000_17	UniRef90_A0A371AZL8	234.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0161000_17	1235790.C805_00032	300.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0161000_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0161000_17	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_18	phrog_38832	81.3	6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0161000_18	665956.HMPREF1032_03087	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0161000_21	665956.HMPREF1032_03084	58.5	0.000000000665	N/A	N/A
PHROG	UHGV-0161000_23	phrog_7704	53.7	0.0000000000000044	N/A	unknown function
UniRef90	UHGV-0161000_23	UniRef90_UPI00189DCC57	55.5	0.0000000143	N/A	N/A
eggNOG-mapper	UHGV-0161000_23	1316932.MHH_c17560	50.1	0.00000238	N/A	N/A
Pfam	UHGV-0161000_23	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0161000_23	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_24	phrog_2245	90.1	2.7e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0161000_24	UniRef90_A0A4U9RLZ8	75.9	5.24e-16	N/A	N/A
eggNOG-mapper	UHGV-0161000_24	1519439.JPJG01000059_gene1914	68.6	0.00000000000014	N/A	N/A
PHROG	UHGV-0161000_26	phrog_36	59.7	6.8e-17	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0161000_26	PF07374,TIGR01637	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161000_27	UniRef90_UPI0009523D83	187.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0161000_27	1232443.BAIA02000078_gene38	164.0	0	N/A	N/A
Pfam	UHGV-0161000_27	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-0161000_27	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0161000_28	K06909	125.2	7e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0161000_28	phrog_10250	173.1	0	N/A	unknown function
UniRef90	UHGV-0161000_28	UniRef90_A0A3D3Y0N9	650.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0161000_28	1226322.HMPREF1545_00043	607.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0161000_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0161000_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0161000_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0161000_28	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_29	phrog_64	180.5	0	portal protein	head and packaging
UniRef90	UHGV-0161000_29	UniRef90_UPI001AA0B7FF	506.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0161000_29	673376.F2VHW1_9CAUD	236.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0161000_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
PHROG	UHGV-0161000_30	phrog_595	124.9	9e-37	head maturation protease	head and packaging
UniRef90	UHGV-0161000_30	UniRef90_A0A3D3Y165	517.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0161000_30	1504822.CCNO01000013_gene286	195.0	0	cell adhesion	N/A
Pfam	UHGV-0161000_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0161000_30	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0161000_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161000_30	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_31	phrog_5	75.2	1.2e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-0161000_31	UniRef90_UPI0018AA0B5A	197.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0161000_31	1280685.AUKC01000004_gene1630	129.0	9.36e-37	N/A	N/A
Pfam	UHGV-0161000_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0161000_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0161000_31	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_35	phrog_194	40.7	0.000000000045	head scaffolding protein	head and packaging
UniRef90	UHGV-0161000_35	UniRef90_A0A6B9SU02	102.0	1.13e-23	Fibronectin autolysin	N/A
structural_annotation	UHGV-0161000_35	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_36	phrog_212	264.8	0	major head protein	head and packaging
UniRef90	UHGV-0161000_36	UniRef90_A0A8J6JGV9	580.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0161000_36	935836.JAEL01000021_gene1494	369.0	0	N/A	N/A
structural_annotation	UHGV-0161000_36	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_37	phrog_1236	42.6	0.0000000000028	head protein	head and packaging
PHROG	UHGV-0161000_38	phrog_17977	71.7	8e-21	N/A	unknown function
UniRef90	UHGV-0161000_38	UniRef90_UPI00141211AB	101.0	1.44e-25	head-tail adaptor protein	N/A
structural_annotation	UHGV-0161000_38	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_39	phrog_17405	57.2	2.9e-16	head protein	head and packaging
UniRef90	UHGV-0161000_39	UniRef90_A0A415JI88	105.0	4.72e-27	N/A	N/A
structural_annotation	UHGV-0161000_39	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_40	phrog_885	101.8	6.3e-30	major tail protein	tail
UniRef90	UHGV-0161000_40	UniRef90_A0A843J9F0	178.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0161000_40	1111121.HMPREF1247_0789	196.0	0	N/A	N/A
structural_annotation	UHGV-0161000_40	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_43	phrog_6900	275.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0161000_43	UniRef90_A0A3D0EFB4	277.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0161000_43	1499683.CCFF01000017_gene2565	328.0	0	tape measure	N/A
COG	UHGV-0161000_43	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161000_43	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_44	phrog_33	75.3	1.5e-21	distal tail protein Dit	tail
UniRef90	UHGV-0161000_44	UniRef90_A0A1C6H6D2	200.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0161000_44	1123263.AUKY01000068_gene490	139.0	8.78e-38	tail component	N/A
COG	UHGV-0161000_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0161000_44	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_45	phrog_1067	409.3	0	minor head protein	head and packaging
UniRef90	UHGV-0161000_45	UniRef90_A0A0D8IVK1	837.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0161000_45	1160721.RBI_I01574	432.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0161000_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0161000_45	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0161000_45	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0161000_45	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_46	phrog_13564	62.8	5.6e-18	minor tail protein	tail
UniRef90	UHGV-0161000_46	UniRef90_UPI001967E4F4	749.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0161000_46	665956.HMPREF1032_03918	56.6	0.00000972	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
Pfam	UHGV-0161000_46	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
KOfam	UHGV-0161000_47	K01447	125.4	6.8e-37	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0161000_47	phrog_3088	181.8	0	amidase	lysis
UniRef90	UHGV-0161000_47	UniRef90_UPI0019676D30	444.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0161000_47	883081.HMPREF9698_01099	164.0	0	Ami_2	N/A
Pfam	UHGV-0161000_47	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0161000_47	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0161000_47	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0161000_47	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0161000_48	phrog_937	50.5	0.000000000000041	hemolysin	other
PHROG	UHGV-0161000_49	phrog_1129	77.9	7.9e-23	holin	lysis
UniRef90	UHGV-0161000_49	UniRef90_UPI00051B7422	122.0	2.47e-34	phage holin family protein	N/A
eggNOG-mapper	UHGV-0161000_49	411460.RUMTOR_01325	119.0	4.83e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0161000_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0161000_49	PF16079	N/A	N/A	N/A	N/A